Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_07090 and HEPCGN_07095 overlap by 16 nucleotides HEPCGN_07095 and HEPCGN_07100 are separated by 152 nucleotides HEPCGN_07100 and HEPCGN_07105 are separated by 677 nucleotides
HEPCGN_07090: HEPCGN_07090 - hypothetical protein, at 152,535 to 152,723
_07090
HEPCGN_07095: HEPCGN_07095 - RNA-guided endonuclease TnpB family protein, at 152,708 to 153,514
_07095
HEPCGN_07100: HEPCGN_07100 - Putative virulence protein, at 153,667 to 153,855
_07100
HEPCGN_07105: HEPCGN_07105 - DUF3251 domain-containing protein, at 154,533 to 154,820
_07105
Position (kb) 153
154 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 152.843 kb on - strand, within HEPCGN_07095 at 152.852 kb on + strand, within HEPCGN_07095 at 152.852 kb on + strand, within HEPCGN_07095 at 152.932 kb on - strand, within HEPCGN_07095 at 152.932 kb on - strand, within HEPCGN_07095 at 153.774 kb on + strand, within HEPCGN_07100 at 154.370 kb on + strand at 154.399 kb on - strand at 154.474 kb on - strand at 154.524 kb on - strand at 154.528 kb on + strand at 154.528 kb on + strand at 154.529 kb on - strand at 154.529 kb on - strand at 154.532 kb on + strand at 154.533 kb on - strand at 154.548 kb on - strand at 154.559 kb on + strand at 154.582 kb on + strand, within HEPCGN_07105 at 154.582 kb on + strand, within HEPCGN_07105 at 154.660 kb on + strand, within HEPCGN_07105 at 154.753 kb on + strand, within HEPCGN_07105 at 154.754 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 152,843 - HEPCGN_07095 0.17 -0.3 152,852 + HEPCGN_07095 0.18 +0.2 152,852 + HEPCGN_07095 0.18 -0.9 152,932 - HEPCGN_07095 0.28 +0.2 152,932 - HEPCGN_07095 0.28 -0.1 153,774 + HEPCGN_07100 0.57 -0.5 154,370 + +0.6 154,399 - -0.4 154,474 - -1.8 154,524 - +0.7 154,528 + -1.6 154,528 + +2.8 154,529 - -0.1 154,529 - +0.1 154,532 + -1.0 154,533 - -1.2 154,548 - +0.6 154,559 + +1.2 154,582 + HEPCGN_07105 0.17 -0.3 154,582 + HEPCGN_07105 0.17 -0.8 154,660 + HEPCGN_07105 0.44 +0.2 154,753 + HEPCGN_07105 0.76 +0.2 154,754 - HEPCGN_07105 0.77 -0.2 154,787 - HEPCGN_07105 0.88 -0.7 154,787 - HEPCGN_07105 0.88 +0.0
Or see this region's nucleotide sequence