Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03495 and ABCV34_RS03500 are separated by 150 nucleotides ABCV34_RS03500 and ABCV34_RS03505 are separated by 47 nucleotides
ABCV34_RS03495: ABCV34_RS03495 - MFS transporter, at 766,363 to 767,598
_RS03495
ABCV34_RS03500: ABCV34_RS03500 - urea transporter, at 767,749 to 768,621
_RS03500
ABCV34_RS03505: ABCV34_RS03505 - chloride channel protein, at 768,669 to 770,588
_RS03505
Position (kb) 767
768
769 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 766.787 kb on + strand, within ABCV34_RS03495 at 766.787 kb on + strand, within ABCV34_RS03495 at 766.788 kb on - strand, within ABCV34_RS03495 at 766.788 kb on - strand, within ABCV34_RS03495 at 766.841 kb on + strand, within ABCV34_RS03495 at 766.841 kb on + strand, within ABCV34_RS03495 at 766.841 kb on + strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.842 kb on - strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.862 kb on + strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.863 kb on - strand, within ABCV34_RS03495 at 766.868 kb on + strand, within ABCV34_RS03495 at 766.868 kb on + strand, within ABCV34_RS03495 at 766.868 kb on + strand, within ABCV34_RS03495 at 766.868 kb on + strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.869 kb on - strand, within ABCV34_RS03495 at 766.989 kb on - strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.008 kb on + strand, within ABCV34_RS03495 at 767.009 kb on - strand, within ABCV34_RS03495 at 767.301 kb on + strand, within ABCV34_RS03495 at 767.447 kb on + strand, within ABCV34_RS03495 at 767.447 kb on + strand, within ABCV34_RS03495 at 767.447 kb on + strand, within ABCV34_RS03495 at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.652 kb on + strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.653 kb on - strand at 767.666 kb on + strand at 767.668 kb on + strand at 767.669 kb on - strand at 767.669 kb on - strand at 767.676 kb on - strand at 767.714 kb on - strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.748 kb on + strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.749 kb on - strand at 767.792 kb on + strand at 767.792 kb on + strand at 767.933 kb on - strand, within ABCV34_RS03500 at 767.971 kb on + strand, within ABCV34_RS03500 at 767.971 kb on + strand, within ABCV34_RS03500 at 767.972 kb on - strand, within ABCV34_RS03500 at 768.109 kb on + strand, within ABCV34_RS03500 at 768.109 kb on + strand, within ABCV34_RS03500 at 768.109 kb on + strand, within ABCV34_RS03500 at 768.110 kb on - strand, within ABCV34_RS03500 at 768.111 kb on + strand, within ABCV34_RS03500 at 768.111 kb on + strand, within ABCV34_RS03500 at 768.112 kb on - strand, within ABCV34_RS03500 at 768.112 kb on - strand, within ABCV34_RS03500 at 768.112 kb on - strand, within ABCV34_RS03500 at 768.294 kb on + strand, within ABCV34_RS03500 at 768.294 kb on + strand, within ABCV34_RS03500 at 768.294 kb on + strand, within ABCV34_RS03500 at 768.294 kb on + strand, within ABCV34_RS03500 at 768.294 kb on + strand, within ABCV34_RS03500 at 768.295 kb on - strand, within ABCV34_RS03500 at 768.295 kb on - strand, within ABCV34_RS03500 at 768.295 kb on - strand, within