Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02225

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02220 and ABCV34_RS02225 are separated by 154 nucleotidesABCV34_RS02225 and ABCV34_RS02230 overlap by 4 nucleotidesABCV34_RS02230 and ABCV34_RS02235 are separated by 29 nucleotides ABCV34_RS02220: ABCV34_RS02220 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 497,844 to 498,995 _RS02220 ABCV34_RS02225: ABCV34_RS02225 - exodeoxyribonuclease VII small subunit, at 499,150 to 499,428 _RS02225 ABCV34_RS02230: ABCV34_RS02230 - polyprenyl synthetase family protein, at 499,425 to 500,345 _RS02230 ABCV34_RS02235: ABCV34_RS02235 - 1-deoxy-D-xylulose-5-phosphate synthase, at 500,375 to 502,237 _RS02235 Position (kb) 499 500Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 498.158 kb on - strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.184 kb on + strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.185 kb on - strand, within ABCV34_RS02220at 498.260 kb on - strand, within ABCV34_RS02220at 498.269 kb on + strand, within ABCV34_RS02220at 498.394 kb on + strand, within ABCV34_RS02220at 498.394 kb on + strand, within ABCV34_RS02220at 498.394 kb on + strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.395 kb on - strand, within ABCV34_RS02220at 498.406 kb on + strand, within ABCV34_RS02220at 498.406 kb on + strand, within ABCV34_RS02220at 498.406 kb on + strand, within ABCV34_RS02220at 498.406 kb on + strand, within ABCV34_RS02220at 498.407 kb on - strand, within ABCV34_RS02220at 498.407 kb on - strand, within ABCV34_RS02220at 498.407 kb on - strand, within ABCV34_RS02220at 498.433 kb on + strand, within ABCV34_RS02220at 498.434 kb on - strand, within ABCV34_RS02220at 498.434 kb on - strand, within ABCV34_RS02220at 498.434 kb on - strand, within ABCV34_RS02220at 498.585 kb on + strand, within ABCV34_RS02220at 498.586 kb on - strand, within ABCV34_RS02220at 498.586 kb on - strand, within ABCV34_RS02220at 498.640 kb on + strand, within ABCV34_RS02220at 498.641 kb on - strand, within ABCV34_RS02220at 498.641 kb on - strand, within ABCV34_RS02220at 498.641 kb on - strand, within ABCV34_RS02220at 498.641 kb on - strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.759 kb on + strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.760 kb on - strand, within ABCV34_RS02220at 498.874 kb on + strand, within ABCV34_RS02220at 498.874 kb on + strand, within ABCV34_RS02220at 498.874 kb on + strand, within ABCV34_RS02220at 498.875 kb on - strand, within ABCV34_RS02220at 498.934 kb on + strandat 498.934 kb on + strandat 498.935 kb on - strandat 498.935 kb on - strandat 498.935 kb on - strandat 498.935 kb on - strandat 498.935 kb on - strandat 499.060 kb on + strandat 499.060 kb on + strandat 499.060 kb on + strandat 499.060 kb on + strandat 499.061 kb on - strandat 499.061 kb on - strandat 499.061 kb on - strandat 499.061 kb on - strandat 499.061 kb on - strandat 499.115 kb on + strandat 499.115 kb on + strandat 499.115 kb on + strandat 499.115 kb on + strandat 499.116 kb on - strandat 499.116 kb on - strandat 499.116 kb on - strandat 499.300 kb on + strand, within ABCV34_RS02225at 499.329 kb on - strand, within ABCV34_RS02225at 500.322 kb on + strandat 500.322 kb on + strandat 500.322 kb on + strandat 500.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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498,158 - ABCV34_RS02220 0.27 -2.3
