Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08470

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,804,906	+		ABCV34_RS08465	0.12	-4.0
1,804,906	+		ABCV34_RS08465	0.12	-2.4
1,804,906	+		ABCV34_RS08465	0.12	-2.6
1,804,907	-		ABCV34_RS08465	0.12	-2.1
1,804,907	-		ABCV34_RS08465	0.12	-2.2
1,804,914	+		ABCV34_RS08465	0.13	-5.0
1,804,914	+		ABCV34_RS08465	0.13	-1.5
1,804,914	+		ABCV34_RS08465	0.13	+0.6
1,804,914	+		ABCV34_RS08465	0.13	-0.2
1,804,914	+		ABCV34_RS08465	0.13	+1.1
1,804,914	+		ABCV34_RS08465	0.13	-1.9
1,804,915	-		ABCV34_RS08465	0.13	-1.2
1,804,915	-		ABCV34_RS08465	0.13	-3.8
1,804,915	-		ABCV34_RS08465	0.13	-3.4
1,804,915	-		ABCV34_RS08465	0.13	-4.0
1,804,915	-		ABCV34_RS08465	0.13	-3.4
1,804,915	-		ABCV34_RS08465	0.13	-1.1
1,805,074	+		ABCV34_RS08465	0.38	+1.0
1,805,074	+		ABCV34_RS08465	0.38	-3.4
1,805,074	+		ABCV34_RS08465	0.38	+0.3
1,805,074	+		ABCV34_RS08465	0.38	-2.4
1,805,074	+		ABCV34_RS08465	0.38	-1.5
1,805,074	+		ABCV34_RS08465	0.38	-0.1
1,805,074	+		ABCV34_RS08465	0.38	-1.9
1,805,074	+		ABCV34_RS08465	0.38	+1.2
1,805,075	-		ABCV34_RS08465	0.38	-0.8
1,805,075	-		ABCV34_RS08465	0.38	-1.5
1,805,075	-		ABCV34_RS08465	0.38	-1.5
1,805,341	+		ABCV34_RS08465	0.79	-3.2
1,805,341	+		ABCV34_RS08465	0.79	-0.8
1,805,341	+		ABCV34_RS08465	0.79	-1.4
1,805,341	+		ABCV34_RS08465	0.79	-2.8
1,805,342	-		ABCV34_RS08465	0.80	-0.9
1,805,342	-		ABCV34_RS08465	0.80	-3.8
1,805,342	-		ABCV34_RS08465	0.80	-1.7
1,805,342	-		ABCV34_RS08465	0.80	-0.4
1,805,342	-		ABCV34_RS08465	0.80	-3.0
1,805,342	-		ABCV34_RS08465	0.80	-1.5
1,805,342	-		ABCV34_RS08465	0.80	+2.3
1,805,383	+		ABCV34_RS08465	0.86	-1.5
1,805,384	-		ABCV34_RS08465	0.86	-2.5
1,805,384	-		ABCV34_RS08465	0.86	-1.7
1,805,384	-		ABCV34_RS08465	0.86	-4.1
1,805,384	-		ABCV34_RS08465	0.86	-1.2
1,805,585	+				+1.2
1,805,585	+				-5.0
1,805,594	+				-1.4
1,805,675	+				-1.0
1,805,675	+				-2.4
1,805,675	+				-2.1
1,805,676	-				-3.8
1,805,716	+				-1.7
1,805,717	-				-1.4
1,805,717	-				+0.4
1,806,044	+		ABCV34_RS08470	0.47	+0.2
1,806,044	+		ABCV34_RS08470	0.47	-3.6
1,806,044	+		ABCV34_RS08470	0.47	-0.1
1,806,044	+		ABCV34_RS08470	0.47	-1.4
1,806,045	-		ABCV34_RS08470	0.47	-2.3
1,806,045	-		ABCV34_RS08470	0.47	-4.0
1,806,045	-		ABCV34_RS08470	0.47	-1.5
1,806,045	-		ABCV34_RS08470	0.47	+1.8
1,806,375	+		ABCV34_RS08470	0.89	-1.5
1,806,375	+		ABCV34_RS08470	0.89	-1.0
1,806,375	+		ABCV34_RS08470	0.89	-0.5
1,806,375	+		ABCV34_RS08470	0.89	-1.9
1,806,375	+		ABCV34_RS08470	0.89	-4.0
1,806,375	+		ABCV34_RS08470	0.89	+0.0
1,806,376	-		ABCV34_RS08470	0.89	+0.5
1,806,376	-		ABCV34_RS08470	0.89	-0.0
