Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF540 and GFF541 are separated by 24 nucleotides GFF541 and GFF542 are separated by 28 nucleotides GFF542 and GFF543 are separated by 279 nucleotides
GFF540 - Permease of the drug/metabolite transporter (DMT) superfamily, at 579,450 to 580,352
GFF540
GFF541 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 580,377 to 581,102
GFF541
GFF542 - no description, at 581,131 to 581,757
GFF542
GFF543 - Uncharacterized deacetylase PA5390, at 582,037 to 583,191
GFF543
Position (kb) 580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 579.396 kb on + strand at 579.396 kb on + strand at 579.396 kb on + strand at 579.397 kb on - strand at 579.397 kb on - strand at 579.397 kb on - strand at 579.449 kb on + strand at 579.450 kb on - strand at 579.450 kb on - strand at 579.459 kb on + strand at 579.493 kb on + strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.494 kb on - strand at 579.591 kb on + strand, within GFF540 at 579.591 kb on + strand, within GFF540 at 579.591 kb on + strand, within GFF540 at 579.591 kb on + strand, within GFF540 at 579.591 kb on + strand, within GFF540 at 579.591 kb on + strand, within GFF540 at 579.592 kb on - strand, within GFF540 at 579.592 kb on - strand, within GFF540 at 579.685 kb on + strand, within GFF540 at 579.685 kb on + strand, within GFF540 at 579.685 kb on + strand, within GFF540 at 579.685 kb on + strand, within GFF540 at 579.685 kb on + strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.686 kb on - strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.738 kb on + strand, within GFF540 at 579.739 kb on - strand, within GFF540 at 579.739 kb on - strand, within GFF540 at 579.739 kb on - strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.930 kb on + strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.931 kb on - strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.972 kb on + strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.973 kb on - strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.981 kb on + strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 579.982 kb on - strand, within GFF540 at 580.014 kb on + strand, within GFF540 at 580.014 kb on + strand, within GFF540 at 580.014 kb on + strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.015 kb on - strand, within GFF540 at 580.182 kb on + strand, within GFF540 at 580.263 kb on + strand at 580.263 kb on + strand at 580.263 kb on + strand at 580.263 kb on + strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.264 kb on - strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.278 kb on + strand at 580.279 kb on - strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.386 kb on + strand at 580.387 kb on - strand at 580.435 kb on + strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.436 kb on - strand at 580.473 kb on + strand, within GFF541 at 580.473 kb on + strand, within GFF541 at 