Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zraP and yjaH are separated by 1 nucleotides yjaH and hupA are separated by 72 nucleotides hupA and yjaG are separated by 186 nucleotides yjaG and nfi are separated by 42 nucleotides
HEPCGN_11970: zraP - zinc resistance sensor/chaperone ZraP, at 1,135,952 to 1,136,371
zraP
HEPCGN_11975: yjaH - Uncharacterized protein YjaH, at 1,136,373 to 1,137,008
yjaH
HEPCGN_11980: hupA - DNA-binding protein HU-alpha, at 1,137,081 to 1,137,353
hupA
HEPCGN_11985: yjaG - Uncharacterized protein YjaG, at 1,137,540 to 1,138,130
yjaG
HEPCGN_11990: nfi - deoxyribonuclease V, at 1,138,173 to 1,138,844
nfi
Position (kb) 1137
1138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1136.163 kb on - strand, within zraP at 1136.168 kb on + strand, within zraP at 1136.168 kb on + strand, within zraP at 1136.168 kb on + strand, within zraP at 1136.168 kb on + strand, within zraP at 1136.169 kb on - strand, within zraP at 1136.169 kb on - strand, within zraP at 1136.212 kb on + strand, within zraP at 1136.279 kb on - strand, within zraP at 1136.279 kb on - strand, within zraP at 1136.430 kb on + strand at 1136.430 kb on + strand at 1136.431 kb on - strand at 1136.527 kb on - strand, within yjaH at 1136.662 kb on + strand, within yjaH at 1136.665 kb on - strand, within yjaH at 1136.681 kb on + strand, within yjaH at 1136.779 kb on + strand, within yjaH at 1136.780 kb on - strand, within yjaH at 1136.840 kb on + strand, within yjaH at 1137.086 kb on + strand at 1137.087 kb on - strand at 1137.131 kb on + strand, within hupA at 1137.131 kb on + strand, within hupA at 1137.229 kb on - strand, within hupA at 1137.257 kb on + strand, within hupA at 1137.327 kb on + strand at 1137.328 kb on - strand at 1137.328 kb on - strand at 1137.353 kb on + strand at 1137.364 kb on + strand at 1137.365 kb on - strand at 1137.385 kb on + strand at 1137.386 kb on - strand at 1137.386 kb on - strand at 1137.415 kb on + strand at 1137.430 kb on + strand at 1137.430 kb on + strand at 1137.431 kb on - strand at 1137.504 kb on + strand at 1137.504 kb on + strand at 1137.522 kb on - strand at 1137.542 kb on - strand at 1137.640 kb on - strand, within yjaG at 1137.651 kb on + strand, within yjaG at 1137.681 kb on + strand, within yjaG at 1137.832 kb on - strand, within yjaG at 1137.933 kb on + strand, within yjaG at 1138.033 kb on + strand, within yjaG at 1138.034 kb on - strand, within yjaG at 1138.037 kb on + strand, within yjaG at 1138.037 kb on + strand, within yjaG at 1138.043 kb on - strand, within yjaG at 1138.043 kb on - strand, within yjaG at 1138.174 kb on + strand at 1138.190 kb on + strand at 1138.191 kb on - strand at 1138.338 kb on - strand, within nfi
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 1,136,163 - zraP HEPCGN_11970 0.50 -0.3 1,136,168 + zraP HEPCGN_11970 0.51 +0.3 1,136,168 + zraP HEPCGN_11970 0.51 +0.1 1,136,168 + zraP HEPCGN_11970 0.51 -2.0 1,136,168 + zraP HEPCGN_11970 0.51 -1.5 1,136,169 - zraP HEPCGN_11970 0.52 -0.4 1,136,169 - zraP HEPCGN_11970 0.52 -0.0 1,136,212 + zraP HEPCGN_11970 0.62 +0.1 1,136,279 - zraP HEPCGN_11970 0.78 +1.2 1,136,279 - zraP HEPCGN_11970 0.78 +0.0 1,136,430 + +0.7 1,136,430 + -0.5 1,136,431 - +0.1 1,136,527 - yjaH HEPCGN_11975 0.24 -0.7 1,136,662 + yjaH HEPCGN_11975 0.45 +0.3 1,136,665 - yjaH HEPCGN_11975 0.46 -0.1 1,136,681 + yjaH HEPCGN_11975 0.48 +0.3 1,136,779 + yjaH HEPCGN_11975 0.64 +0.8 1,136,780 - yjaH HEPCGN_11975 0.64 -0.3 1,136,840 + yjaH HEPCGN_11975 0.73 -0.6 1,137,086 + +0.9 1,137,087 - -0.5 1,137,131 + hupA HEPCGN_11980 0.18 -1.8 1,137,131 + hupA HEPCGN_11980 0.18 +0.2 1,137,229 - hupA HEPCGN_11980 0.54 -1.9 1,137,257 + hupA HEPCGN_11980 0.64 -0.5 1,137,327 + +0.6 1,137,328 - -0.0 1,137,328 - -0.3 1,137,353 + -0.8 1,137,364 + +0.5 1,137,365 - +0.6 1,137,385 + +0.9 1,137,386 - -0.1 1,137,386 - -0.2 1,137,415 + +2.1 1,137,430 + +0.2 1,137,430 + +0.1 1,137,431 - +0.8 1,137,504 + +0.2 1,137,504 + +0.9 1,137,522 - +1.5 1,137,542 - -0.2 1,137,640 - yjaG HEPCGN_11985 0.17 -0.3 1,137,651 + yjaG HEPCGN_11985 0.19 +0.3 1,137,681 + yjaG HEPCGN_11985 0.24 -0.3 1,137,832 - yjaG HEPCGN_11985 0.49 +1.8 1,137,933 + yjaG HEPCGN_11985 0.66 +0.4 1,138,033 + yjaG HEPCGN_11985 0.83 -0.7 1,138,034 - yjaG HEPCGN_11985 0.84 +1.1 1,138,037 + yjaG HEPCGN_11985 0.84 +0.1 1,138,037 + yjaG HEPCGN_11985 0.84 -0.1 1,138,043 - yjaG HEPCGN_11985 0.85 +0.1 1,138,043 - yjaG HEPCGN_11985 0.85 -0.4 1,138,174 + +0.6 1,138,190 + +0.8 1,138,191 - +0.3 1,138,338 - nfi HEPCGN_11990 0.25 -0.5
Or see this region's nucleotide sequence