Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS01570 and ABCV34_RS01575 overlap by 4 nucleotides ABCV34_RS01575 and ABCV34_RS01580 overlap by 4 nucleotides ABCV34_RS01580 and ABCV34_RS01585 overlap by 4 nucleotides
ABCV34_RS01570: ABCV34_RS01570 - nitrous oxide reductase accessory protein NosL, at 336,253 to 336,801
_RS01570
ABCV34_RS01575: ABCV34_RS01575 - ABC transporter permease, at 336,798 to 337,628
_RS01575
ABCV34_RS01580: ABCV34_RS01580 - ABC transporter ATP-binding protein, at 337,625 to 338,527
_RS01580
ABCV34_RS01585: ABCV34_RS01585 - nitrous oxide reductase family maturation protein NosD, at 338,524 to 339,798
_RS01585
Position (kb) 337
338
339 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 336.653 kb on + strand, within ABCV34_RS01570 at 336.653 kb on + strand, within ABCV34_RS01570 at 336.653 kb on + strand, within ABCV34_RS01570 at 336.653 kb on + strand, within ABCV34_RS01570 at 336.653 kb on + strand, within ABCV34_RS01570 at 336.654 kb on - strand, within ABCV34_RS01570 at 336.654 kb on - strand, within ABCV34_RS01570 at 336.801 kb on + strand at 336.801 kb on + strand at 336.802 kb on - strand at 336.967 kb on + strand, within ABCV34_RS01575 at 337.066 kb on + strand, within ABCV34_RS01575 at 337.067 kb on - strand, within ABCV34_RS01575 at 337.405 kb on + strand, within ABCV34_RS01575 at 337.406 kb on - strand, within ABCV34_RS01575 at 337.406 kb on - strand, within ABCV34_RS01575 at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.656 kb on + strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 337.657 kb on - strand at 338.004 kb on + strand, within ABCV34_RS01580 at 338.004 kb on + strand, within ABCV34_RS01580 at 338.004 kb on + strand, within ABCV34_RS01580 at 338.005 kb on - strand, within ABCV34_RS01580 at 338.005 kb on - strand, within ABCV34_RS01580 at 338.005 kb on - strand, within ABCV34_RS01580 at 338.005 kb on - strand, within ABCV34_RS01580 at 338.214 kb on + strand, within ABCV34_RS01580 at 338.214 kb on + strand, within ABCV34_RS01580 at 338.214 kb on + strand, within ABCV34_RS01580 at 338.214 kb on + strand, within ABCV34_RS01580 at 338.215 kb on - strand, within ABCV34_RS01580 at 338.444 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.638 kb on + strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.639 kb on - strand at 338.780 kb on + strand, within ABCV34_RS01585 at 338.780 kb on + strand, within ABCV34_RS01585 at 338.780 kb on + strand, within ABCV34_RS01585 at 338.781 kb on - strand, within ABCV34_RS01585 at 338.781 kb on - strand, within ABCV34_RS01585 at 338.781 kb on - strand, within ABCV34_RS01585 at 338.781 kb on - strand, within ABCV34_RS01585 at 338.828 kb on + strand, within ABCV34_RS01585 at 338.828 kb on + strand, within ABCV34_RS01585 at 338.828 kb on + strand, within ABCV34_RS01585 at 338.828 kb on + strand, within ABCV34_RS01585 at 338.828 kb on + strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.829 kb on - strand, within ABCV34_RS01585 at 338.867 kb