Strain Fitness in Variovorax sp. SCN45 around GFF7035

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
408	+		GFF7033	0.71	+0.2
408	+		GFF7033	0.71	-0.9
409	-		GFF7033	0.71	-2.3
409	-		GFF7033	0.71	+2.7
411	+		GFF7033	0.72	+1.2
411	+		GFF7033	0.72	-1.4
411	+		GFF7033	0.72	-2.2
411	+		GFF7033	0.72	-2.0
411	+		GFF7033	0.72	-1.8
411	+		GFF7033	0.72	-0.6
411	+		GFF7033	0.72	+0.2
411	+		GFF7033	0.72	-0.3
412	-		GFF7033	0.72	-3.2
412	-		GFF7033	0.72	-0.6
412	-		GFF7033	0.72	+1.1
412	-		GFF7033	0.72	-0.4
412	-		GFF7033	0.72	+1.7
412	-		GFF7033	0.72	-2.0
560	+				-0.6
560	+				-0.6
561	-				-1.2
561	-				-1.6
561	-				-0.4
779	+		GFF7034	0.38	-0.5
779	+		GFF7034	0.38	-1.8
779	+		GFF7034	0.38	-0.8
780	-		GFF7034	0.39	-2.4
780	-		GFF7034	0.39	-0.0
780	-		GFF7034	0.39	-1.7
780	-		GFF7034	0.39	-0.7
917	+		GFF7034	0.57	-2.2
917	+		GFF7034	0.57	+0.7
917	+		GFF7034	0.57	+0.7
918	-		GFF7034	0.57	+2.7
918	-		GFF7034	0.57	+0.2
1,297	+				+0.7
1,297	+				-1.3
1,297	+				-0.6
1,297	+				-0.6
1,297	+				+0.1
1,297	+				-0.4
1,297	+				-0.4
1,297	+				+0.7
1,297	+				-2.6
1,297	+				+1.7
1,298	-				-2.9
1,510	+		GFF7035	0.28	-1.8
1,510	+		GFF7035	0.28	-3.1
1,510	+		GFF7035	0.28	-0.8
1,510	+		GFF7035	0.28	-3.9
1,510	+		GFF7035	0.28	-1.8
1,511	-		GFF7035	0.28	-0.6
1,511	-		GFF7035	0.28	-3.1
1,511	-		GFF7035	0.28	-2.1
1,511	-		GFF7035	0.28	-3.8
1,511	-		GFF7035	0.28	-2.8
1,511	-		GFF7035	0.28	-1.6
1,511	-		GFF7035	0.28	-2.8
1,537	+		GFF7035	0.34	-2.5
1,538	-		GFF7035	0.34	-0.6
1,538	-		GFF7035	0.34	-1.6
1,558	+		GFF7035	0.39	-1.8
1,559	-		GFF7035	0.39	-2.6
1,559	-		GFF7035	0.39	-1.5
1,559	-		GFF7035	0.39	-1.4
1,866	+				+0.7
1,867	-				-2.2
1,867	-				-1.3
1,970	+		GFF7036	0.20	-0.6
1,970	+		GFF7036	0.20	-0.7
1,970	+		GFF7036	0.20	-1.1
2,244	-		GFF7036	0.61	-3.8
2,244	-		GFF7036	0.61	+0.2
2,244	-		GFF7036	0.61	+0.2
2,791	+				-0.6
2,791	+				+0.5
2,791	+				-1.3
2,791	+				+0.7
2,791	+				-1.6
2,791	+				-1.8
2,791	+				-0.8
2,791	+				-1.6
2,791	+				+0.2
2,791	+				-1.3
2,791	+				-1.3
2,791	+				-1.1
2,791	+				-0.6
2,792	-				+0.1
2,792	-				-2.1
2,792	-				+0.7
2,792	-				+0.5
2,792	-				+0.2
2,792	-				+0.3
2,792	-				-0.3
2,792	-				+0.7
2,792	-				-2.0
2,792	-				+0.4
2,792	-				-1.4
2,792	-				-1.4
2,792	-				-0.8
2,792	-				-0.3
2,792	-				-2.2
2,792	-				+1.8
2,792	-				+0.3
2,792	-				-1.6
2,792	-				-0.2
2,792	-				+0.2
2,792	-				+1.2
2,792	-				+0.7
2,792	-				-2.5