ABCV34_RS03500 at 768.413 kb on + strand, within ABCV34_RS03500 at 768.415 kb on + strand, within ABCV34_RS03500 at 768.416 kb on - strand, within ABCV34_RS03500 at 768.416 kb on - strand, within ABCV34_RS03500 at 768.613 kb on - strand at 768.613 kb on - strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.662 kb on + strand at 768.663 kb on - strand at 768.663 kb on - strand at 768.663 kb on - strand at 768.921 kb on + strand, within ABCV34_RS03505 at 768.921 kb on + strand, within ABCV34_RS03505 at 768.921 kb on + strand, within ABCV34_RS03505 at 768.922 kb on - strand, within ABCV34_RS03505 at 768.922 kb on - strand, within ABCV34_RS03505 at 768.922 kb on - strand, within ABCV34_RS03505 at 769.043 kb on + strand, within ABCV34_RS03505 at 769.494 kb on + strand, within ABCV34_RS03505 at 769.494 kb on + strand, within ABCV34_RS03505 at 769.494 kb on + strand, within ABCV34_RS03505 at 769.495 kb on - strand, within ABCV34_RS03505 at 769.495 kb on - strand, within ABCV34_RS03505 at 769.495 kb on - strand, within ABCV34_RS03505 at 769.495 kb on - strand, within ABCV34_RS03505 at 769.495 kb on - strand, within ABCV34_RS03505 at 769.551 kb on + strand, within ABCV34_RS03505 at 769.551 kb on + strand, within ABCV34_RS03505 at 769.551 kb on + strand, within ABCV34_RS03505 at 769.551 kb on + strand, within ABCV34_RS03505 at 769.551 kb on + strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505 at 769.552 kb on - strand, within ABCV34_RS03505
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 766,787 + ABCV34_RS03495 0.34 -0.4 766,787 + ABCV34_RS03495 0.34 -2.2 766,788 - ABCV34_RS03495 0.34 -3.0 766,788 - ABCV34_RS03495 0.34 -1.6 766,841 + ABCV34_RS03495 0.39 -0.9 766,841 + ABCV34_RS03495 0.39 -0.9 766,841 + ABCV34_RS03495 0.39 -2.0 766,842 - ABCV34_RS03495 0.39 -1.4 766,842 - ABCV34_RS03495 0.39 -0.4 766,842 - ABCV34_RS03495 0.39 -1.4 766,842 - ABCV34_RS03495 0.39 -2.3 766,842 - ABCV34_RS03495 0.39 -0.9 766,842 - ABCV34_RS03495 0.39 -1.5 766,862 + ABCV34_RS03495 0.40 +0.4 766,862 + ABCV34_RS03495 0.40 +0.4 766,862 + ABCV34_RS03495 0.40 -0.9 766,862 + ABCV34_RS03495 0.40 +1.8 766,862 + ABCV34_RS03495 0.40 -2.6 766,862 + ABCV34_RS03495 0.40 -0.6 766,863 - ABCV34_RS03495 0.40 -1.2 766,863 - ABCV34_RS03495 0.40 -3.3 766,863 - ABCV34_RS03495 0.40 -3.5 766,863 - ABCV34_RS03495 0.40 -2.6 766,863 - ABCV34_RS03495 0.40 -3.1 766,863 - ABCV34_RS03495 0.40 -2.8 766,863 - ABCV34_RS03495 0.40 -0.6 766,863 - ABCV34_RS03495 0.40 +1.0 766,863 - ABCV34_RS03495 0.40 -0.7 766,863 - ABCV34_RS03495 0.40 +1.1 766,868 + ABCV34_RS03495 0.41 -1.4 766,868 + ABCV34_RS03495 0.41 -0.0 766,868 + ABCV34_RS03495 0.41 +1.7 766,868 + ABCV34_RS03495 0.41 -3.8 766,869 - ABCV34_RS03495 0.41 -0.4 766,869 - ABCV34_RS03495 0.41 -0.6 766,869 - ABCV34_RS03495 0.41 -0.5 766,869 - ABCV34_RS03495 0.41 -2.4 766,869 - ABCV34_RS03495 0.41 -1.9 766,869 - ABCV34_RS03495 0.41 -0.6 766,869 - ABCV34_RS03495 0.41 -1.1 766,869 - ABCV34_RS03495 0.41 +0.9 766,989 - ABCV34_RS03495 0.51 -1.7 767,008 + ABCV34_RS03495 0.52 +1.2 767,008 + ABCV34_RS03495 0.52 +1.4 767,008 + ABCV34_RS03495 0.52 -1.7 767,008 + ABCV34_RS03495 0.52 -3.9 767,008 + ABCV34_RS03495 0.52 -1.7 767,008 + ABCV34_RS03495 