Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS15725

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
3,327,726	+				+0.8
3,327,727	-				-3.4
3,327,727	-				-3.4
3,327,727	-				-1.7
3,327,789	+				-1.4
3,327,789	+				-1.8
3,327,789	+				-1.4
3,327,789	+				-1.6
3,327,789	+				-1.2
3,327,789	+				-3.4
3,327,789	+				-0.6
3,327,789	+				-2.6
3,327,790	-				-2.2
3,327,816	+				-1.4
3,327,817	-				-1.3
3,327,831	+				-1.4
3,327,831	+				-1.9
3,327,831	+				-2.8
3,327,832	-				-1.1
3,327,832	-				-2.5
3,327,849	-				-1.7
3,327,868	-				-0.2
3,327,868	-				-4.6
3,327,874	+				-1.5
3,327,875	-				-2.7
3,327,932	+		ABCV34_RS15715	0.20	-1.3
3,327,932	+		ABCV34_RS15715	0.20	+3.1
3,327,933	-		ABCV34_RS15715	0.21	-1.3
3,327,933	-		ABCV34_RS15715	0.21	-0.5
3,327,933	-		ABCV34_RS15715	0.21	-0.8
3,327,933	-		ABCV34_RS15715	0.21	-4.4
3,327,933	-		ABCV34_RS15715	0.21	+0.3
3,327,933	-		ABCV34_RS15715	0.21	-1.1
3,327,933	-		ABCV34_RS15715	0.21	-2.0
3,327,968	+		ABCV34_RS15715	0.27	-1.4
3,327,968	+		ABCV34_RS15715	0.27	-3.5
3,327,969	-		ABCV34_RS15715	0.27	-3.6
3,328,031	+		ABCV34_RS15715	0.39	-1.9
3,328,031	+		ABCV34_RS15715	0.39	-0.3
3,328,032	-		ABCV34_RS15715	0.39	+1.3
3,328,032	-		ABCV34_RS15715	0.39	-0.9
3,328,032	-		ABCV34_RS15715	0.39	-4.6
3,328,144	+		ABCV34_RS15715	0.60	-3.1
3,328,144	+		ABCV34_RS15715	0.60	-0.4
3,328,144	+		ABCV34_RS15715	0.60	-2.7
3,328,145	-		ABCV34_RS15715	0.60	-2.3
3,328,145	-		ABCV34_RS15715	0.60	+0.1
3,328,175	+		ABCV34_RS15715	0.65	-2.4
3,328,175	+		ABCV34_RS15715	0.65	-1.5
3,328,175	+		ABCV34_RS15715	0.65	-4.0
3,328,176	-		ABCV34_RS15715	0.66	-1.0
3,328,192	+		ABCV34_RS15715	0.69	-4.1
3,328,193	-		ABCV34_RS15715	0.69	-2.2
3,328,193	-		ABCV34_RS15715	0.69	-3.3
3,328,193	-		ABCV34_RS15715	0.69	-2.6
3,328,230	+		ABCV34_RS15715	0.76	-0.7
3,328,231	-		ABCV34_RS15715	0.76	-0.4
3,328,231	-		ABCV34_RS15715	0.76	-1.7
3,328,231	-		ABCV34_RS15715	0.76	+0.7
3,328,231	-		ABCV34_RS15715	0.76	-1.5
3,328,231	-		ABCV34_RS15715	0.76	-3.2
3,328,234	-		ABCV34_RS15715	0.76	-2.0
3,328,383	+				-1.4
3,328,383	+				+0.5
3,328,383	+				-1.3
3,328,384	-				-3.2
3,328,398	-				-1.4
3,328,398	-				-3.3
3,328,398	-				-3.4
3,328,429	+		ABCV34_RS15720	0.18	-3.7
3,328,429	+		ABCV34_RS15720	0.18	-1.4
3,328,429	+		ABCV34_RS15720	0.18	-0.1
3,328,429	+		ABCV34_RS15720	0.18	-2.2
3,328,429	+		ABCV34_RS15720	0.18	+0.5
