Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09095

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS09090 and ABCV34_RS09095 are separated by 71 nucleotidesABCV34_RS09095 and ABCV34_RS09100 are separated by 28 nucleotidesABCV34_RS09100 and ABCV34_RS09105 overlap by 4 nucleotides ABCV34_RS09090: ABCV34_RS09090 - thiamine pyrophosphate-binding protein, at 1,941,662 to 1,943,323 _RS09090 ABCV34_RS09095: ABCV34_RS09095 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 1,943,395 to 1,944,318 _RS09095 ABCV34_RS09100: ABCV34_RS09100 - XRE family transcriptional regulator, at 1,944,347 to 1,944,982 _RS09100 ABCV34_RS09105: ABCV34_RS09105 - ABC transporter ATP-binding protein, at 1,944,979 to 1,945,713 _RS09105 Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1942.470 kb on + strand, within ABCV34_RS09090at 1942.470 kb on + strand, within ABCV34_RS09090at 1942.470 kb on + strand, within ABCV34_RS09090at 1942.470 kb on + strand, within ABCV34_RS09090at 1942.902 kb on + strand, within ABCV34_RS09090at 1942.902 kb on + strand, within ABCV34_RS09090at 1942.902 kb on + strand, within ABCV34_RS09090at 1942.902 kb on + strand, within ABCV34_RS09090at 1942.902 kb on + strand, within ABCV34_RS09090at 1942.903 kb on - strand, within ABCV34_RS09090at 1942.903 kb on - strand, within ABCV34_RS09090at 1942.903 kb on - strand, within ABCV34_RS09090at 1942.903 kb on - strand, within ABCV34_RS09090at 1942.972 kb on - strand, within ABCV34_RS09090at 1942.972 kb on - strand, within ABCV34_RS09090at 1943.061 kb on - strand, within ABCV34_RS09090at 1943.061 kb on - strand, within ABCV34_RS09090at 1943.139 kb on - strand, within ABCV34_RS09090at 1943.142 kb on + strand, within ABCV34_RS09090at 1943.142 kb on + strand, within ABCV34_RS09090at 1943.143 kb on - strand, within ABCV34_RS09090at 1943.232 kb on + strandat 1943.232 kb on + strandat 1943.232 kb on + strandat 1943.232 kb on + strandat 1943.233 kb on - strandat 1943.233 kb on - strandat 1943.392 kb on + strandat 1943.392 kb on + strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.393 kb on - strandat 1943.567 kb on + strand, within ABCV34_RS09095at 1943.567 kb on + strand, within ABCV34_RS09095at 1943.567 kb on + strand, within ABCV34_RS09095at 1943.568 kb on - strand, within ABCV34_RS09095at 1943.568 kb on - strand, within ABCV34_RS09095at 1943.568 kb on - strand, within ABCV34_RS09095at 1943.568 kb on - strand, within ABCV34_RS09095at 1943.568 kb on - strand, within ABCV34_RS09095at 1943.650 kb on + strand, within ABCV34_RS09095at 1943.651 kb on - strand, within ABCV34_RS09095at 1943.651 kb on - strand, within ABCV34_RS09095at 1943.651 kb on - strand, within ABCV34_RS09095at 1943.711 kb on + strand, within ABCV34_RS09095at 1943.711 kb on + strand, within ABCV34_RS09095at 1943.711 kb on + strand, within ABCV34_RS09095at 1943.711 kb on + strand, within ABCV34_RS09095at 1943.712 kb on - strand, within ABCV34_RS09095at 1943.712 kb on - strand, within ABCV34_RS09095at 1943.712 kb on - strand, within ABCV34_RS09095at 1943.712 kb on - strand, within ABCV34_RS09095at 1944.044 kb on + strand, within ABCV34_RS09095at 1944.044 kb