Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1363 and GFF1364 are separated by 18 nucleotides GFF1364 and GFF1365 are separated by 28 nucleotides GFF1365 and GFF1366 are separated by 72 nucleotides
GFF1363 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 704,012 to 706,783
GFF1363
GFF1364 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 706,802 to 708,526
GFF1364
GFF1365 - no description, at 708,555 to 709,079
GFF1365
GFF1366 - Uncharacterized MFS-type transporter, at 709,152 to 710,342
GFF1366
Position (kb) 706
707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 705.812 kb on + strand, within GFF1363 at 705.813 kb on - strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.920 kb on + strand, within GFF1363 at 705.921 kb on - strand, within GFF1363 at 705.921 kb on - strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.037 kb on + strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.038 kb on - strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.142 kb on + strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.143 kb on - strand, within GFF1363 at 706.295 kb on + strand, within GFF1363 at 706.296 kb on - strand, within GFF1363 at 706.372 kb on - strand, within GFF1363 at 706.427 kb on + strand, within GFF1363 at 706.697 kb on + strand at 706.698 kb on - strand at 706.839 kb on - strand at 706.854 kb on + strand at 706.854 kb on + strand at 706.854 kb on + strand at 706.855 kb on - strand at 707.235 kb on - strand, within GFF1364 at 707.805 kb on + strand, within GFF1364 at 707.806 kb on - strand, within GFF1364 at 707.806 kb on - strand, within GFF1364 at 707.806 kb on - strand, within GFF1364 at 708.169 kb on - strand, within GFF1364 at 708.570 kb on + strand at 708.570 kb on + strand at 708.570 kb on + strand at 708.571 kb on - strand at 708.571 kb on - strand at 708.781 kb on + strand, within GFF1365 at 708.781 kb on + strand, within GFF1365 at 708.781 kb on + strand, within GFF1365 at 708.781 kb on + strand, within GFF1365 at 708.782 kb on - strand, within GFF1365 at 708.782 kb on - strand, within GFF1365 at 708.782 kb on - strand, within GFF1365 at 708.788 kb on + strand, within GFF1365 at 708.788 kb on + strand, within GFF1365 at 708.788 kb on + strand, within GFF1365 at 708.789 kb on - strand, within GFF1365 at 708.789 kb on - strand, within GFF1365 at 708.789 kb on - strand, within GFF1365 at 708.800 kb on + strand, within GFF1365 at 708.857 kb on - strand, within GFF1365 at 708.991 kb on + strand, within GFF1365 at 708.991 kb on + strand, within GFF1365 at 708.991 kb on + strand, within GFF1365 at 708.991 kb on + strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 708.992 kb on - strand, within GFF1365 at 709.091 kb on + strand at 709.091 kb on + strand at 709.091 kb on + strand at 709.092 kb on - strand at 709.092 kb on - strand at 709.127 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 705,812 + GFF1363 0.65 -2.1 705,813 - GFF1363 0.65 +0.6 705,920 + GFF1363 0.69 +0.2 705,920 + GFF1363 0.69 +1.0 705,920 + GFF1363 0.69 -3.6 705,921 - GFF1363 0.69 -1.9 705,921 - GFF1363 0.69 +0.0 706,037 + GFF1363 0.73 +1.4 706,037 + GFF1363 0.73 -0.4 706,037 + GFF1363 0.73 +0.7 706,037 + GFF1363 0.73 +0.1 706,037 + GFF1363 0.73 -1.9 706,038 - GFF1363 0.73 -2.0 706,038 - GFF1363 0.73 +0.4 706,038 - GFF1363 0.73 +0.6 706,038 - GFF1363 0.73 -0.3 706,038 - GFF1363 0.73 +1.4 706,142 + GFF1363 0.77 +0.4 706,142 + GFF1363 0.77 -0.7 706,142 + GFF1363 0.77 -1.1 706,143 - GFF1363 0.77 -1.0 706,143 - GFF1363 0.77 +0.2 706,143 - GFF1363 0.77 +0.0 706,143 - GFF1363 0.77 -2.2 706,143 - GFF1363 0.77 -1.1 706,295 + GFF1363 0.82 -0.8 706,296 - GFF1363 0.82 -1.6 706,372 - GFF1363 0.85 -1.7 706,427 + GFF1363 0.87 -0.2 706,697 + -1.3 706,698 - -2.7 706,839 - -0.5 706,854 + +0.1 706,854 + -0.0 706,854 + -0.6 706,855 - -1.2 707,235 - GFF1364 0.25 -2.8 707,805 + GFF1364 0.58 +2.0 707,806 - GFF1364 0.58 -1.0 707,806 - GFF1364 0.58 -2.1 707,806 - GFF1364 0.58 -2.6 708,169 - GFF1364 0.79 -1.0 708,570 + -2.3 708,570 + -3.5 708,570 + -0.4 708,571 - -3.2 708,571 - -1.6 708,781 + GFF1365 0.43 -0.2 708,781 + GFF1365 0.43 +0.2 708,781 + GFF1365 0.43 +2.0 708,781 + GFF1365 0.43 +1.1 708,782 - GFF1365 0.43 +1.0 708,782 - GFF1365 0.43 -1.0 708,782 - GFF1365 0.43 +1.4 708,788 + GFF1365 0.44 +0.5 708,788 + GFF1365 0.44 +1.3 708,788 + GFF1365 0.44 -2.0 708,789 - GFF1365 0.45 -0.2 708,789 - GFF1365 0.45 -1.0 708,789 - GFF1365 0.45 -2.3 708,800 + GFF1365 0.47 -0.2 708,857 - GFF1365 0.58 +0.3 708,991 + GFF1365 0.83 -1.0 708,991 + GFF1365 0.83 +1.1 708,991 + GFF1365 0.83 -0.3 708,991 + GFF1365 0.83 +0.5 708,992 - GFF1365 0.83 -1.7 708,992 - GFF1365 0.83 -1.7 708,992 - GFF1365 0.83 +1.1 708,992 - GFF1365 0.83 +1.8 708,992 - GFF1365 0.83 +0.7 708,992 - GFF1365 0.83 +0.2 708,992 - GFF1365 0.83 +0.1 708,992 - GFF1365 0.83 -1.9 708,992 - GFF1365 0.83 -0.1 709,091 + +0.0 709,091 + -1.4 709,091 + +0.3 709,092 - -1.5 709,092 - +0.6 709,127 + -1.3
Or see this region's nucleotide sequence