on + strand, within ABCV34_RS01585 at 338.867 kb on + strand, within ABCV34_RS01585 at 338.868 kb on - strand, within ABCV34_RS01585 at 338.868 kb on - strand, within ABCV34_RS01585 at 338.868 kb on - strand, within ABCV34_RS01585 at 338.894 kb on + strand, within ABCV34_RS01585 at 338.894 kb on + strand, within ABCV34_RS01585 at 338.894 kb on + strand, within ABCV34_RS01585 at 338.894 kb on + strand, within ABCV34_RS01585 at 338.894 kb on + strand, within ABCV34_RS01585 at 338.895 kb on - strand, within ABCV34_RS01585 at 338.895 kb on - strand, within ABCV34_RS01585 at 338.895 kb on - strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.940 kb on + strand, within ABCV34_RS01585 at 338.941 kb on - strand, within ABCV34_RS01585 at 338.941 kb on - strand, within ABCV34_RS01585 at 338.941 kb on - strand, within ABCV34_RS01585 at 338.957 kb on + strand, within ABCV34_RS01585 at 338.957 kb on + strand, within ABCV34_RS01585 at 338.958 kb on - strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.155 kb on + strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.156 kb on - strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.161 kb on + strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.162 kb on - strand, within ABCV34_RS01585 at 339.173 kb on + strand, within ABCV34_RS01585 at 339.173 kb on + strand, within ABCV34_RS01585 at 339.205 kb on + strand, within ABCV34_RS01585 at 339.206 kb on - strand, within ABCV34_RS01585 at 339.206 kb on - strand, within ABCV34_RS01585 at 339.206 kb on - strand, within ABCV34_RS01585 at 339.345 kb on + strand, within ABCV34_RS01585 at 339.345 kb on + strand, within ABCV34_RS01585 at 339.386 kb on + strand, within ABCV34_RS01585 at 339.386 kb on + strand, within ABCV34_RS01585 at 339.386 kb on + strand, within ABCV34_RS01585 at 339.387 kb on - strand, within ABCV34_RS01585 at 339.387 kb on - strand, within ABCV34_RS01585 at 339.387 kb on - strand, within ABCV34_RS01585 at 339.387 kb on - strand, within ABCV34_RS01585 at 339.421 kb on + strand, within ABCV34_RS01585 at 339.421 kb on + strand, within ABCV34_RS01585 at 339.421 kb on + strand, within ABCV34_RS01585 at 339.421 kb on + strand, within ABCV34_RS01585 at 339.421 kb on + strand, within ABCV34_RS01585
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 336,653 + ABCV34_RS01570 0.73 -1.6 336,653 + ABCV34_RS01570 0.73 -1.5 336,653 + ABCV34_RS01570 0.73 -2.2 336,653 + ABCV34_RS01570 0.73 -3.4 336,653 + ABCV34_RS01570 0.73 -3.4 336,654 - ABCV34_RS01570 0.73 -2.6 336,654 - ABCV34_RS01570 0.73 +2.6 336,801 + -0.8 336,801 + -2.8 336,802 - -4.9 336,967 + ABCV34_RS01575 0.20 -3.6 337,066 + ABCV34_RS01575 0.32 +1.6 337,067 - ABCV34_RS01575 0.32 -1.6 337,405 + ABCV34_RS01575 0.73 +0.7 337,406 - ABCV34_RS01575 0.73 -1.7 337,406 - ABCV34_RS01575 0.73 -2.5 337,656 + -2.6 337,656 + -2.4 337,656 + -2.2 337,656 + -1.0 337,656 + -2.0 337,656 + -0.5 337,656 + +0.1 337,656 + -3.0 337,656 + -1.3 337,656 + -2.5 337,656 + +1.0 337,656 + -3.3 337,656 + +2.6 