Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1741 and GFF1742 are separated by 116 nucleotides GFF1742 and GFF1743 are separated by 46 nucleotides GFF1743 and GFF1744 are separated by 139 nucleotides
GFF1741 - UPF0324 inner membrane protein YeiH, at 400,904 to 401,956
GFF1741
GFF1742 - hypothetical protein, at 402,073 to 402,492
GFF1742
GFF1743 - Transcriptional regulator, LysR family, at 402,539 to 403,558
GFF1743
GFF1744 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 403,698 to 405,272
GFF1744
Position (kb) 402
403
404 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 402.347 kb on - strand, within GFF1742 at 402.560 kb on + strand at 402.560 kb on + strand at 402.614 kb on + strand at 402.614 kb on + strand at 402.990 kb on - strand, within GFF1743 at 402.990 kb on - strand, within GFF1743 at 403.046 kb on + strand, within GFF1743 at 403.233 kb on + strand, within GFF1743 at 403.233 kb on + strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.234 kb on - strand, within GFF1743 at 403.406 kb on + strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.407 kb on - strand, within GFF1743 at 403.557 kb on - strand at 403.809 kb on + strand at 403.809 kb on + strand at 403.810 kb on - strand at 403.810 kb on - strand at 403.893 kb on + strand, within GFF1744 at 403.893 kb on + strand, within GFF1744 at 403.893 kb on + strand, within GFF1744 at 403.894 kb on - strand, within GFF1744 at 403.894 kb on - strand, within GFF1744 at 403.938 kb on + strand, within GFF1744 at 403.939 kb on - strand, within GFF1744 at 403.939 kb on - strand, within GFF1744 at 404.130 kb on + strand, within GFF1744 at 404.130 kb on + strand, within GFF1744 at 404.131 kb on - strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.208 kb on + strand, within GFF1744 at 404.209 kb on - strand, within GFF1744 at 404.209 kb on - strand, within GFF1744 at 404.506 kb on + strand, within GFF1744
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 402,347 - GFF1742 0.65 +1.3 402,560 + +1.1 402,560 + -1.9 402,614 + +2.3 402,614 + -1.1 402,990 - GFF1743 0.44 +0.4 402,990 - GFF1743 0.44 +0.2 403,046 + GFF1743 0.50 +0.1 403,233 + GFF1743 0.68 +0.6 403,233 + GFF1743 0.68 +2.5 403,234 - GFF1743 0.68 +2.8 403,234 - GFF1743 0.68 +0.7 403,234 - GFF1743 0.68 -1.2 403,406 + GFF1743 0.85 -3.4 403,407 - GFF1743 0.85 -1.2 403,407 - GFF1743 0.85 +0.3 403,407 - GFF1743 0.85 -0.9 403,557 - +2.4 403,809 + -1.2 403,809 + -1.3 403,810 - -0.2 403,810 - +2.1 403,893 + GFF1744 0.12 -2.3 403,893 + GFF1744 0.12 -3.8 403,893 + GFF1744 0.12 -2.4 403,894 - GFF1744 0.12 +0.8 403,894 - GFF1744 0.12 +0.0 403,938 + GFF1744 0.15 -2.1 403,939 - GFF1744 0.15 -1.0 403,939 - GFF1744 0.15 -1.6 404,130 + GFF1744 0.27 +0.1 404,130 + GFF1744 0.27 +0.5 404,131 - GFF1744 0.27 -0.7 404,208 + GFF1744 0.32 -1.7 404,208 + GFF1744 0.32 -1.7 404,208 + GFF1744 0.32 +0.6 404,209 - GFF1744 0.32 +0.9 404,209 - GFF1744 0.32 +0.8 404,506 + GFF1744 0.51 +1.5
Or see this region's nucleotide sequence