3,328,429	+		ABCV34_RS15720	0.18	+0.3
3,328,430	-		ABCV34_RS15720	0.19	+0.2
3,328,430	-		ABCV34_RS15720	0.19	-1.1
3,328,430	-		ABCV34_RS15720	0.19	+0.0
3,328,430	-		ABCV34_RS15720	0.19	-3.1
3,328,430	-		ABCV34_RS15720	0.19	-1.3
3,328,430	-		ABCV34_RS15720	0.19	+2.5
3,328,439	+		ABCV34_RS15720	0.21	-2.0
3,328,439	+		ABCV34_RS15720	0.21	-2.7
3,328,439	+		ABCV34_RS15720	0.21	-1.2
3,328,439	+		ABCV34_RS15720	0.21	+1.4
3,328,440	-		ABCV34_RS15720	0.22	-1.3
3,328,440	-		ABCV34_RS15720	0.22	-0.5
3,328,440	-		ABCV34_RS15720	0.22	-2.3
3,328,441	+		ABCV34_RS15720	0.22	-3.5
3,328,441	+		ABCV34_RS15720	0.22	-2.7
3,328,441	+		ABCV34_RS15720	0.22	-1.1
3,328,442	-		ABCV34_RS15720	0.22	-3.9
3,328,442	-		ABCV34_RS15720	0.22	-4.5
3,328,442	-		ABCV34_RS15720	0.22	-2.0
3,328,442	-		ABCV34_RS15720	0.22	-4.6
3,328,589	+		ABCV34_RS15720	0.66	-1.8
3,328,590	-		ABCV34_RS15720	0.66	-2.5
3,328,606	+		ABCV34_RS15720	0.71	+1.3
3,328,606	+		ABCV34_RS15720	0.71	-3.6
3,328,606	+		ABCV34_RS15720	0.71	+1.4
3,328,606	+		ABCV34_RS15720	0.71	-2.0
3,328,606	+		ABCV34_RS15720	0.71	-2.8
3,328,606	+		ABCV34_RS15720	0.71	-3.1
3,328,606	+		ABCV34_RS15720	0.71	-4.2
3,328,606	+		ABCV34_RS15720	0.71	+0.7
3,328,606	+		ABCV34_RS15720	0.71	-0.5
3,328,607	-		ABCV34_RS15720	0.71	+1.4
3,328,607	-		ABCV34_RS15720	0.71	-1.7
3,328,607	-		ABCV34_RS15720	0.71	+1.7
3,328,607	-		ABCV34_RS15720	0.71	-0.6
3,328,607	-		ABCV34_RS15720	0.71	+1.3
3,328,607	-		ABCV34_RS15720	0.71	-1.2
3,328,607	-		ABCV34_RS15720	0.71	-4.5
3,328,607	-		ABCV34_RS15720	0.71	-0.9
3,328,607	-		ABCV34_RS15720	0.71	-3.3
3,328,607	-		ABCV34_RS15720	0.71	-0.7
3,328,607	-		ABCV34_RS15720	0.71	-2.8
3,328,607	-		ABCV34_RS15720	0.71	-3.3
3,328,607	-		ABCV34_RS15720	0.71	-2.3
3,328,607	-		ABCV34_RS15720	0.71	-3.7
3,328,629	+		ABCV34_RS15720	0.78	-2.3
3,328,629	+		ABCV34_RS15720	0.78	-1.8
3,328,629	+		ABCV34_RS15720	0.78	-1.4
3,328,630	-		ABCV34_RS15720	0.78	+0.2
3,328,630	-		ABCV34_RS15720	0.78	-0.1
3,328,630	-		ABCV34_RS15720	0.78	-0.4
3,328,630	-		ABCV34_RS15720	0.78	-2.3
3,328,630	-		ABCV34_RS15720	0.78	-3.0
3,328,854	+		ABCV34_RS15725	0.55	-3.0
3,328,855	-		ABCV34_RS15725	0.55	-1.7
3,328,855	-		ABCV34_RS15725	0.55	-0.6
3,328,927	+		ABCV34_RS15725	0.80	+2.8
3,328,928	-		ABCV34_RS15725	0.80	-2.5
3,328,972	+				-1.3
3,328,973	-				-0.0
3,328,973	-				-2.0
3,328,996	+				-1.2
3,328,996	+				-2.8
3,328,996	+				+0.7