337,656 + -1.8 337,656 + -2.8 337,656 + -1.7 337,656 + -1.3 337,657 - -2.5 337,657 - +1.2 337,657 - -1.8 337,657 - -3.0 337,657 - +0.6 337,657 - +0.4 337,657 - -0.5 337,657 - -1.6 337,657 - -2.4 338,004 + ABCV34_RS01580 0.42 -0.1 338,004 + ABCV34_RS01580 0.42 -0.2 338,004 + ABCV34_RS01580 0.42 +0.7 338,005 - ABCV34_RS01580 0.42 -0.0 338,005 - ABCV34_RS01580 0.42 +0.4 338,005 - ABCV34_RS01580 0.42 -1.8 338,005 - ABCV34_RS01580 0.42 -0.2 338,214 + ABCV34_RS01580 0.65 +1.7 338,214 + ABCV34_RS01580 0.65 -0.2 338,214 + ABCV34_RS01580 0.65 -2.9 338,214 + ABCV34_RS01580 0.65 -0.4 338,215 - ABCV34_RS01580 0.65 +2.5 338,444 + +2.9 338,638 + -2.0 338,638 + -3.3 338,638 + -0.6 338,638 + -1.3 338,638 + +2.4 338,638 + -1.9 338,638 + -3.8 338,638 + -0.2 338,639 - +0.2 338,639 - -4.0 338,639 - -1.7 338,639 - -0.5 338,639 - -3.5 338,639 - -1.9 338,639 - +0.8 338,639 - -3.1 338,639 - -2.7 338,639 - -1.1 338,639 - -1.2 338,780 + ABCV34_RS01585 0.20 -1.6 338,780 + ABCV34_RS01585 0.20 +0.3 338,780 + ABCV34_RS01585 0.20 -2.2 338,781 - ABCV34_RS01585 0.20 -4.3 338,781 - ABCV34_RS01585 0.20 -3.1 338,781 - ABCV34_RS01585 0.20 -2.4 338,781 - ABCV34_RS01585 0.20 -0.7 338,828 + ABCV34_RS01585 0.24 -0.6 338,828 + ABCV34_RS01585 0.24 -1.6 338,828 + ABCV34_RS01585 0.24 -4.2 338,828 + ABCV34_RS01585 0.24 -1.7 338,828 + ABCV34_RS01585 0.24 +0.1 338,829 - ABCV34_RS01585 0.24 -2.3 338,829 - ABCV34_RS01585 0.24 -1.6 338,829 - ABCV34_RS01585 0.24 -4.1 338,829 - ABCV34_RS01585 0.24 -2.0 338,829 - ABCV34_RS01585 0.24 -0.8 338,829 - ABCV34_RS01585 0.24 -1.6 338,829 - ABCV34_RS01585 0.24 -5.0 338,867 + ABCV34_RS01585 0.27 -1.3 338,867 + ABCV34_RS01585 0.27 -1.6 338,868 - ABCV34_RS01585 0.27 -4.1 338,868 - ABCV34_RS01585 0.27 -0.5 338,868 - ABCV34_RS01585 0.27 -2.5 338,894 + ABCV34_RS01585 0.29 -2.6 338,894 + ABCV34_RS01585 0.29 -2.1 338,894 + ABCV34_RS01585 0.29 -1.6 338,894 + ABCV34_RS01585 0.29 -1.3 338,894 + ABCV34_RS01585 0.29 -3.8 338,895 - ABCV34_RS01585 0.29 -3.2 338,895 - ABCV34_RS01585 0.29 -0.3 338,895 - ABCV34_RS01585 0.29 -0.4 338,940 + ABCV34_RS01585 0.33 +0.8 338,940 + ABCV34_RS01585 0.33 -0.1 338,940 + ABCV34_RS01585 0.33 -2.7 338,940 + ABCV34_RS01585 0.33 -1.2 338,940 + ABCV34_RS01585 0.33 +1.0 338,940 + ABCV34_RS01585 0.33 +1.3 338,941 - ABCV34_RS01585 0.33 +1.0 338,941 - ABCV34_RS01585 0.33 -1.0 338,941 - ABCV34_RS01585 0.33 -1.9 338,957 + ABCV34_RS01585 0.34 +0.1 338,957 + ABCV34_RS01585 0.34 -1.7 338,958 - ABCV34_RS01585 0.34 -2.5 339,155 + ABCV34_RS01585 0.49 -0.4 339,155 + ABCV34_RS01585 0.49 +2.8 339,155 + ABCV34_RS01585 0.49 -0.5 339,155 + ABCV34_RS01585 0.49 +0.7 339,155 + ABCV34_RS01585 0.49 -3.1 339,155 + ABCV34_RS01585 0.49 +0.1 339,155 + ABCV34_RS01585 0.49 -2.7 339,155 + ABCV34_RS01585 0.49 -1.2 339,155 + ABCV34_RS01585 0.49 -2.3 339,155 + ABCV34_RS01585 0.49 -2.9 339,155 + ABCV34_RS01585 0.49 -3.8 339,155 + ABCV34_RS01585 0.49 +1.0 339,155 + ABCV34_RS01585 0.49 +0.5 339,155 + ABCV34_RS01585 0.49 +0.1 339,155 + ABCV34_RS01585 0.49 -4.4 339,155 + ABCV34_RS01585 