on + strand, within ABCV34_RS09095at 1944.044 kb on + strand, within ABCV34_RS09095at 1944.044 kb on + strand, within ABCV34_RS09095at 1944.045 kb on - strand, within ABCV34_RS09095at 1944.268 kb on + strandat 1944.268 kb on + strandat 1944.268 kb on + strandat 1944.269 kb on - strandat 1944.269 kb on - strandat 1944.269 kb on - strandat 1944.269 kb on - strandat 1944.269 kb on - strandat 1944.269 kb on - strandat 1944.390 kb on - strandat 1944.390 kb on - strandat 1944.454 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.456 kb on + strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.457 kb on - strand, within ABCV34_RS09100at 1944.492 kb on + strand, within ABCV34_RS09100at 1944.492 kb on + strand, within ABCV34_RS09100at 1944.492 kb on + strand, within ABCV34_RS09100at 1944.492 kb on + strand, within ABCV34_RS09100at 1944.492 kb on + strand, within ABCV34_RS09100at 1944.493 kb on - strand, within ABCV34_RS09100at 1944.493 kb on - strand, within ABCV34_RS09100at 1944.493 kb on - strand, within ABCV34_RS09100at 1944.493 kb on - strand, within ABCV34_RS09100at 1944.493 kb on - strand, within ABCV34_RS09100at 1944.495 kb on + strand, within ABCV34_RS09100at 1944.495 kb on + strand, within ABCV34_RS09100at 1944.495 kb on + strand, within ABCV34_RS09100at 1944.496 kb on - strand, within ABCV34_RS09100at 1944.496 kb on - strand, within ABCV34_RS09100at 1944.531 kb on + strand, within ABCV34_RS09100at 1944.531 kb on + strand, within ABCV34_RS09100at 1944.531 kb on + strand, within ABCV34_RS09100at 1944.532 kb on - strand, within ABCV34_RS09100at 1944.532 kb on - strand, within ABCV34_RS09100at 1944.595 kb on + strand, within ABCV34_RS09100at 1944.595 kb on + strand, within ABCV34_RS09100at 1944.657 kb on + strand, within ABCV34_RS09100at 1944.657 kb on + strand, within ABCV34_RS09100at 1944.657 kb on + strand, within ABCV34_RS09100at 1944.658 kb on - strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.795 kb on + strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.796 kb on - strand, within ABCV34_RS09100at 1944.949 kb on + strandat 1944.949 kb on + strandat 1944.949 kb on + strandat 1944.949 kb on + strandat 1944.950 kb on - strandat 1944.950 kb on - strandat 1944.950 kb on - strandat 1944.950 kb on - strandat 1945.016 kb on + strandat 1945.016 kb on + strandat 1945.016 kb on + strandat 1945.017 kb on - strandat 1945.017 kb on - strandat 1945.017 kb on - strandat 1945.094 kb on + strand, within ABCV34_RS09105at 1945.094 kb on + strand, within ABCV34_RS09105at 1945.094 kb on + strand, within ABCV34_RS09105at 1945.094 kb on + strand, within ABCV34_RS09105at 1945.094 kb on + strand, within ABCV34_RS09105at 1945.095 kb on - strand, within ABCV34_RS09105at 1945.095 kb on - strand, within ABCV34_RS09105at 1945.095 kb on - strand, within ABCV34_RS09105at 1945.245 kb on + strand, within ABCV34_RS09105at 1945.245 kb on + strand, within ABCV34_RS09105at 1945.245 kb on + strand, within ABCV34_RS09105at 1945.245 kb on + strand, within ABCV34_RS09105at 1945.246 kb on - strand, within ABCV34_RS09105at 1945.246 kb on - strand, within ABCV34_RS09105at 1945.246 kb on - strand, within ABCV34_RS09105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