580.473 kb on + strand, within GFF541 at 580.474 kb on - strand, within GFF541 at 580.474 kb on - strand, within GFF541 at 580.474 kb on - strand, within GFF541 at 580.474 kb on - strand, within GFF541 at 580.478 kb on - strand, within GFF541 at 580.479 kb on + strand, within GFF541 at 580.676 kb on + strand, within GFF541 at 580.677 kb on - strand, within GFF541 at 580.677 kb on - strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.707 kb on + strand, within GFF541 at 580.708 kb on - strand, within GFF541 at 580.708 kb on - strand, within GFF541 at 580.708 kb on - strand, within GFF541 at 580.708 kb on - strand, within GFF541 at 580.869 kb on + strand, within GFF541 at 580.869 kb on + strand, within GFF541 at 580.870 kb on - strand, within GFF541 at 580.870 kb on - strand, within GFF541 at 580.870 kb on - strand, within GFF541 at 580.965 kb on + strand, within GFF541 at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.100 kb on + strand at 581.101 kb on - strand at 581.101 kb on - strand at 581.101 kb on - strand at 581.293 kb on + strand, within GFF542 at 581.294 kb on - strand, within GFF542 at 581.395 kb on + strand, within GFF542 at 581.395 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.514 kb on + strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.515 kb on - strand, within GFF542 at 581.698 kb on + strand at 581.699 kb on - strand at 581.755 kb on + strand at 581.783 kb on + strand at 581.783 kb on + strand at 581.784 kb on - strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.912 kb on + strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.913 kb on - strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.918 kb on + strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.919 kb on - strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.920 kb on + strand at 581.921 kb on - strand at 581.921 kb on - strand at 581.921 kb on - strand at 581.945 kb on + strand at 581.984 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 579,396 + -0.0 579,396 + -2.4 579,396 + +0.0 579,397 - -0.8 579,397 - -4.4 579,397 - -2.7 579,449 + -1.6 579,450 - +1.8 579,450 - +1.6 579,459 + -1.7 579,493 + -1.2 579,494 - -2.0 579,494 - +0.1 579,494 - -0.9 579,591 + GFF540 0.16 -1.1 579,591 + GFF540 0.16 -1.6 579,591 + GFF540 0.16 -0.4 579,591 + GFF540 0.16 -1.6 579,591 + GFF540 0.16 +0.3 579,591 + GFF540 0.16 +0.5 579,592 - GFF540 0.16 -0.9 579,592 - GFF540 0.16 -2.4 579,685 + GFF540 0.26 +0.8 579,685 + GFF540 0.26 -0.1 579,685 + GFF540 0.26 -0.6 579,685 + GFF540 0.26 +0.7 579,685 + GFF540 0.26 -0.6 579,686 - GFF540 0.26 -0.0 579,686 - GFF540 0.26 -1.6 579,686 - GFF540 0.26 -1.9 579,686 - GFF540 0.26 -3.2 579,686 - GFF540 0.26 +0.8 579,686 - GFF540 0.26 +1.4 579,738 + GFF540 0.32 +0.1 579,738 + GFF540 0.32 -1.6 579,738 + GFF540 0.32 -1.3 579,738 + GFF540 0.32 -0.7 579,738 + GFF540 0.32 -1.0 579,738 + GFF540 0.32 -0.2 579,738 + GFF540 0.32 +0.6 579,738 + GFF540 0.32 +1.9 579,738 + GFF540 0.32 -0.6 579,739 - GFF540 0.32 -0.4 579,739 - GFF540 0.32 -0.8 579,739 - GFF540 0.32 -0.0 579,930 + GFF540 0.53 -0.7 579,930 + GFF540 0.53 +0.3 579,930 + GFF540 0.53 -1.9 579,930 + GFF540 0.53 -0.3 579,930 + GFF540 0.53 -2.5 579,930 + GFF540 0.53 -0.2 579,930 + GFF540 0.53 -0.5 579,930 + GFF540 0.53 -0.4 579,930 + GFF540 0.53 -0.8 579,930 + GFF540 0.53 +0.8 579,930 + GFF540 0.53 -2.7 579,930 + GFF540 0.53 +1.4 579,930 + GFF540 0.53 +0.6 579,930 + GFF540 0.53 +0.4 579,930 + GFF540 0.53 -0.9 579,930 + GFF540 0.53 -0.2 579,930 + GFF540 0.53 -0.8 579,930 + GFF540 0.53 -1.1 579,930 + GFF540 0.53 -1.3 579,930 + GFF540 0.53 -0.4 579,930 + GFF540 0.53 +0.1 579,930 + GFF540 0.53 -0.2 579,931 - GFF540 0.53 +0.2 579,931 - GFF540 0.53 -0.3 579,931 - GFF540 0.53 -0.8 579,931 - GFF540 0.53 -0.8 579,931 - GFF540 0.53 +1.7 579,931 - GFF540 0.53 +0.6 579,931 - GFF540 0.53 -2.1 579,972 + GFF540 0.58 +0.4 579,972 + GFF540 0.58 -0.7 579,972 + GFF540 0.58 +0.2 579,972 + GFF540 0.58 -2.2 579,972 + GFF540 0.58 +0.3 579,972 + GFF540 0.58 +1.6 579,972 + GFF540 0.58 +2.7 579,972 + GFF540 0.58 -1.6 579,972 + GFF540 0.58 +0.4 579,972 + GFF540 0.58 -1.5 579,972 + GFF540 0.58 -1.1 579,972 + GFF540 0.58 +1.2 579,972 + GFF540 0.58 +1.6 579,972 + GFF540 0.58 +0.6 579,972 + GFF540 0.58 +1.2 579,972 + GFF540 0.58 +0.6 579,972 + GFF540 0.58 +1.8 579,972 + GFF540 0.58 -0.3 579,972 + GFF540 0.58 -0.5 579,972 + GFF540 0.58 -0.1 579,972 + GFF540 0.58 -1.9 579,972 + GFF540 0.58 -1.8 579,972 + GFF540 0.58 -0.4 579,973 - GFF540 0.58 -0.6 579,973 - GFF540 0.58 -0.2 579,973 - GFF540 0.58 +0.3 579,973 - GFF540 0.58 -1.3 579,973 - GFF540 0.58 -0.0 579,973 - GFF540 0.58 -1.2 579,973 - GFF540 0.58 +1.0 579,973 - GFF540 0.58 -1.0 579,973 - GFF540 0.58 +1.2 579,973 - GFF540 0.58 +0.6 579,973 - GFF540 0.58 -1.3 579,973 - GFF540 0.58 -1.3 579,973 - GFF540 0.58 -0.8 579,973 - GFF540 0.58 -1.0 579,973 - GFF540 0.58 -0.2 579,973 - GFF540 0.58 -1.4 579,973 - GFF540 0.58 +0.6 579,973 - GFF540 0.58 +1.0 579,973 - GFF540 0.58 +0.7 579,973 - GFF540 0.58 -0.9 579,973 - GFF540 0.58 +0.4 579,973 - GFF540 0.58 -1.0 579,981 + GFF540 0.59 -2.0 579,981 + GFF540 0.59 +0.6 579,981 + GFF540 0.59 -1.6 579,981 + GFF540 0.59 -0.1 579,981 + GFF540 0.59 +0.4 579,981 + GFF540 0.59 +3.0 579,982 - GFF540 0.59 -0.9 579,982 - GFF540 0.59 -0.6 579,982 - GFF540 0.59 -1.5 579,982 - GFF540 0.59 +0.3 579,982 - GFF540 0.59 +0.6 579,982 - GFF540 0.59 +1.8 579,982 - GFF540 0.59 -0.1 579,982 - GFF540 0.59 -0.6 579,982 - GFF540 0.59 -2.7 580,014 + GFF540 0.62 -1.0 580,014 + GFF540 0.62 -1.9 580,014 + GFF540 0.62 -1.6 580,015 - GFF540 0.63 -0.8 580,015 - GFF540 0.63 +0.8 580,015 - GFF540 0.63 +1.2 580,015 - GFF540 0.63 +0.7 580,015 - GFF540 0.63 -1.4 580,015 - GFF540 0.63 -2.4 580,015 - GFF540 0.63 -0.4 580,182 + GFF540 0.81 -3.4 580,263 + -3.2 580,263 + +3.1 580,263 + +1.4 580,263 + +1.6 580,264 - -0.1 580,264 - -0.0 580,264 - +0.5 580,264 - +1.1 