Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepA and modD are separated by 25 nucleotides modD and HEPCGN_24830 overlap by 4 nucleotides HEPCGN_24830 and fepC are separated by 9 nucleotides fepC and fepD overlap by 4 nucleotides
HEPCGN_24820: fepA - TonB-dependent receptor, at 3,716,425 to 3,718,395
fepA
HEPCGN_24825: modD - Putative pyrophosphorylase ModD, at 3,718,421 to 3,719,275
modD
HEPCGN_24830: HEPCGN_24830 - SAM-dependent methyltransferase, at 3,719,272 to 3,720,084
_24830
HEPCGN_24835: fepC - ABC transporter ATP-binding protein, at 3,720,094 to 3,720,852
fepC
HEPCGN_24840: fepD - iron ABC transporter permease, at 3,720,849 to 3,721,829
fepD
Position (kb) 3719
3720
3721 Strain fitness (log2 ratio) -2
-1
0
1 at 3718.360 kb on + strand at 3718.395 kb on + strand at 3718.396 kb on - strand at 3718.473 kb on + strand at 3718.476 kb on + strand at 3718.492 kb on + strand at 3718.519 kb on - strand, within modD at 3718.589 kb on + strand, within modD at 3718.589 kb on + strand, within modD at 3718.590 kb on - strand, within modD at 3718.701 kb on - strand, within modD at 3718.928 kb on + strand, within modD at 3718.929 kb on - strand, within modD at 3718.929 kb on - strand, within modD at 3718.950 kb on + strand, within modD at 3719.168 kb on + strand, within modD at 3719.170 kb on + strand, within modD at 3719.170 kb on + strand, within modD at 3719.171 kb on - strand, within modD at 3719.171 kb on - strand, within modD at 3719.171 kb on - strand, within modD at 3719.171 kb on - strand, within modD at 3719.172 kb on + strand, within modD at 3719.172 kb on + strand, within modD at 3719.173 kb on - strand, within modD at 3719.195 kb on + strand at 3719.240 kb on + strand at 3719.372 kb on + strand, within HEPCGN_24830 at 3719.374 kb on + strand, within HEPCGN_24830 at 3719.375 kb on - strand, within HEPCGN_24830 at 3719.534 kb on + strand, within HEPCGN_24830 at 3719.617 kb on - strand, within HEPCGN_24830 at 3719.819 kb on + strand, within HEPCGN_24830 at 3720.069 kb on + strand at 3720.320 kb on - strand, within fepC at 3720.370 kb on + strand, within fepC at 3720.370 kb on + strand, within fepC at 3720.577 kb on - strand, within fepC at 3720.697 kb on - strand, within fepC at 3720.796 kb on + strand at 3720.796 kb on + strand at 3720.956 kb on + strand, within fepD at 3721.074 kb on + strand, within fepD at 3721.075 kb on - strand, within fepD at 3721.083 kb on + strand, within fepD
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 3,718,360 + +0.9 3,718,395 + +0.1 3,718,396 - +0.9 3,718,473 + -1.0 3,718,476 + +0.4 3,718,492 + +1.0 3,718,519 - modD HEPCGN_24825 0.11 -1.0 3,718,589 + modD HEPCGN_24825 0.20 +1.1 3,718,589 + modD HEPCGN_24825 0.20 +0.3 3,718,590 - modD HEPCGN_24825 0.20 +1.2 3,718,701 - modD HEPCGN_24825 0.33 +1.2 3,718,928 + modD HEPCGN_24825 0.59 +0.8 3,718,929 - modD HEPCGN_24825 0.59 -0.6 3,718,929 - modD HEPCGN_24825 0.59 -0.7 3,718,950 + modD HEPCGN_24825 0.62 +1.1 3,719,168 + modD HEPCGN_24825 0.87 +0.5 3,719,170 + modD HEPCGN_24825 0.88 +0.8 3,719,170 + modD HEPCGN_24825 0.88 -0.1 3,719,171 - modD HEPCGN_24825 0.88 -0.4 3,719,171 - modD HEPCGN_24825 0.88 +1.0 3,719,171 - modD HEPCGN_24825 0.88 -0.9 3,719,171 - modD HEPCGN_24825 0.88 -0.7 3,719,172 + modD HEPCGN_24825 0.88 -0.2 3,719,172 + modD HEPCGN_24825 0.88 -2.0 3,719,173 - modD HEPCGN_24825 0.88 +0.3 3,719,195 + -1.3 3,719,240 + -1.2 3,719,372 + HEPCGN_24830 0.12 +0.3 3,719,374 + HEPCGN_24830 0.13 -0.8 3,719,375 - HEPCGN_24830 0.13 -1.7 3,719,534 + HEPCGN_24830 0.32 -0.8 3,719,617 - HEPCGN_24830 0.42 -0.2 3,719,819 + HEPCGN_24830 0.67 -1.0 3,720,069 + +1.6 3,720,320 - fepC HEPCGN_24835 0.30 +0.1 3,720,370 + fepC HEPCGN_24835 0.36 -0.3 3,720,370 + fepC HEPCGN_24835 0.36 -0.2 3,720,577 - fepC HEPCGN_24835 0.64 -0.6 3,720,697 - fepC HEPCGN_24835 0.79 -1.3 3,720,796 + -0.2 3,720,796 + +0.4 3,720,956 + fepD HEPCGN_24840 0.11 +0.9 3,721,074 + fepD HEPCGN_24840 0.23 +0.4 3,721,075 - fepD HEPCGN_24840 0.23 -0.2 3,721,083 + fepD HEPCGN_24840 0.24 -0.4
Or see this region's nucleotide sequence