498,184 + ABCV34_RS02220 0.30 -2.0
498,184 + ABCV34_RS02220 0.30 -0.4
498,184 + ABCV34_RS02220 0.30 +0.4
498,184 + ABCV34_RS02220 0.30 -0.4
498,184 + ABCV34_RS02220 0.30 -0.1
498,184 + ABCV34_RS02220 0.30 -3.3
498,184 + ABCV34_RS02220 0.30 -0.5
498,184 + ABCV34_RS02220 0.30 -1.3
498,184 + ABCV34_RS02220 0.30 -2.3
498,184 + ABCV34_RS02220 0.30 +0.0
498,184 + ABCV34_RS02220 0.30 -0.8
498,184 + ABCV34_RS02220 0.30 -0.8
498,184 + ABCV34_RS02220 0.30 -3.3
498,184 + ABCV34_RS02220 0.30 -1.5
498,184 + ABCV34_RS02220 0.30 +0.5
498,185 - ABCV34_RS02220 0.30 -2.5
498,185 - ABCV34_RS02220 0.30 -0.9
498,185 - ABCV34_RS02220 0.30 +1.2
498,185 - ABCV34_RS02220 0.30 +2.7
498,185 - ABCV34_RS02220 0.30 -2.2
498,185 - ABCV34_RS02220 0.30 -1.4
498,185 - ABCV34_RS02220 0.30 +0.6
498,260 - ABCV34_RS02220 0.36 -0.3
498,269 + ABCV34_RS02220 0.37 -2.2
498,394 + ABCV34_RS02220 0.48 -2.7
498,394 + ABCV34_RS02220 0.48 -3.3
498,394 + ABCV34_RS02220 0.48 -0.6
498,395 - ABCV34_RS02220 0.48 -1.6
498,395 - ABCV34_RS02220 0.48 -3.5
498,395 - ABCV34_RS02220 0.48 -0.4
498,395 - ABCV34_RS02220 0.48 -1.5
498,395 - ABCV34_RS02220 0.48 +1.4
498,395 - ABCV34_RS02220 0.48 -0.3
498,395 - ABCV34_RS02220 0.48 -0.8
498,395 - ABCV34_RS02220 0.48 -2.9
498,395 - ABCV34_RS02220 0.48 -2.3
498,395 - ABCV34_RS02220 0.48 -0.8
498,395 - ABCV34_RS02220 0.48 -3.7
498,406 + ABCV34_RS02220 0.49 +1.6
498,406 + ABCV34_RS02220 0.49 -2.0
498,406 + ABCV34_RS02220 0.49 -2.0
498,406 + ABCV34_RS02220 0.49 -0.8
498,407 - ABCV34_RS02220 0.49 -3.0
498,407 - ABCV34_RS02220 0.49 -3.2
498,407 - ABCV34_RS02220 0.49 -1.2
498,433 + ABCV34_RS02220 0.51 +0.8
498,434 - ABCV34_RS02220 0.51 -0.8
498,434 - ABCV34_RS02220 0.51 -1.6
498,434 - ABCV34_RS02220 0.51 -1.0
498,585 + ABCV34_RS02220 0.64 +0.6
498,586 - ABCV34_RS02220 0.64 -0.1
498,586 - ABCV34_RS02220 0.64 -4.6
498,640 + ABCV34_RS02220 0.69 -0.3
498,641 - ABCV34_RS02220 0.69 -4.1
498,641 - ABCV34_RS02220 0.69 -2.0
498,641 - ABCV34_RS02220 0.69 +0.4
498,641 - ABCV34_RS02220 0.69 -1.5
498,759 + ABCV34_RS02220 0.79 -1.5
498,759 + ABCV34_RS02220 0.79 -3.6
498,759 + ABCV34_RS02220 0.79 -0.6
498,759 + ABCV34_RS02220 0.79 -3.4
498,759 + ABCV34_RS02220 0.79 -3.2
498,759 + ABCV34_RS02220 0.79 +0.8
498,759 + ABCV34_RS02220 0.79 +0.5
498,759 + ABCV34_RS02220 0.79 +1.3
498,759 + ABCV34_RS02220 0.79 -1.0
498,759 + ABCV34_RS02220 0.79 -0.3
498,760 - ABCV34_RS02220 0.80 -1.8
498,760 - ABCV34_RS02220 0.80 +0.0
498,760 - ABCV34_RS02220 0.80 -2.0
498,760 - ABCV34_RS02220 0.80 +2.6
498,760 - ABCV34_RS02220 0.80 -1.3
498,760 - ABCV34_RS02220 0.80 +0.5
498,760 - ABCV34_RS02220 0.80 +2.3
498,874 + ABCV34_RS02220 0.89 -0.8
498,874 + ABCV34_RS02220 0.89 -2.2
498,874 + ABCV34_RS02220 0.89 -2.2
498,875 - ABCV34_RS02220 0.89 -3.7
498,934 + -1.6
498,934 + +1.6
498,935 - -1.9
498,935 - -2.7
498,935 - -2.0
498,935 - -1.2
498,935 - -0.6
499,060 + -1.1
499,060 + -1.6
499,060 + +0.9
499,060 + +0.3
499,061 - -2.0
499,061 - +1.7
499,061 - -2.6
499,061 - -2.3
499,061 - -2.4
499,115 + -1.9
499,115 + -2.6
499,115 + -1.6
499,115 + -0.9
499,116 - +2.9
499,116 - -0.5
499,116 - +2.2
499,300 + ABCV34_RS02225 0.54 +1.9
499,329 - ABCV34_RS02225 0.64 -4.4
500,322 + -1.3
500,322 + -1.6
500,322 + -1.2
500,322 + -1.0

Or see this region's nucleotide sequence