3,328,996	+				-2.7
3,328,997	-				-4.6
3,328,997	-				-0.6
3,328,997	-				+1.3
3,328,997	-				-1.7
3,328,997	-				+0.4
3,328,997	-				-3.5
3,329,087	+				-2.0
3,329,087	+				-0.7
3,329,128	-				-2.5
3,329,195	-				-2.2
3,329,195	-				+0.0
3,329,319	+		ABCV34_RS15730	0.24	-2.5
3,329,319	+		ABCV34_RS15730	0.24	+1.8
3,329,471	+		ABCV34_RS15730	0.49	-2.1
3,329,471	+		ABCV34_RS15730	0.49	+0.1
3,329,472	-		ABCV34_RS15730	0.50	-2.2
3,329,472	-		ABCV34_RS15730	0.50	-1.1
3,329,518	+		ABCV34_RS15730	0.57	-1.7
3,329,518	+		ABCV34_RS15730	0.57	+0.6
3,329,518	+		ABCV34_RS15730	0.57	-0.1
3,329,518	+		ABCV34_RS15730	0.57	-3.0
3,329,518	+		ABCV34_RS15730	0.57	-2.1
3,329,518	+		ABCV34_RS15730	0.57	-1.9
3,329,519	-		ABCV34_RS15730	0.57	-1.4
3,329,519	-		ABCV34_RS15730	0.57	-0.9
3,329,519	-		ABCV34_RS15730	0.57	-1.7
3,329,545	+		ABCV34_RS15730	0.62	-1.1
3,329,545	+		ABCV34_RS15730	0.62	+0.5
3,329,546	-		ABCV34_RS15730	0.62	-0.3
3,329,546	-		ABCV34_RS15730	0.62	-2.7
3,329,569	-		ABCV34_RS15730	0.66	-3.1
3,329,569	-		ABCV34_RS15730	0.66	-2.3
3,329,708	+		ABCV34_RS15730	0.88	-4.4
3,329,708	+		ABCV34_RS15730	0.88	+0.9
3,329,709	-		ABCV34_RS15730	0.89	+2.7
3,329,709	-		ABCV34_RS15730	0.89	-1.5
3,329,709	-		ABCV34_RS15730	0.89	-1.1
3,329,709	-		ABCV34_RS15730	0.89	+0.9
3,329,719	+				-2.4
3,329,719	+				-1.5
3,329,720	-				-2.6
3,329,745	+				-2.3
3,329,745	+				-1.1
3,329,746	-				+0.8
3,329,746	-				-2.7
3,329,746	-				+0.5
3,329,746	-				-1.0
3,329,776	+				-2.3
3,329,776	+				-1.7
3,329,776	+				-0.3
3,329,777	-				-2.5
3,329,777	-				+2.3
3,329,777	-				-0.8
3,329,815	+				-4.7
3,329,878	+				-0.2
3,329,878	+				-3.2
3,329,878	+				-2.4
3,329,878	+				-2.8
3,329,878	+				-2.8
3,329,878	+				-0.7
3,329,879	-				-1.3
3,329,879	-				+0.3
3,329,880	+				-2.0
3,329,880	+				-3.4
3,329,880	+				-1.8
3,329,880	+				-1.6
3,329,880	+				-1.3
3,329,880	+				+0.9
3,329,880	+				-2.9
3,329,880	+				+0.3
3,329,880	+				-0.9
3,329,880	+				-1.5
3,329,881	-				+0.2
3,329,881	-				-0.1
3,329,881	-				-1.4
3,329,881	-				-4.1
3,329,881	-				-2.0
3,329,881	-				-2.3
3,329,884	+				-1.3
3,329,884	+				-0.8
3,329,884	+				+0.1
3,329,884	+				-1.5
3,329,884	+				-1.3
3,329,884	+				-0.9
3,329,884	+				-0.9
3,329,884	+				+0.1
3,329,885	-				+1.9
3,329,885	-				-1.4
3,329,885	-				-2.9
3,329,885	-				-0.1
3,329,885	-				-1.5
3,329,885	-				+1.0