Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1707 and GFF1708 are separated by 1 nucleotides GFF1708 and GFF1709 are separated by 347 nucleotides GFF1709 and GFF1710 are separated by 11 nucleotides GFF1710 and GFF1711 are separated by 424 nucleotides
GFF1707 - no description, at 354,207 to 354,416
GFF1707
GFF1708 - no description, at 354,418 to 354,618
GFF1708
GFF1709 - no description, at 354,966 to 355,295
GFF1709
GFF1710 - hypothetical protein, at 355,307 to 356,326
GFF1710
GFF1711 - DUF3701 domain / Site-specific tyrosine recombinase, at 356,751 to 358,595
GFF1711
Position (kb) 355
356
357 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 354.424 kb on + strand at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.671 kb on + strand at 354.672 kb on - strand at 354.749 kb on + strand at 354.750 kb on - strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.973 kb on - strand at 354.973 kb on - strand at 355.145 kb on + strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.396 kb on + strand at 355.397 kb on - strand at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.575 kb on + strand, within GFF1710 at 355.576 kb on - strand, within GFF1710 at 355.728 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 356.327 kb on - strand at 356.362 kb on + strand at 356.362 kb on + strand at 356.363 kb on - strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.490 kb on - strand at 356.490 kb on - strand at 356.648 kb on + strand at 356.648 kb on + strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.752 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.980 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 354,424 + -1.4 354,591 + GFF1708 0.86 +0.6 354,591 + GFF1708 0.86 -0.2 354,591 + GFF1708 0.86 +1.6 354,592 - GFF1708 0.87 +0.4 354,592 - GFF1708 0.87 +0.0 354,592 - GFF1708 0.87 +1.4 354,592 - GFF1708 0.87 +0.6 354,618 + -1.0 354,618 + +1.6 354,618 + -1.3 354,618 + +0.4 354,618 + -0.3 354,618 + +1.4 354,618 + -0.9 354,618 + -1.4 354,618 + +0.4 354,618 + +2.1 354,619 - +0.7 354,619 - -0.1 354,619 - -0.7 354,619 - -1.3 354,671 + -0.1 354,672 - +1.0 354,749 + +0.1 354,750 - +0.4 354,849 + +0.7 354,849 + +2.3 354,849 + -0.5 354,849 + -0.9 354,849 + -0.2 354,849 + -2.1 354,849 + -1.8 354,849 + +0.3 354,850 - -1.7 354,850 - -0.9 354,850 - -0.6 354,850 - +0.0 354,850 - -3.3 354,973 - -0.1 354,973 - +1.1 355,145 + GFF1709 0.54 +1.4 355,146 - GFF1709 0.55 -0.2 355,146 - GFF1709 0.55 -0.6 355,146 - GFF1709 0.55 -2.2 355,146 - GFF1709 0.55 -2.3 355,146 - GFF1709 0.55 +0.5 355,146 - GFF1709 0.55 -4.0 355,396 + -1.4 355,397 - -0.2 355,410 + GFF1710 0.10 +1.4 355,410 + GFF1710 0.10 +1.9 355,410 + GFF1710 0.10 -1.6 355,410 + GFF1710 0.10 +0.4 355,410 + GFF1710 0.10 +1.2 355,410 + GFF1710 0.10 -0.4 355,411 - GFF1710 0.10 -1.9 355,411 - GFF1710 0.10 +0.6 355,575 + GFF1710 0.26 -0.4 355,576 - GFF1710 0.26 -1.3 355,728 + GFF1710 0.41 -1.6 355,815 + GFF1710 0.50 +0.6 355,815 + GFF1710 0.50 -1.7 355,815 + GFF1710 0.50 -1.7 355,815 + GFF1710 0.50 -1.3 355,815 + GFF1710 0.50 -2.0 355,815 + GFF1710 0.50 +0.5 355,815 + GFF1710 0.50 -0.8 355,815 + GFF1710 0.50 -1.7 355,815 + GFF1710 0.50 -0.7 355,816 - GFF1710 0.50 -0.7 355,816 - GFF1710 0.50 -2.6 355,816 - GFF1710 0.50 +2.0 355,816 - GFF1710 0.50 -2.5 355,816 - GFF1710 0.50 +0.3 355,816 - GFF1710 0.50 +0.8 355,816 - GFF1710 0.50 +1.4 355,816 - GFF1710 0.50 -0.6 355,816 - GFF1710 0.50 -1.0 355,816 - GFF1710 0.50 +1.2 355,816 - GFF1710 0.50 -1.0 355,816 - GFF1710 0.50 -0.7 355,877 + GFF1710 0.56 +1.1 355,877 + GFF1710 0.56 +1.0 355,877 + GFF1710 0.56 +2.7 355,953 + GFF1710 0.63 +0.0 355,953 + GFF1710 0.63 -2.2 355,953 + GFF1710 0.63 -1.1 355,953 + GFF1710 0.63 -0.5 355,954 - GFF1710 0.63 +0.9 355,954 - GFF1710 0.63 +0.6 355,954 - GFF1710 0.63 -2.3 356,327 - -0.2 356,362 + +1.7 356,362 + -2.6 356,363 - +0.1 356,489 + +0.2 356,489 + -0.1 356,489 + -1.1 356,489 + +1.1 356,490 - -0.4 356,490 - +0.4 356,648 + +0.1 356,648 + -1.4 356,649 - -1.1 356,649 - -0.4 356,649 - -0.0 356,649 - +0.1 356,649 - +0.6 356,649 - +2.1 356,649 - -0.9 356,752 + -0.1 356,776 + +0.1 356,776 + +0.4 356,776 + -2.1 356,776 + -1.8 356,777 - -2.8 356,777 - +0.2 356,777 - +1.1 356,777 - -0.4 356,777 - -3.9 356,980 + GFF1711 0.12 +0.7 357,283 + GFF1711 0.29 +1.0 357,283 + GFF1711 0.29 -0.1 357,284 - GFF1711 0.29 -0.3 357,284 - GFF1711 0.29 -0.9 357,284 - GFF1711 0.29 -2.1 357,284 - GFF1711 0.29 +0.2
Or see this region's nucleotide sequence