0.52 -0.4 767,008 + ABCV34_RS03495 0.52 -0.4 767,008 + ABCV34_RS03495 0.52 -3.1 767,009 - ABCV34_RS03495 0.52 -0.9 767,301 + ABCV34_RS03495 0.76 -1.4 767,447 + ABCV34_RS03495 0.88 -1.7 767,447 + ABCV34_RS03495 0.88 -0.6 767,447 + ABCV34_RS03495 0.88 -0.9 767,652 + -4.8 767,652 + -1.2 767,652 + -2.2 767,652 + -2.0 767,652 + -2.0 767,652 + -5.7 767,652 + -1.2 767,652 + -0.1 767,652 + -4.9 767,652 + -2.5 767,653 - -2.4 767,653 - +1.0 767,653 - -4.1 767,653 - -4.5 767,653 - -0.3 767,653 - -2.2 767,653 - +0.1 767,653 - -1.9 767,653 - -3.1 767,653 - -2.1 767,653 - -1.2 767,653 - -0.4 767,666 + -0.0 767,668 + -1.6 767,669 - +0.4 767,669 - -1.6 767,676 - +0.2 767,714 - -2.0 767,748 + -4.2 767,748 + +0.4 767,748 + -1.2 767,748 + -2.0 767,748 + -1.4 767,748 + -3.9 767,748 + -3.1 767,748 + -0.5 767,748 + +0.3 767,748 + +0.4 767,748 + -0.5 767,748 + -4.1 767,749 - -0.9 767,749 - -1.0 767,749 - -1.7 767,749 - -0.0 767,749 - -1.5 767,749 - -1.9 767,749 - +0.2 767,749 - -1.2 767,749 - -0.0 767,749 - -0.3 767,749 - -1.2 767,749 - -3.5 767,749 - -1.0 767,749 - +0.4 767,749 - -3.1 767,749 - -3.4 767,749 - -2.0 767,792 + +3.5 767,792 + -1.5 767,933 - ABCV34_RS03500 0.21 -2.7 767,971 + ABCV34_RS03500 0.25 -1.8 767,971 + ABCV34_RS03500 0.25 -0.1 767,972 - ABCV34_RS03500 0.26 -1.6 768,109 + ABCV34_RS03500 0.41 -2.2 768,109 + ABCV34_RS03500 0.41 +0.9 768,109 + ABCV34_RS03500 0.41 -4.2 768,110 - ABCV34_RS03500 0.41 -1.4 768,111 + ABCV34_RS03500 0.41 -0.2 768,111 + ABCV34_RS03500 0.41 -1.5 768,112 - ABCV34_RS03500 0.42 -1.7 768,112 - ABCV34_RS03500 0.42 +1.3 768,112 - ABCV34_RS03500 0.42 -1.4 768,294 + ABCV34_RS03500 0.62 -1.0 768,294 + ABCV34_RS03500 0.62 +0.0 768,294 + ABCV34_RS03500 0.62 -0.8 768,294 + ABCV34_RS03500 0.62 -2.0 768,294 + ABCV34_RS03500 0.62 -4.0 768,295 - ABCV34_RS03500 0.63 +1.4 768,295 - ABCV34_RS03500 0.63 +2.0 768,295 - ABCV34_RS03500 0.63 +0.8 768,413 + ABCV34_RS03500 0.76 -1.6 768,415 + ABCV34_RS03500 0.76 -2.0 768,416 - ABCV34_RS03500 0.76 +1.7 768,416 - ABCV34_RS03500 0.76 +1.8 768,613 - +2.0 768,613 - -2.6 768,662 + -1.3 768,662 + +2.0 768,662 + +0.8 768,662 + -3.4 768,662 + +0.2 768,662 + -1.6 768,662 + -0.6 768,663 - +0.3 768,663 - +1.4 768,663 - -0.1 768,921 + ABCV34_RS03505 0.13 -2.1 768,921 + ABCV34_RS03505 0.13 -0.7 768,921 + ABCV34_RS03505 0.13 -2.1 768,922 - ABCV34_RS03505 0.13 -0.2 768,922 - ABCV34_RS03505 0.13 -3.5 768,922 - ABCV34_RS03505 0.13 +0.5 769,043 + ABCV34_RS03505 0.19 -1.1 769,494 + ABCV34_RS03505 0.43 -2.0 769,494 + ABCV34_RS03505 0.43 -2.0 769,494 + ABCV34_RS03505 0.43 -3.5 769,495 - ABCV34_RS03505 0.43 -0.7 769,495 - ABCV34_RS03505 0.43 -2.2 769,495 - ABCV34_RS03505 0.43 -1.8 769,495 - ABCV34_RS03505 0.43 -1.4 769,495 - ABCV34_RS03505 0.43 -2.6 769,551 + ABCV34_RS03505 0.46 -2.7 769,551 + ABCV34_RS03505 0.46 -1.9 769,551 + ABCV34_RS03505 0.46 -5.1 769,551 + ABCV34_RS03505 0.46 -0.5 769,551 + ABCV34_RS03505 0.46 -2.8 769,552 - ABCV34_RS03505 0.46 -2.1 769,552 - ABCV34_RS03505 0.46 +1.4 769,552 - ABCV34_RS03505 0.46 -1.9 769,552 - ABCV34_RS03505 0.46 +1.1 769,552 - ABCV34_RS03505 0.46 -0.5 769,552 - ABCV34_RS03505 0.46 -1.6 769,552 - ABCV34_RS03505 0.46 -2.1
Or see this region's nucleotide sequence