Experiment: Bas05
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lpoA and yraN overlap by 43 nucleotides yraN and diaA are separated by 19 nucleotides diaA and diaA are separated by 9 nucleotides
BNILDI_01500: lpoA - penicillin-binding protein activator LpoA, at 296,517 to 298,553
lpoA
BNILDI_01505: yraN - YraN family protein, at 298,511 to 298,906
yraN
BNILDI_01510: diaA - DnaA initiator-associating protein DiaA, at 298,926 to 299,516
diaA
BNILDI_01515: diaA - DnaA initiator-associating protein DiaA, at 299,526 to 300,101
diaA
Position (kb) 298
299 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 297.603 kb on - strand, within lpoA at 297.631 kb on + strand, within lpoA at 297.632 kb on - strand, within lpoA at 297.632 kb on - strand, within lpoA at 297.704 kb on + strand, within lpoA at 297.705 kb on - strand, within lpoA at 297.770 kb on + strand, within lpoA at 297.770 kb on + strand, within lpoA at 297.777 kb on + strand, within lpoA at 297.824 kb on + strand, within lpoA at 297.839 kb on + strand, within lpoA at 297.970 kb on + strand, within lpoA at 297.984 kb on - strand, within lpoA at 298.131 kb on + strand, within lpoA at 298.132 kb on - strand, within lpoA at 298.132 kb on - strand, within lpoA at 298.215 kb on + strand, within lpoA at 298.377 kb on + strand at 298.537 kb on + strand at 298.537 kb on + strand at 298.538 kb on - strand at 298.704 kb on + strand, within yraN at 298.704 kb on + strand, within yraN at 298.704 kb on + strand, within yraN at 298.705 kb on - strand, within yraN at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.904 kb on + strand at 298.905 kb on - strand at 298.908 kb on + strand at 298.908 kb on + strand at 299.165 kb on + strand, within diaA at 299.165 kb on + strand, within diaA at 299.171 kb on + strand, within diaA at 299.172 kb on - strand, within diaA at 299.206 kb on + strand, within diaA at 299.207 kb on - strand, within diaA at 299.260 kb on + strand, within diaA at 299.260 kb on + strand, within diaA at 299.260 kb on + strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.261 kb on - strand, within diaA at 299.302 kb on + strand, within diaA at 299.302 kb on + strand, within diaA at 299.339 kb on + strand, within diaA at 299.427 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.451 kb on - strand, within diaA at 299.523 kb on + strand at 299.524 kb on - strand at 299.524 kb on - strand at 299.524 kb on - strand at 299.555 kb on + strand at 299.555 kb on + strand at 299.556 kb on - strand at 299.740 kb on + strand, within diaA at 299.828 kb on - strand, within diaA at 299.847 kb on + strand, within diaA at 299.848 kb on - strand, within diaA at 299.894 kb on + strand, within diaA at 299.894 kb on + strand, within diaA at 299.901 kb on - strand, within diaA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas05 remove 297,603 - lpoA BNILDI_01500 0.53 -0.9 297,631 + lpoA BNILDI_01500 0.55 +0.2 297,632 - lpoA BNILDI_01500 0.55 +0.4 297,632 - lpoA BNILDI_01500 0.55 -1.6 297,704 + lpoA BNILDI_01500 0.58 -0.4 297,705 - lpoA BNILDI_01500 0.58 -0.5 297,770 + lpoA BNILDI_01500 0.62 +0.9 297,770 + lpoA BNILDI_01500 0.62 -1.4 297,777 + lpoA BNILDI_01500 0.62 +0.5 297,824 + lpoA BNILDI_01500 0.64 -0.7 297,839 + lpoA BNILDI_01500 0.65 -0.8 297,970 + lpoA BNILDI_01500 0.71 +0.4 297,984 - lpoA BNILDI_01500 0.72 -0.3 298,131 + lpoA BNILDI_01500 0.79 -0.0 298,132 - lpoA BNILDI_01500 0.79 +0.2 298,132 - lpoA BNILDI_01500 0.79 -0.7 298,215 + lpoA BNILDI_01500 0.83 +1.1 298,377 + +0.0 298,537 + -0.0 298,537 + +0.3 298,538 - -1.2 298,704 + yraN BNILDI_01505 0.49 -0.5 298,704 + yraN BNILDI_01505 0.49 +0.2 298,704 + yraN BNILDI_01505 0.49 -1.2 298,705 - yraN BNILDI_01505 0.49 -0.4 298,904 + -0.0 298,904 + -1.3 298,904 + -1.2 298,904 + -2.4 298,904 + -0.9 298,905 - +0.6 298,908 + +0.7 298,908 + -0.7 299,165 + diaA BNILDI_01510 0.40 -0.1 299,165 + diaA BNILDI_01510 0.40 -0.5 299,171 + diaA BNILDI_01510 0.41 -1.0 299,172 - diaA BNILDI_01510 0.42 +1.8 299,206 + diaA BNILDI_01510 0.47 +0.7 299,207 - diaA BNILDI_01510 0.48 +0.6 299,260 + diaA BNILDI_01510 0.57 +0.8 299,260 + diaA BNILDI_01510 0.57 +0.7 299,260 + diaA BNILDI_01510 0.57 +2.1 299,261 - diaA BNILDI_01510 0.57 +1.1 299,261 - diaA BNILDI_01510 0.57 -0.2 299,261 - diaA BNILDI_01510 0.57 -1.8 299,261 - diaA BNILDI_01510 0.57 +0.5 299,261 - diaA BNILDI_01510 0.57 +1.1 299,261 - diaA BNILDI_01510 0.57 +1.7 299,261 - diaA BNILDI_01510 0.57 -0.4 299,302 + diaA BNILDI_01510 0.64 +0.8 299,302 + diaA BNILDI_01510 0.64 -0.1 299,339 + diaA BNILDI_01510 0.70 +0.1 299,427 - diaA BNILDI_01510 0.85 +3.0 299,451 - diaA BNILDI_01510 0.89 -1.4 299,451 - diaA BNILDI_01510 0.89 -1.6 299,451 - diaA BNILDI_01510 0.89 -0.7 299,523 + -0.4 299,524 - -1.1 299,524 - -0.7 299,524 - +0.1 299,555 + -0.2 299,555 + +0.2 299,556 - +0.4 299,740 + diaA BNILDI_01515 0.37 -0.3 299,828 - diaA BNILDI_01515 0.52 -1.3 299,847 + diaA BNILDI_01515 0.56 -1.1 299,848 - diaA BNILDI_01515 0.56 +0.9 299,894 + diaA BNILDI_01515 0.64 +1.4 299,894 + diaA BNILDI_01515 0.64 +0.1 299,901 - diaA BNILDI_01515 0.65 +0.6
Or see this region's nucleotide sequence