remove
1,942,470 + ABCV34_RS09090 0.49 +0.3
1,942,470 + ABCV34_RS09090 0.49 -1.5
1,942,470 + ABCV34_RS09090 0.49 -4.8
1,942,470 + ABCV34_RS09090 0.49 -0.4
1,942,902 + ABCV34_RS09090 0.75 -1.0
1,942,902 + ABCV34_RS09090 0.75 -1.5
1,942,902 + ABCV34_RS09090 0.75 -5.3
1,942,902 + ABCV34_RS09090 0.75 -0.1
1,942,902 + ABCV34_RS09090 0.75 -0.7
1,942,903 - ABCV34_RS09090 0.75 -3.3
1,942,903 - ABCV34_RS09090 0.75 -0.1
1,942,903 - ABCV34_RS09090 0.75 -1.2
1,942,903 - ABCV34_RS09090 0.75 -1.7
1,942,972 - ABCV34_RS09090 0.79 -1.4
1,942,972 - ABCV34_RS09090 0.79 -1.0
1,943,061 - ABCV34_RS09090 0.84 -0.9
1,943,061 - ABCV34_RS09090 0.84 -3.0
1,943,139 - ABCV34_RS09090 0.89 -2.4
1,943,142 + ABCV34_RS09090 0.89 +2.4
1,943,142 + ABCV34_RS09090 0.89 -4.4
1,943,143 - ABCV34_RS09090 0.89 -0.7
1,943,232 + -0.3
1,943,232 + -3.1
1,943,232 + +0.6
1,943,232 + -0.4
1,943,233 - -1.6
1,943,233 - -1.0
1,943,392 + +0.1
1,943,392 + +1.8
1,943,393 - -1.7
1,943,393 - -0.7
1,943,393 - -0.1
1,943,393 - +0.5
1,943,393 - +3.0
1,943,393 - -0.7
1,943,393 - -1.5
1,943,393 - -2.5
1,943,393 - +2.9
1,943,393 - -1.9
1,943,567 + ABCV34_RS09095 0.19 -0.6
1,943,567 + ABCV34_RS09095 0.19 +1.4
1,943,567 + ABCV34_RS09095 0.19 -0.7
1,943,568 - ABCV34_RS09095 0.19 +0.2
1,943,568 - ABCV34_RS09095 0.19 -1.4
1,943,568 - ABCV34_RS09095 0.19 +0.1
1,943,568 - ABCV34_RS09095 0.19 -0.5
1,943,568 - ABCV34_RS09095 0.19 +0.9
1,943,650 + ABCV34_RS09095 0.28 -5.1
1,943,651 - ABCV34_RS09095 0.28 -1.5
1,943,651 - ABCV34_RS09095 0.28 -3.8
1,943,651 - ABCV34_RS09095 0.28 +0.3
1,943,711 + ABCV34_RS09095 0.34 -0.4
1,943,711 + ABCV34_RS09095 0.34 -3.8
1,943,711 + ABCV34_RS09095 0.34 -0.6
1,943,711 + ABCV34_RS09095 0.34 +0.6
1,943,712 - ABCV34_RS09095 0.34 -2.3
1,943,712 - ABCV34_RS09095 0.34 -2.1
1,943,712 - ABCV34_RS09095 0.34 -0.3
1,943,712 - ABCV34_RS09095 0.34 +0.9
1,944,044 + ABCV34_RS09095 0.70 -2.2
1,944,044 + ABCV34_RS09095 0.70 -1.4
1,944,044 + ABCV34_RS09095 0.70 -2.8
1,944,044 + ABCV34_RS09095 0.70 -1.7
1,944,045 - ABCV34_RS09095 0.70 +0.2
1,944,268 + -3.9
1,944,268 + -1.9
1,944,268 + -3.0
1,944,269 - +1.0
1,944,269 - +1.1
1,944,269 - -2.4
1,944,269 - +1.2
1,944,269 - +1.5
1,944,269 - -1.1
1,944,390 - -2.6
1,944,390 - -1.5
1,944,454 + ABCV34_RS09100 0.17 -0.1
1,944,456 + ABCV34_RS09100 0.17 -1.8
1,944,456 + ABCV34_RS09100 0.17 -2.5
1,944,456 + ABCV34_RS09100 0.17 -1.4
1,944,456 + ABCV34_RS09100 0.17 -2.5
1,944,456 + ABCV34_RS09100 0.17 -0.4
1,944,456 + ABCV34_RS09100 0.17 -4.1
1,944,456 + ABCV34_RS09100 0.17 +1.9
1,944,456 + ABCV34_RS09100 0.17 -2.3
1,944,456 + ABCV34_RS09100 0.17 -1.2
1,944,456 + ABCV34_RS09100 0.17 -3.1
1,944,457 - ABCV34_RS09100 0.17 +0.8
1,944,457 - ABCV34_RS09100 0.17 -1.3
1,944,457 - ABCV34_RS09100 0.17 -0.9
1,944,457 - ABCV34_RS09100 0.17 -0.8
1,944,457 - ABCV34_RS09100 0.17 -5.0
1,944,457 - ABCV34_RS09100 0.17 -0.8
1,944,457 - ABCV34_RS09100 0.17 -1.4
1,944,492 + ABCV34_RS09100 0.23 -1.6
1,944,492 + ABCV34_RS09100 0.23 -1.4
1,944,492 + ABCV34_RS09100 0.23 -0.8
1,944,492 + ABCV34_RS09100 0.23 -0.7
1,944,492 + ABCV34_RS09100 0.23 +0.6