0.49 -2.5 339,156 - ABCV34_RS01585 0.50 -1.7 339,156 - ABCV34_RS01585 0.50 -1.6 339,156 - ABCV34_RS01585 0.50 +1.7 339,156 - ABCV34_RS01585 0.50 -1.9 339,156 - ABCV34_RS01585 0.50 -2.2 339,156 - ABCV34_RS01585 0.50 -5.4 339,156 - ABCV34_RS01585 0.50 -0.7 339,156 - ABCV34_RS01585 0.50 -1.3 339,156 - ABCV34_RS01585 0.50 -1.0 339,156 - ABCV34_RS01585 0.50 -1.4 339,156 - ABCV34_RS01585 0.50 -3.0 339,156 - ABCV34_RS01585 0.50 -4.1 339,156 - ABCV34_RS01585 0.50 -4.3 339,156 - ABCV34_RS01585 0.50 -0.6 339,156 - ABCV34_RS01585 0.50 +2.6 339,156 - ABCV34_RS01585 0.50 -2.5 339,156 - ABCV34_RS01585 0.50 +2.1 339,156 - ABCV34_RS01585 0.50 -0.6 339,156 - ABCV34_RS01585 0.50 +1.4 339,156 - ABCV34_RS01585 0.50 -4.3 339,156 - ABCV34_RS01585 0.50 -0.3 339,156 - ABCV34_RS01585 0.50 -2.0 339,156 - ABCV34_RS01585 0.50 +2.2 339,156 - ABCV34_RS01585 0.50 -0.2 339,156 - ABCV34_RS01585 0.50 -0.6 339,156 - ABCV34_RS01585 0.50 -2.0 339,156 - ABCV34_RS01585 0.50 -2.2 339,156 - ABCV34_RS01585 0.50 -0.8 339,156 - ABCV34_RS01585 0.50 -3.1 339,161 + ABCV34_RS01585 0.50 -1.5 339,161 + ABCV34_RS01585 0.50 +2.3 339,161 + ABCV34_RS01585 0.50 -1.7 339,161 + ABCV34_RS01585 0.50 -2.3 339,161 + ABCV34_RS01585 0.50 -1.7 339,161 + ABCV34_RS01585 0.50 +1.8 339,161 + ABCV34_RS01585 0.50 -0.6 339,161 + ABCV34_RS01585 0.50 -3.2 339,161 + ABCV34_RS01585 0.50 +0.4 339,161 + ABCV34_RS01585 0.50 -0.4 339,161 + ABCV34_RS01585 0.50 -0.3 339,161 + ABCV34_RS01585 0.50 +1.4 339,161 + ABCV34_RS01585 0.50 -4.7 339,161 + ABCV34_RS01585 0.50 +1.7 339,161 + ABCV34_RS01585 0.50 -1.4 339,161 + ABCV34_RS01585 0.50 +2.0 339,161 + ABCV34_RS01585 0.50 -1.6 339,161 + ABCV34_RS01585 0.50 -1.0 339,161 + ABCV34_RS01585 0.50 -2.5 339,162 - ABCV34_RS01585 0.50 -0.6 339,162 - ABCV34_RS01585 0.50 -1.6 339,162 - ABCV34_RS01585 0.50 -4.2 339,162 - ABCV34_RS01585 0.50 -1.0 339,162 - ABCV34_RS01585 0.50 +1.6 339,162 - ABCV34_RS01585 0.50 -1.0 339,162 - ABCV34_RS01585 0.50 +2.1 339,162 - ABCV34_RS01585 0.50 -2.8 339,162 - ABCV34_RS01585 0.50 -2.0 339,162 - ABCV34_RS01585 0.50 +1.8 339,162 - ABCV34_RS01585 0.50 -3.2 339,162 - ABCV34_RS01585 0.50 -3.8 339,162 - ABCV34_RS01585 0.50 -0.5 339,162 - ABCV34_RS01585 0.50 -1.3 339,162 - ABCV34_RS01585 0.50 -0.0 339,162 - ABCV34_RS01585 0.50 +0.4 339,173 + ABCV34_RS01585 0.51 -0.8 339,173 + ABCV34_RS01585 0.51 -0.9 339,205 + ABCV34_RS01585 0.53 -1.1 339,206 - ABCV34_RS01585 0.53 +0.5 339,206 - ABCV34_RS01585 0.53 -1.1 339,206 - ABCV34_RS01585 0.53 -2.8 339,345 + ABCV34_RS01585 0.64 -0.6 339,345 + ABCV34_RS01585 0.64 -0.8 339,386 + ABCV34_RS01585 0.68 -3.5 339,386 + ABCV34_RS01585 0.68 -2.6 339,386 + ABCV34_RS01585 0.68 +0.0 339,387 - ABCV34_RS01585 0.68 +0.2 339,387 - ABCV34_RS01585 0.68 -2.6 339,387 - ABCV34_RS01585 0.68 -3.1 339,387 - ABCV34_RS01585 0.68 +0.7 339,421 + ABCV34_RS01585 0.70 -1.3 339,421 + ABCV34_RS01585 0.70 -1.3 339,421 + ABCV34_RS01585 0.70 -0.5 339,421 + ABCV34_RS01585 0.70 +1.0 339,421 + ABCV34_RS01585 0.70 +0.1
Or see this region's nucleotide sequence