580,264 - -0.0 580,264 - -1.3 580,264 - -0.0 580,264 - -3.1 580,264 - +0.0 580,278 + -0.4 580,278 + +1.4 580,278 + +0.3 580,279 - -0.7 580,386 + +0.4 580,386 + -1.6 580,386 + +0.6 580,386 + +0.7 580,386 + -1.2 580,386 + -1.0 580,386 + +1.1 580,386 + -1.8 580,386 + -1.0 580,387 - -1.8 580,435 + -2.2 580,436 - +0.1 580,436 - -0.2 580,436 - -1.3 580,436 - -0.5 580,436 - +0.1 580,436 - -1.6 580,436 - +1.6 580,473 + GFF541 0.13 -1.0 580,473 + GFF541 0.13 +1.7 580,473 + GFF541 0.13 -2.2 580,474 - GFF541 0.13 -0.0 580,474 - GFF541 0.13 -0.7 580,474 - GFF541 0.13 +0.7 580,474 - GFF541 0.13 -0.6 580,478 - GFF541 0.14 -0.8 580,479 + GFF541 0.14 -1.5 580,676 + GFF541 0.41 -0.2 580,677 - GFF541 0.41 -1.9 580,677 - GFF541 0.41 -1.5 580,707 + GFF541 0.45 +1.0 580,707 + GFF541 0.45 +0.7 580,707 + GFF541 0.45 +1.8 580,707 + GFF541 0.45 -1.1 580,707 + GFF541 0.45 -1.4 580,707 + GFF541 0.45 -1.9 580,707 + GFF541 0.45 -0.7 580,707 + GFF541 0.45 -0.5 580,708 - GFF541 0.46 -3.0 580,708 - GFF541 0.46 -1.5 580,708 - GFF541 0.46 -0.6 580,708 - GFF541 0.46 -2.0 580,869 + GFF541 0.68 +0.7 580,869 + GFF541 0.68 -1.0 580,870 - GFF541 0.68 +0.1 580,870 - GFF541 0.68 -0.3 580,870 - GFF541 0.68 -0.1 580,965 + GFF541 0.81 -1.6 581,100 + -1.0 581,100 + -1.8 581,100 + -0.1 581,100 + +1.1 581,100 + -1.5 581,100 + +0.1 581,100 + -1.0 581,101 - -0.4 581,101 - +1.7 581,101 - -0.7 581,293 + GFF542 0.26 +1.4 581,294 - GFF542 0.26 -0.8 581,395 + GFF542 0.42 -2.0 581,395 + GFF542 0.42 +2.1 581,514 + GFF542 0.61 +1.3 581,514 + GFF542 0.61 -2.1 581,514 + GFF542 0.61 -2.0 581,514 + GFF542 0.61 -2.9 581,514 + GFF542 0.61 +0.8 581,514 + GFF542 0.61 -1.7 581,515 - GFF542 0.61 +0.9 581,515 - GFF542 0.61 -3.0 581,515 - GFF542 0.61 +1.0 581,515 - GFF542 0.61 -0.6 581,515 - GFF542 0.61 -2.8 581,515 - GFF542 0.61 -2.8 581,698 + -0.1 581,699 - -0.0 581,755 + -2.2 581,783 + -1.0 581,783 + -3.1 581,784 - +0.6 581,912 + +0.6 581,912 + +0.8 581,912 + +1.7 581,912 + -1.6 581,912 + +1.5 581,912 + +1.5 581,913 - -0.0 581,913 - -2.3 581,913 - +2.1 581,913 - +0.8 581,913 - -4.3 581,913 - +0.1 581,913 - -0.3 581,918 + +1.1 581,918 + -2.6 581,918 + -1.0 581,918 + -0.1 581,918 + -0.8 581,918 + -1.1 581,918 + -1.0 581,918 + -0.2 581,918 + -3.6 581,918 + -1.6 581,918 + -2.1 581,918 + +0.3 581,918 + -0.2 581,918 + -1.0 581,918 + -0.0 581,918 + -0.1 581,919 - +1.6 581,919 - +2.0 581,919 - -0.8 581,919 - -0.2 581,919 - -2.9 581,919 - -1.8 581,919 - +0.0 581,919 - +0.7 581,919 - +0.6 581,919 - -1.2 581,919 - +0.3 581,919 - -0.6 581,919 - +1.2 581,919 - -0.3 581,919 - -2.0 581,919 - -1.6 581,919 - +0.4 581,919 - -0.8 581,919 - +2.1 581,919 - -0.1 581,919 - -1.4 581,919 - -0.4 581,919 - +2.6 581,920 + -1.2 581,920 + +0.5 581,920 + +0.1 581,920 + -0.7 581,920 + -3.2 581,920 + -2.1 581,920 + -0.1 581,920 + -2.4 581,920 + -0.5 581,920 + -3.4 581,921 - -0.4 581,921 - +0.7 581,921 - -2.2 581,945 + -1.3 581,984 - -0.3
Or see this region's nucleotide sequence