1,806,414	+				-2.6
1,806,414	+				+0.1
1,806,414	+				-0.9
1,806,414	+				-3.5
1,806,414	+				-3.0
1,806,414	+				-2.7
1,806,414	+				-0.8
1,806,414	+				-0.7
1,806,415	-				-0.1
1,806,415	-				-1.1
1,806,415	-				-0.9
1,806,415	-				-0.2
1,806,415	-				-1.9
1,806,415	-				+0.5
1,806,415	-				-1.4
1,806,415	-				-2.5
1,806,415	-				-0.4
1,806,415	-				-4.6
1,806,415	-				-2.0
1,806,415	-				-2.3
1,806,415	-				-1.4
1,806,415	-				-5.1
1,806,415	-				-2.0
1,806,415	-				-2.9
1,806,415	-				-0.5
1,806,415	-				-0.1
1,806,569	-				+0.2
1,806,569	-				-1.3
1,806,677	+		ABCV34_RS08475	0.21	-2.3
1,806,748	+		ABCV34_RS08475	0.31	+1.2
1,806,748	+		ABCV34_RS08475	0.31	+1.7
1,806,748	+		ABCV34_RS08475	0.31	-1.4
1,806,748	+		ABCV34_RS08475	0.31	-3.7
1,806,748	+		ABCV34_RS08475	0.31	-1.9
1,806,749	-		ABCV34_RS08475	0.31	-1.7
1,806,749	-		ABCV34_RS08475	0.31	-4.0
1,806,775	+		ABCV34_RS08475	0.35	-2.4
1,806,886	+		ABCV34_RS08475	0.50	-3.3
1,806,886	+		ABCV34_RS08475	0.50	-0.5
1,806,887	-		ABCV34_RS08475	0.51	-0.7
1,806,887	-		ABCV34_RS08475	0.51	-0.8
1,806,887	-		ABCV34_RS08475	0.51	-1.2
1,807,087	+		ABCV34_RS08475	0.79	-1.4
1,807,087	+		ABCV34_RS08475	0.79	+1.6
1,807,087	+		ABCV34_RS08475	0.79	-1.4
1,807,088	-		ABCV34_RS08475	0.79	-0.2
1,807,088	-		ABCV34_RS08475	0.79	-3.0
1,807,088	-		ABCV34_RS08475	0.79	-1.8
1,807,088	-		ABCV34_RS08475	0.79	+0.6
1,807,088	-		ABCV34_RS08475	0.79	-1.3
1,807,147	+		ABCV34_RS08475	0.87	-0.9
1,807,147	+		ABCV34_RS08475	0.87	-4.6
1,807,147	+		ABCV34_RS08475	0.87	-1.5
1,807,147	+		ABCV34_RS08475	0.87	+0.9
1,807,147	+		ABCV34_RS08475	0.87	+0.6
1,807,147	+		ABCV34_RS08475	0.87	-2.3
1,807,147	+		ABCV34_RS08475	0.87	-2.1
1,807,147	+		ABCV34_RS08475	0.87	-4.8
1,807,147	+		ABCV34_RS08475	0.87	+0.1
1,807,147	+		ABCV34_RS08475	0.87	-1.3
1,807,147	+		ABCV34_RS08475	0.87	-2.8
1,807,147	+		ABCV34_RS08475	0.87	-2.7
1,807,147	+		ABCV34_RS08475	0.87	-3.0
1,807,148	-		ABCV34_RS08475	0.87	-1.4
1,807,148	-		ABCV34_RS08475	0.87	-1.3
1,807,148	-		ABCV34_RS08475	0.87	-0.5
1,807,148	-		ABCV34_RS08475	0.87	-3.8
1,807,148	-		ABCV34_RS08475	0.87	-2.3
1,807,148	-		ABCV34_RS08475	0.87	-0.1
1,807,148	-		ABCV34_RS08475	0.87	-1.4
1,807,148	-		ABCV34_RS08475	0.87	-2.1
1,807,148	-		ABCV34_RS08475	0.87	-0.1
1,807,248	+				-2.5
1,807,248	+				-3.0
1,807,248	+				-2.8
1,807,266	+				-1.3
1,807,266	+				-3.6
1,807,266	+				-0.9
1,807,266	+				-2.8
1,807,266	+				-1.5
1,807,267	-				+1.1
1,807,267	-				+0.1
1,807,267	-				-1.0
1,807,267	-				-0.7
1,807,430	+		ABCV34_RS08480	0.10	-1.6
1,807,431	-		ABCV34_RS08480	0.10	-3.2
1,807,431	-		ABCV34_RS08480	0.10	+0.7