Experiment: TP15
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ymfN and HEPCGN_03795 overlap by 4 nucleotides HEPCGN_03795 and HEPCGN_03800 overlap by 11 nucleotides
HEPCGN_03790: ymfN - terminase, at 665,624 to 667,381
ymfN
HEPCGN_03795: HEPCGN_03795 - hypothetical protein, at 667,378 to 667,539
_03795
HEPCGN_03800: HEPCGN_03800 - phage portal protein, at 667,529 to 668,755
_03800
Position (kb) 667
668 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 666.388 kb on + strand, within ymfN at 666.446 kb on + strand, within ymfN at 666.446 kb on + strand, within ymfN at 666.486 kb on - strand, within ymfN at 666.700 kb on + strand, within ymfN at 666.700 kb on + strand, within ymfN at 666.701 kb on - strand, within ymfN at 666.701 kb on - strand, within ymfN at 666.701 kb on - strand, within ymfN at 666.701 kb on - strand, within ymfN at 666.719 kb on + strand, within ymfN at 666.781 kb on + strand, within ymfN at 666.790 kb on + strand, within ymfN at 666.928 kb on + strand, within ymfN at 666.972 kb on + strand, within ymfN at 667.207 kb on + strand at 667.291 kb on + strand at 667.389 kb on + strand at 667.393 kb on - strand at 667.441 kb on + strand, within HEPCGN_03795 at 667.448 kb on - strand, within HEPCGN_03795 at 667.498 kb on + strand, within HEPCGN_03795 at 667.613 kb on - strand at 667.632 kb on - strand at 667.632 kb on - strand at 667.632 kb on - strand at 667.670 kb on + strand, within HEPCGN_03800 at 667.679 kb on - strand, within HEPCGN_03800 at 667.683 kb on - strand, within HEPCGN_03800 at 667.816 kb on + strand, within HEPCGN_03800 at 667.817 kb on - strand, within HEPCGN_03800 at 667.817 kb on - strand, within HEPCGN_03800 at 667.865 kb on + strand, within HEPCGN_03800 at 667.865 kb on + strand, within HEPCGN_03800 at 667.865 kb on + strand, within HEPCGN_03800 at 667.865 kb on + strand, within HEPCGN_03800 at 667.867 kb on + strand, within HEPCGN_03800 at 667.867 kb on + strand, within HEPCGN_03800 at 667.868 kb on - strand, within HEPCGN_03800 at 667.868 kb on - strand, within HEPCGN_03800 at 667.918 kb on + strand, within HEPCGN_03800 at 667.960 kb on + strand, within HEPCGN_03800 at 667.965 kb on - strand, within HEPCGN_03800 at 668.113 kb on + strand, within HEPCGN_03800 at 668.113 kb on + strand, within HEPCGN_03800 at 668.114 kb on - strand, within HEPCGN_03800 at 668.114 kb on - strand, within HEPCGN_03800 at 668.156 kb on - strand, within HEPCGN_03800 at 668.206 kb on + strand, within HEPCGN_03800 at 668.207 kb on - strand, within HEPCGN_03800 at 668.323 kb on + strand, within HEPCGN_03800 at 668.362 kb on + strand, within HEPCGN_03800 at 668.363 kb on - strand, within HEPCGN_03800 at 668.414 kb on - strand, within HEPCGN_03800 at 668.416 kb on + strand, within HEPCGN_03800 at 668.528 kb on + strand, within HEPCGN_03800 at 668.528 kb on + strand, within HEPCGN_03800 at 668.528 kb on + strand, within HEPCGN_03800 at 668.529 kb on - strand, within HEPCGN_03800 at 668.529 kb on - strand, within HEPCGN_03800
Per-strain Table
Position Strand Gene LocusTag Fraction TP15 remove 666,388 + ymfN HEPCGN_03790 0.43 -0.5 666,446 + ymfN HEPCGN_03790 0.47 -0.2 666,446 + ymfN HEPCGN_03790 0.47 +1.2 666,486 - ymfN HEPCGN_03790 0.49 +0.1 666,700 + ymfN HEPCGN_03790 0.61 -0.5 666,700 + ymfN HEPCGN_03790 0.61 +0.3 666,701 - ymfN HEPCGN_03790 0.61 +0.8 666,701 - ymfN HEPCGN_03790 0.61 +0.1 666,701 - ymfN HEPCGN_03790 0.61 +0.0 666,701 - ymfN HEPCGN_03790 0.61 -0.3 666,719 + ymfN HEPCGN_03790 0.62 -1.0 666,781 + ymfN HEPCGN_03790 0.66 +0.9 666,790 + ymfN HEPCGN_03790 0.66 +0.1 666,928 + ymfN HEPCGN_03790 0.74 +0.9 666,972 + ymfN HEPCGN_03790 0.77 +0.8 667,207 + -0.1 667,291 + +1.0 667,389 + +0.9 667,393 - -0.9 667,441 + HEPCGN_03795 0.39 +0.6 667,448 - HEPCGN_03795 0.43 -1.5 667,498 + HEPCGN_03795 0.74 -3.0 667,613 - -2.1 667,632 - +2.7 667,632 - -0.5 667,632 - -0.0 667,670 + HEPCGN_03800 0.11 +0.2 667,679 - HEPCGN_03800 0.12 -0.2 667,683 - HEPCGN_03800 0.13 -0.9 667,816 + HEPCGN_03800 0.23 +0.6 667,817 - HEPCGN_03800 0.23 +0.6 667,817 - HEPCGN_03800 0.23 +0.2 667,865 + HEPCGN_03800 0.27 -1.4 667,865 + HEPCGN_03800 0.27 -2.2 667,865 + HEPCGN_03800 0.27 -1.0 667,865 + HEPCGN_03800 0.27 +0.2 667,867 + HEPCGN_03800 0.28 -1.2 667,867 + HEPCGN_03800 0.28 -0.2 667,868 - HEPCGN_03800 0.28 -0.0 667,868 - HEPCGN_03800 0.28 -1.3 667,918 + HEPCGN_03800 0.32 -0.9 667,960 + HEPCGN_03800 0.35 -0.5 667,965 - HEPCGN_03800 0.36 -0.6 668,113 + HEPCGN_03800 0.48 -0.3 668,113 + HEPCGN_03800 0.48 -0.0 668,114 - HEPCGN_03800 0.48 +0.1 668,114 - HEPCGN_03800 0.48 +1.1 668,156 - HEPCGN_03800 0.51 -0.6 668,206 + HEPCGN_03800 0.55 -2.1 668,207 - HEPCGN_03800 0.55 -0.6 668,323 + HEPCGN_03800 0.65 -0.1 668,362 + HEPCGN_03800 0.68 +0.3 668,363 - HEPCGN_03800 0.68 +0.6 668,414 - HEPCGN_03800 0.72 -1.0 668,416 + HEPCGN_03800 0.72 -2.2 668,528 + HEPCGN_03800 0.81 +0.3 668,528 + HEPCGN_03800 0.81 -1.2 668,528 + HEPCGN_03800 0.81 -0.6 668,529 - HEPCGN_03800 0.81 -0.1 668,529 - HEPCGN_03800 0.81 -1.3
Or see this region's nucleotide sequence