Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnQ and glnP overlap by 4 nucleotides glnP and glnH are separated by 138 nucleotides glnH and dps are separated by 403 nucleotides
HEPCGN_01820: glnQ - glutamine ABC transporter ATP-binding protein GlnQ, at 289,269 to 289,991
glnQ
HEPCGN_01825: glnP - glutamine ABC transporter permease GlnP, at 289,988 to 290,647
glnP
HEPCGN_01830: glnH - glutamine ABC transporter substrate-binding protein GlnH, at 290,786 to 291,532
glnH
HEPCGN_01835: dps - DNA starvation/stationary phase protection protein Dps, at 291,936 to 292,439
dps
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 290.153 kb on - strand, within glnP at 290.209 kb on + strand, within glnP at 290.210 kb on - strand, within glnP at 290.302 kb on + strand, within glnP at 290.424 kb on + strand, within glnP at 290.428 kb on + strand, within glnP at 290.449 kb on + strand, within glnP at 290.450 kb on - strand, within glnP at 290.450 kb on - strand, within glnP at 290.647 kb on + strand at 290.647 kb on + strand at 290.647 kb on + strand at 290.648 kb on - strand at 290.672 kb on - strand at 290.690 kb on + strand at 290.695 kb on - strand at 290.728 kb on + strand at 290.770 kb on + strand at 290.830 kb on - strand at 290.908 kb on + strand, within glnH at 290.914 kb on - strand, within glnH at 290.980 kb on - strand, within glnH at 291.038 kb on - strand, within glnH at 291.040 kb on - strand, within glnH at 291.077 kb on - strand, within glnH at 291.172 kb on + strand, within glnH at 291.397 kb on - strand, within glnH at 291.397 kb on - strand, within glnH at 291.397 kb on - strand, within glnH at 291.397 kb on - strand, within glnH at 291.452 kb on + strand, within glnH at 291.453 kb on - strand, within glnH at 291.519 kb on - strand at 291.532 kb on + strand at 291.533 kb on - strand at 291.584 kb on - strand at 291.657 kb on + strand at 291.768 kb on - strand at 291.823 kb on + strand at 291.840 kb on - strand at 291.844 kb on - strand at 291.844 kb on - strand at 292.002 kb on - strand, within dps at 292.044 kb on + strand, within dps at 292.045 kb on - strand, within dps at 292.045 kb on - strand, within dps at 292.149 kb on - strand, within dps at 292.255 kb on - strand, within dps at 292.350 kb on + strand, within dps at 292.350 kb on + strand, within dps at 292.393 kb on + strand at 292.461 kb on + strand at 292.462 kb on - strand at 292.462 kb on - strand at 292.462 kb on - strand at 292.489 kb on - strand at 292.489 kb on - strand at 292.500 kb on + strand at 292.500 kb on + strand at 292.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 290,153 - glnP HEPCGN_01825 0.25 +1.0 290,209 + glnP HEPCGN_01825 0.33 +0.6 290,210 - glnP HEPCGN_01825 0.34 -0.2 290,302 + glnP HEPCGN_01825 0.48 -0.5 290,424 + glnP HEPCGN_01825 0.66 -0.3 290,428 + glnP HEPCGN_01825 0.67 +0.3 290,449 + glnP HEPCGN_01825 0.70 +0.6 290,450 - glnP HEPCGN_01825 0.70 +0.0 290,450 - glnP HEPCGN_01825 0.70 -0.6 290,647 + +0.9 290,647 + -1.2 290,647 + -0.0 290,648 - +1.2 290,672 - -1.1 290,690 + +1.0 290,695 - +0.3 290,728 + +1.3 290,770 + -0.2 290,830 - -1.1 290,908 + glnH HEPCGN_01830 0.16 -0.3 290,914 - glnH HEPCGN_01830 0.17 -1.1 290,980 - glnH HEPCGN_01830 0.26 +0.2 291,038 - glnH HEPCGN_01830 0.34 +0.4 291,040 - glnH HEPCGN_01830 0.34 -0.3 291,077 - glnH HEPCGN_01830 0.39 -0.7 291,172 + glnH HEPCGN_01830 0.52 +0.3 291,397 - glnH HEPCGN_01830 0.82 +0.5 291,397 - glnH HEPCGN_01830 0.82 -0.2 291,397 - glnH HEPCGN_01830 0.82 -0.9 291,397 - glnH HEPCGN_01830 0.82 +0.7 291,452 + glnH HEPCGN_01830 0.89 -1.2 291,453 - glnH HEPCGN_01830 0.89 -0.7 291,519 - -0.1 291,532 + -0.0 291,533 - +0.2 291,584 - -0.6 291,657 + -1.0 291,768 - +0.5 291,823 + +1.4 291,840 - -0.5 291,844 - +2.4 291,844 - -0.2 292,002 - dps HEPCGN_01835 0.13 -0.3 292,044 + dps HEPCGN_01835 0.21 -0.9 292,045 - dps HEPCGN_01835 0.22 -0.0 292,045 - dps HEPCGN_01835 0.22 -2.4 292,149 - dps HEPCGN_01835 0.42 +0.5 292,255 - dps HEPCGN_01835 0.63 +0.1 292,350 + dps HEPCGN_01835 0.82 +0.2 292,350 + dps HEPCGN_01835 0.82 -1.1 292,393 + -0.7 292,461 + -0.5 292,462 - +0.5 292,462 - -0.4 292,462 - -0.3 292,489 - +0.7 292,489 - +0.6 292,500 + -0.3 292,500 + +0.0 292,501 - +0.4
Or see this region's nucleotide sequence