1,944,493 - ABCV34_RS09100 0.23 -1.0
1,944,493 - ABCV34_RS09100 0.23 -2.9
1,944,493 - ABCV34_RS09100 0.23 -2.5
1,944,493 - ABCV34_RS09100 0.23 -1.5
1,944,493 - ABCV34_RS09100 0.23 -1.5
1,944,495 + ABCV34_RS09100 0.23 -2.2
1,944,495 + ABCV34_RS09100 0.23 +1.3
1,944,495 + ABCV34_RS09100 0.23 -4.2
1,944,496 - ABCV34_RS09100 0.23 -0.4
1,944,496 - ABCV34_RS09100 0.23 -2.4
1,944,531 + ABCV34_RS09100 0.29 +1.0
1,944,531 + ABCV34_RS09100 0.29 -5.3
1,944,531 + ABCV34_RS09100 0.29 -2.5
1,944,532 - ABCV34_RS09100 0.29 -2.0
1,944,532 - ABCV34_RS09100 0.29 +1.4
1,944,595 + ABCV34_RS09100 0.39 -0.4
1,944,595 + ABCV34_RS09100 0.39 -1.1
1,944,657 + ABCV34_RS09100 0.49 -0.4
1,944,657 + ABCV34_RS09100 0.49 -1.9
1,944,657 + ABCV34_RS09100 0.49 -3.5
1,944,658 - ABCV34_RS09100 0.49 -0.7
1,944,795 + ABCV34_RS09100 0.70 -4.6
1,944,795 + ABCV34_RS09100 0.70 -3.7
1,944,795 + ABCV34_RS09100 0.70 -2.6
1,944,795 + ABCV34_RS09100 0.70 -1.8
1,944,795 + ABCV34_RS09100 0.70 -2.0
1,944,795 + ABCV34_RS09100 0.70 -0.6
1,944,795 + ABCV34_RS09100 0.70 +2.1
1,944,795 + ABCV34_RS09100 0.70 -3.3
1,944,795 + ABCV34_RS09100 0.70 +0.3
1,944,795 + ABCV34_RS09100 0.70 -1.7
1,944,795 + ABCV34_RS09100 0.70 -0.9
1,944,795 + ABCV34_RS09100 0.70 -0.1
1,944,795 + ABCV34_RS09100 0.70 +0.5
1,944,795 + ABCV34_RS09100 0.70 -0.1
1,944,795 + ABCV34_RS09100 0.70 -1.8
1,944,795 + ABCV34_RS09100 0.70 -0.4
1,944,795 + ABCV34_RS09100 0.70 -1.8
1,944,795 + ABCV34_RS09100 0.70 +0.7
1,944,795 + ABCV34_RS09100 0.70 -1.2
1,944,795 + ABCV34_RS09100 0.70 -1.7
1,944,795 + ABCV34_RS09100 0.70 -3.4
1,944,795 + ABCV34_RS09100 0.70 -2.1
1,944,795 + ABCV34_RS09100 0.70 -0.6
1,944,796 - ABCV34_RS09100 0.71 -3.7
1,944,796 - ABCV34_RS09100 0.71 -1.7
1,944,796 - ABCV34_RS09100 0.71 -2.4
1,944,796 - ABCV34_RS09100 0.71 -3.4
1,944,796 - ABCV34_RS09100 0.71 +0.2
1,944,796 - ABCV34_RS09100 0.71 -0.6
1,944,796 - ABCV34_RS09100 0.71 -3.0
1,944,796 - ABCV34_RS09100 0.71 -2.2
1,944,796 - ABCV34_RS09100 0.71 -1.7
1,944,796 - ABCV34_RS09100 0.71 +0.3
1,944,796 - ABCV34_RS09100 0.71 -0.6
1,944,796 - ABCV34_RS09100 0.71 -0.7
1,944,796 - ABCV34_RS09100 0.71 -3.7
1,944,796 - ABCV34_RS09100 0.71 -1.1
1,944,796 - ABCV34_RS09100 0.71 -0.8
1,944,796 - ABCV34_RS09100 0.71 -1.7
1,944,796 - ABCV34_RS09100 0.71 -1.0
1,944,796 - ABCV34_RS09100 0.71 -2.2
1,944,949 + -4.0
1,944,949 + +0.9
1,944,949 + -0.8
1,944,949 + -1.1
1,944,950 - -0.9
1,944,950 - -2.2
1,944,950 - -3.8
1,944,950 - -2.5
1,945,016 + -3.1
1,945,016 + -0.8
1,945,016 + -1.7
1,945,017 - -2.3
1,945,017 - -1.6
1,945,017 - +0.3
1,945,094 + ABCV34_RS09105 0.16 -2.9
1,945,094 + ABCV34_RS09105 0.16 -1.8
1,945,094 + ABCV34_RS09105 0.16 -1.8
1,945,094 + ABCV34_RS09105 0.16 -1.6
1,945,094 + ABCV34_RS09105 0.16 -2.5
1,945,095 - ABCV34_RS09105 0.16 -0.9
1,945,095 - ABCV34_RS09105 0.16 -2.5
1,945,095 - ABCV34_RS09105 0.16 -3.5
1,945,245 + ABCV34_RS09105 0.36 -0.1
1,945,245 + ABCV34_RS09105 0.36 +1.9
1,945,245 + ABCV34_RS09105 0.36 +1.2
1,945,245 + ABCV34_RS09105 0.36 +0.1
1,945,246 - ABCV34_RS09105 0.36 -1.8
1,945,246 - ABCV34_RS09105 0.36 -2.8
1,945,246 - ABCV34_RS09105 0.36 -0.9

Or see this region's nucleotide sequence