Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16025

Experiment: K5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K5
1,976,324	+	nirC	HEPCGN_16015	0.43	+1.7
1,976,325	-	nirC	HEPCGN_16015	0.44	-0.9
1,976,377	+	nirC	HEPCGN_16015	0.50	+0.8
1,976,378	-	nirC	HEPCGN_16015	0.50	+1.3
1,976,382	-	nirC	HEPCGN_16015	0.51	-0.8
1,976,410	+	nirC	HEPCGN_16015	0.54	-0.2
1,976,411	-	nirC	HEPCGN_16015	0.54	-0.1
1,976,411	-	nirC	HEPCGN_16015	0.54	+0.1
1,976,411	-	nirC	HEPCGN_16015	0.54	-0.8
1,976,412	+	nirC	HEPCGN_16015	0.54	-0.3
1,976,413	-	nirC	HEPCGN_16015	0.55	-0.6
1,976,413	-	nirC	HEPCGN_16015	0.55	+1.0
1,976,613	-	nirC	HEPCGN_16015	0.79	+0.2
1,976,670	+	nirC	HEPCGN_16015	0.86	-0.6
1,976,671	-	nirC	HEPCGN_16015	0.86	+0.6
1,976,671	-	nirC	HEPCGN_16015	0.86	-1.1
1,976,764	+				-0.9
1,976,765	-				-0.8
1,976,799	+				-0.9
1,976,846	-				+0.2
1,977,149	-	nirD	HEPCGN_16020	0.75	+1.4
1,977,163	+	nirD	HEPCGN_16020	0.79	-0.4
1,977,374	+				-1.1
1,977,374	+				+0.5
1,977,525	-	nirB	HEPCGN_16025	0.12	+0.3
1,977,553	+	nirB	HEPCGN_16025	0.13	-1.0
1,977,553	+	nirB	HEPCGN_16025	0.13	+0.0
1,977,554	-	nirB	HEPCGN_16025	0.13	-0.1
1,977,554	-	nirB	HEPCGN_16025	0.13	-1.0
1,977,578	-	nirB	HEPCGN_16025	0.14	+3.0
1,977,578	-	nirB	HEPCGN_16025	0.14	+0.4
1,977,659	-	nirB	HEPCGN_16025	0.17	+0.1
1,977,659	-	nirB	HEPCGN_16025	0.17	-0.6
1,977,778	+	nirB	HEPCGN_16025	0.22	+0.4
1,977,864	-	nirB	HEPCGN_16025	0.25	+0.1
1,977,991	+	nirB	HEPCGN_16025	0.30	-0.6
1,978,013	+	nirB	HEPCGN_16025	0.31	-0.1
1,978,079	-	nirB	HEPCGN_16025	0.33	-0.6
1,978,257	-	nirB	HEPCGN_16025	0.40	+1.7
1,978,300	+	nirB	HEPCGN_16025	0.42	-0.0
1,978,301	-	nirB	HEPCGN_16025	0.42	-0.2
1,978,328	+	nirB	HEPCGN_16025	0.43	+0.1
1,978,328	+	nirB	HEPCGN_16025	0.43	-1.4
1,978,523	+	nirB	HEPCGN_16025	0.51	+0.1
1,978,535	+	nirB	HEPCGN_16025	0.51	+0.6
1,978,705	+	nirB	HEPCGN_16025	0.58	-0.4
1,978,705	+	nirB	HEPCGN_16025	0.58	-1.4
1,978,735	+	nirB	HEPCGN_16025	0.59	-1.0
1,978,735	+	nirB	HEPCGN_16025	0.59	+0.3
1,978,735	+	nirB	HEPCGN_16025	0.59	+1.5
1,978,736	-	nirB	HEPCGN_16025	0.59	+0.7
1,978,736	-	nirB	HEPCGN_16025	0.59	+0.2
1,978,739	+	nirB	HEPCGN_16025	0.59	-0.0
1,978,739	+	nirB	HEPCGN_16025	0.59	+0.2
1,978,739	+	nirB	HEPCGN_16025	0.59	+1.2
1,978,739	+	nirB	HEPCGN_16025	0.59	+0.5
1,978,740	-	nirB	HEPCGN_16025	0.59	+0.1
1,978,775	+	nirB	HEPCGN_16025	0.61	+1.2
1,978,776	-	nirB	HEPCGN_16025	0.61	+1.0
1,978,776	-	nirB	HEPCGN_16025	0.61	+0.1
1,978,776	-	nirB	HEPCGN_16025	0.61	+0.5
1,978,776	-	nirB	HEPCGN_16025	0.61	+0.6
1,978,782	+	nirB	HEPCGN_16025	0.61	+2.3
1,978,789	-	nirB	HEPCGN_16025	0.61	-1.5
1,978,789	-	nirB	HEPCGN_16025	0.61	+0.1
1,978,853	+	nirB	HEPCGN_16025	0.64	-0.0
1,978,853	+	nirB	HEPCGN_16025	0.64	-0.5
1,978,882	+	nirB	HEPCGN_16025	0.65	-1.9
1,978,894	-	nirB	HEPCGN_16025	0.65	+0.4
1,978,906	-	nirB	HEPCGN_16025	0.66	+0.1
