Strain Fitness in Variovorax sp. SCN45 around GFF6343

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
5,796	+				+1.3
5,797	-				-1.9
5,810	-				+0.4
5,865	+				-0.3
5,865	+				-0.8
5,866	-				-2.3
5,930	+				-0.5
5,931	-				+0.5
5,931	-				+1.4
5,931	-				-1.6
5,931	-				-2.8
5,988	+				+0.2
5,988	+				-1.9
5,989	-				+1.1
5,989	-				-1.3
5,989	-				+0.1
6,044	+				-0.4
6,045	-				-2.5
6,052	+				-0.2
6,052	+				+0.1
6,053	-				-0.5
6,053	-				-0.1
6,053	-				+0.9
6,053	-				-0.2
6,061	+				+0.6
6,061	+				+0.7
6,080	-				-1.1
6,080	-				+2.4
6,080	-				+2.1
6,103	+				+2.3
6,104	-				-0.1
6,104	-				+2.7
6,104	-				+1.5
6,213	+				+0.7
6,213	+				+0.5
6,214	-				+1.3
6,214	-				+0.7
6,214	-				-0.5
6,214	-				-0.9
6,214	-				-2.2
6,263	+				-2.6
6,263	+				+1.8
6,263	+				+0.8
6,263	+				+1.2
6,263	+				-0.3
6,263	+				-1.5
6,263	+				+2.3
6,263	+				-0.1
6,263	+				-1.3
6,263	+				-0.7
6,263	+				+0.3
6,264	-				-0.3
6,264	-				-1.4
6,264	-				-0.6
6,264	-				-0.1
6,264	-				-0.2
6,278	+				-0.5
6,278	+				+0.2
6,278	+				+0.8
6,278	+				-1.9
6,278	+				-1.3
6,278	+				+0.5
6,278	+				+1.0
6,279	-				+0.2
6,279	-				-2.0
6,350	-				+0.3
6,360	+				-2.8
6,360	+				-0.5
6,360	+				-0.3
6,360	+				-1.3
6,360	+				+0.3
6,360	+				-0.7
6,360	+				-0.3
6,360	+				+0.7
6,361	-				+1.8
6,361	-				-2.0
6,420	+		GFF6342	0.21	-1.5
6,420	+		GFF6342	0.21	-1.5
6,421	-		GFF6342	0.21	-0.8
6,421	-		GFF6342	0.21	-0.6
6,421	-		GFF6342	0.21	-2.0
6,427	+		GFF6342	0.23	-0.5
6,427	+		GFF6342	0.23	+2.7
6,428	-		GFF6342	0.23	+0.3
6,637	+		GFF6342	0.82	-0.9
6,637	+		GFF6342	0.82	-0.9
6,637	+		GFF6342	0.82	+0.3
6,637	+		GFF6342	0.82	-0.3
6,637	+		GFF6342	0.82	-2.0
6,638	-		GFF6342	0.83	+0.7
6,638	-		GFF6342	0.83	-1.3
6,638	-		GFF6342	0.83	-0.3
6,638	-		GFF6342	0.83	+0.9
6,638	-		GFF6342	0.83	+1.7
6,638	-		GFF6342	0.83	-0.0
6,678	+				-1.8
6,679	-				-1.1
6,733	+		GFF6343	0.13	-0.3
6,734	-		GFF6343	0.14	-3.0
6,959	+				-1.9
7,134	+				+0.3
7,295	+				-1.0
7,317	+				-0.0
7,318	-				-0.0
7,318	-				-0.3
7,318	-				+0.3
7,340	+				-0.9
7,340	+				-0.3
7,340	+				-0.5
7,340	+				+0.2
7,340	+				-1.5
7,340	+				+1.3
7,340	+				+0.7
7,340	+				-0.5
7,340	+				-0.2
7,340	+				-0.3
7,340	+				+0.7
7,341	-				+0.1
7,341	-				-1.9
7,341	-				-2.1
7,423	+		GFF6344	0.14	+1.8
7,423	+		GFF6344	0.14	+0.9
7,530	-		GFF6344	0.22	-0.6
7,628	-		GFF6344	0.29	-0.6