Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt surA and pdxA overlap by 1 nucleotides pdxA and rsmA overlap by 4 nucleotides rsmA and apaG are separated by 2 nucleotides apaG and apaH are separated by 6 nucleotides
HEPCGN_08815: surA - peptidylprolyl isomerase SurA, at 507,714 to 509,000
surA
HEPCGN_08820: pdxA - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 509,000 to 509,989
pdxA
HEPCGN_08825: rsmA - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA, at 509,986 to 510,807
rsmA
HEPCGN_08830: apaG - Co2+/Mg2+ efflux protein ApaG, at 510,810 to 511,187
apaG
HEPCGN_08835: apaH - bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH, at 511,194 to 512,042
apaH
Position (kb) 509
510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 509.005 kb on + strand at 509.062 kb on - strand at 509.285 kb on + strand, within pdxA at 509.286 kb on - strand, within pdxA at 509.286 kb on - strand, within pdxA at 509.366 kb on - strand, within pdxA at 509.524 kb on + strand, within pdxA at 509.651 kb on - strand, within pdxA at 509.651 kb on - strand, within pdxA at 509.667 kb on + strand, within pdxA at 509.760 kb on - strand, within pdxA at 509.818 kb on - strand, within pdxA at 509.942 kb on - strand at 509.977 kb on + strand at 510.014 kb on + strand at 510.332 kb on - strand, within rsmA at 510.333 kb on + strand, within rsmA at 510.333 kb on + strand, within rsmA at 510.333 kb on + strand, within rsmA at 510.333 kb on + strand, within rsmA at 510.334 kb on - strand, within rsmA at 510.334 kb on - strand, within rsmA at 510.367 kb on - strand, within rsmA at 510.371 kb on - strand, within rsmA at 510.371 kb on - strand, within rsmA at 510.399 kb on + strand, within rsmA at 510.399 kb on + strand, within rsmA at 510.454 kb on + strand, within rsmA at 510.481 kb on + strand, within rsmA at 510.663 kb on + strand, within rsmA at 510.773 kb on - strand at 510.853 kb on - strand, within apaG at 510.901 kb on - strand, within apaG at 510.913 kb on + strand, within apaG at 511.028 kb on + strand, within apaG at 511.053 kb on + strand, within apaG at 511.185 kb on + strand at 511.203 kb on + strand at 511.203 kb on + strand at 511.203 kb on + strand at 511.204 kb on - strand at 511.204 kb on - strand at 511.204 kb on - strand at 511.208 kb on + strand at 511.230 kb on + strand at 511.231 kb on - strand at 511.256 kb on + strand at 511.261 kb on + strand at 511.269 kb on - strand at 511.283 kb on + strand, within apaH at 511.369 kb on + strand, within apaH at 511.370 kb on - strand, within apaH at 511.370 kb on - strand, within apaH at 511.434 kb on - strand, within apaH at 511.491 kb on - strand, within apaH at 511.609 kb on + strand, within apaH at 511.610 kb on - strand, within apaH at 511.610 kb on - strand, within apaH at 511.635 kb on + strand, within apaH at 511.659 kb on + strand, within apaH at 511.660 kb on - strand, within apaH at 511.772 kb on + strand, within apaH at 511.776 kb on + strand, within apaH at 511.776 kb on + strand, within apaH
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 509,005 + -1.0 509,062 - -0.1 509,285 + pdxA HEPCGN_08820 0.29 -0.5 509,286 - pdxA HEPCGN_08820 0.29 -0.6 509,286 - pdxA HEPCGN_08820 0.29 +0.3 509,366 - pdxA HEPCGN_08820 0.37 -0.4 509,524 + pdxA HEPCGN_08820 0.53 -0.0 509,651 - pdxA HEPCGN_08820 0.66 +0.2 509,651 - pdxA HEPCGN_08820 0.66 -0.2 509,667 + pdxA HEPCGN_08820 0.67 -0.3 509,760 - pdxA HEPCGN_08820 0.77 -0.3 509,818 - pdxA HEPCGN_08820 0.83 -0.9 509,942 - -0.4 509,977 + +0.2 510,014 + -2.0 510,332 - rsmA HEPCGN_08825 0.42 -0.8 510,333 + rsmA HEPCGN_08825 0.42 -2.1 510,333 + rsmA HEPCGN_08825 0.42 -0.6 510,333 + rsmA HEPCGN_08825 0.42 -0.0 510,333 + rsmA HEPCGN_08825 0.42 +2.5 510,334 - rsmA HEPCGN_08825 0.42 +0.3 510,334 - rsmA HEPCGN_08825 0.42 -0.3 510,367 - rsmA HEPCGN_08825 0.46 -0.8 510,371 - rsmA HEPCGN_08825 0.47 -0.5 510,371 - rsmA HEPCGN_08825 0.47 -1.3 510,399 + rsmA HEPCGN_08825 0.50 -1.1 510,399 + rsmA HEPCGN_08825 0.50 +0.0 510,454 + rsmA HEPCGN_08825 0.57 -2.3 510,481 + rsmA HEPCGN_08825 0.60 +0.0 510,663 + rsmA HEPCGN_08825 0.82 -0.7 510,773 - -1.0 510,853 - apaG HEPCGN_08830 0.11 +0.8 510,901 - apaG HEPCGN_08830 0.24 +0.2 510,913 + apaG HEPCGN_08830 0.27 -0.7 511,028 + apaG HEPCGN_08830 0.58 -0.6 511,053 + apaG HEPCGN_08830 0.64 +0.2 511,185 + -0.1 511,203 + -2.5 511,203 + -0.0 511,203 + -1.9 511,204 - -0.1 511,204 - -2.0 511,204 - -3.0 511,208 + -3.1 511,230 + -0.1 511,231 - -0.1 511,256 + -3.2 511,261 + -1.9 511,269 - +0.8 511,283 + apaH HEPCGN_08835 0.10 -1.9 511,369 + apaH HEPCGN_08835 0.21 -1.9 511,370 - apaH HEPCGN_08835 0.21 -2.2 511,370 - apaH HEPCGN_08835 0.21 -0.8 511,434 - apaH HEPCGN_08835 0.28 -1.8 511,491 - apaH HEPCGN_08835 0.35 -0.7 511,609 + apaH HEPCGN_08835 0.49 +0.1 511,610 - apaH HEPCGN_08835 0.49 -1.2 511,610 - apaH HEPCGN_08835 0.49 -2.5 511,635 + apaH HEPCGN_08835 0.52 -2.3 511,659 + apaH HEPCGN_08835 0.55 -0.6 511,660 - apaH HEPCGN_08835 0.55 -0.7 511,772 + apaH HEPCGN_08835 0.68 +0.3 511,776 + apaH HEPCGN_08835 0.69 +0.1 511,776 + apaH HEPCGN_08835 0.69 -2.0
Or see this region's nucleotide sequence