1,978,942	+	nirB	HEPCGN_16025	0.67	-1.4
1,978,942	+	nirB	HEPCGN_16025	0.67	+0.2
1,978,946	+	nirB	HEPCGN_16025	0.68	+0.0
1,979,063	+	nirB	HEPCGN_16025	0.72	-0.5
1,979,063	+	nirB	HEPCGN_16025	0.72	+0.3
1,979,268	-	nirB	HEPCGN_16025	0.80	+0.9
1,979,268	-	nirB	HEPCGN_16025	0.80	+0.3
1,979,271	+	nirB	HEPCGN_16025	0.80	-0.9
1,979,304	+	nirB	HEPCGN_16025	0.82	-0.1
1,979,478	-	nirB	HEPCGN_16025	0.88	+0.2
1,979,566	+				-0.5
1,979,618	-				-1.1
1,979,632	-				-0.2
1,979,641	+				-0.2
1,979,641	+				+0.1
1,979,641	+				-1.0
1,979,675	+				+0.0
1,979,699	+				+0.4
1,979,717	+				+0.1
1,979,718	-				-0.1
1,979,792	+				-0.8
1,979,795	+				+1.1
1,979,836	+				-1.0
1,979,836	+				-1.1
1,979,973	+				+0.0
1,979,973	+				+1.1
1,979,974	-				-1.6
1,979,974	-				+0.5
1,979,974	-				+1.7
1,979,974	-				-1.1
1,979,974	-				-0.2
1,979,974	-				-0.4
1,979,977	+				+0.3
1,980,053	+				-0.2
1,980,053	+				-0.1
1,980,054	-				-0.4
1,980,113	-				-1.4
1,980,152	+	tsgA	HEPCGN_16030	0.10	-0.7
1,980,191	+	tsgA	HEPCGN_16030	0.13	+0.6
1,980,191	+	tsgA	HEPCGN_16030	0.13	+0.5
1,980,191	+	tsgA	HEPCGN_16030	0.13	-0.5
1,980,191	+	tsgA	HEPCGN_16030	0.13	+0.6
1,980,191	+	tsgA	HEPCGN_16030	0.13	-1.0
1,980,192	-	tsgA	HEPCGN_16030	0.13	-0.6
1,980,192	-	tsgA	HEPCGN_16030	0.13	+0.4
1,980,244	-	tsgA	HEPCGN_16030	0.18	-1.0
1,980,281	+	tsgA	HEPCGN_16030	0.21	+1.3
1,980,283	+	tsgA	HEPCGN_16030	0.21	+1.0
1,980,284	-	tsgA	HEPCGN_16030	0.21	-0.5
1,980,284	-	tsgA	HEPCGN_16030	0.21	-0.8
1,980,284	-	tsgA	HEPCGN_16030	0.21	-0.7
1,980,284	-	tsgA	HEPCGN_16030	0.21	+0.5
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.4
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.5
1,980,329	+	tsgA	HEPCGN_16030	0.25	+0.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	-0.0
1,980,329	+	tsgA	HEPCGN_16030	0.25	+1.3
1,980,329	+	tsgA	HEPCGN_16030	0.25	+0.8
1,980,330	-	tsgA	HEPCGN_16030	0.25	+0.0
1,980,330	-	tsgA	HEPCGN_16030	0.25	+1.4
1,980,358	+	tsgA	HEPCGN_16030	0.27	+0.7
1,980,398	+	tsgA	HEPCGN_16030	0.31	-1.3
1,980,426	-	tsgA	HEPCGN_16030	0.33	+0.3
1,980,454	+	tsgA	HEPCGN_16030	0.36	+2.0
1,980,454	+	tsgA	HEPCGN_16030	0.36	-0.6
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.1
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.1
1,980,455	-	tsgA	HEPCGN_16030	0.36	-0.1
1,980,455	-	tsgA	HEPCGN_16030	0.36	-1.8
1,980,470	+	tsgA	HEPCGN_16030	0.37	+0.5
1,980,471	-	tsgA	HEPCGN_16030	0.37	-0.0
1,980,562	+	tsgA	HEPCGN_16030	0.45	-0.2
1,980,562	+	tsgA	HEPCGN_16030	0.45	-0.4
1,980,563	-	tsgA	HEPCGN_16030	0.45	-1.2
1,980,563	-	tsgA	HEPCGN_16030	0.45	-1.1
1,980,563	-	tsgA	HEPCGN_16030	0.45	-0.2
1,980,683	+	tsgA	HEPCGN_16030	0.55	-0.1
1,980,697	+	tsgA	HEPCGN_16030	0.56	-2.2
1,980,698	-	tsgA	HEPCGN_16030	0.56	+0.3
1,980,698	-	tsgA	HEPCGN_16030	0.56	+0.1
1,980,719	-	tsgA	HEPCGN_16030	0.58	+1.2