Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1204 and GFF1205 are separated by 21 nucleotides GFF1205 and GFF1206 overlap by 4 nucleotides GFF1206 and GFF1207 are separated by 222 nucleotides GFF1207 and GFF1208 are separated by 94 nucleotides
GFF1204 - Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8), at 522,448 to 523,068
GFF1204
GFF1205 - Oxidoreductase probably involved in sulfite reduction, at 523,090 to 523,485
GFF1205
GFF1206 - Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2), at 523,482 to 525,260
GFF1206
GFF1207 - no description, at 525,483 to 525,824
GFF1207
GFF1208 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 525,919 to 526,611
GFF1208
Position (kb) 523
524
525
526 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.506 kb on + strand at 522.507 kb on - strand at 522.507 kb on - strand at 522.542 kb on + strand, within GFF1204 at 522.543 kb on - strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.812 kb on + strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.813 kb on - strand, within GFF1204 at 522.863 kb on + strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.864 kb on - strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.881 kb on + strand, within GFF1204 at 522.882 kb on - strand, within GFF1204 at 523.076 kb on + strand at 523.076 kb on + strand at 523.077 kb on - strand at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.139 kb on + strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.140 kb on - strand, within GFF1205 at 523.723 kb on + strand, within GFF1206 at 523.723 kb on + strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.724 kb on - strand, within GFF1206 at 523.856 kb on - strand, within GFF1206 at 524.383 kb on + strand, within GFF1206 at 524.383 kb on + strand, within GFF1206 at 524.384 kb on - strand, within GFF1206 at 524.384 kb on - strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.407 kb on + strand, within GFF1206 at 524.408 kb on - strand, within GFF1206 at 524.452 kb on + strand, within GFF1206 at 524.452 kb on + strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.453 kb on - strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.482 kb on + strand, within GFF1206 at 524.483 kb on - strand, within GFF1206 at 524.506 kb on + strand, within GFF1206 at 524.506 kb on + strand, within GFF1206 at 524.507 kb on - strand, within GFF1206 at 524.758 kb on + strand, within GFF1206 at 524.758 kb on + strand, within GFF1206 at 524.947 kb on + strand, within GFF1206 at 524.947 kb on + strand, within GFF1206 at 524.948 kb on - strand, within GFF1206 at 524.948 kb on - strand, within GFF1206 at 525.005 kb on - strand, within GFF1206 at 525.005 kb on - strand, within GFF1206 at 525.113 kb on - strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.124 kb on + strand at 525.125 kb on - strand at 525.125 kb on - strand at 525.125 kb on - strand at 525.250 kb on + strand at 525.250 kb on + strand at 525.250 kb on + strand at 525.250 kb on + strand at 525.251 kb on - strand at 525.256 kb on + strand at 525.256 kb on + strand at 525.256 kb on + strand at 525.256 kb on + strand at 525.256 kb on + strand at 525.257 kb on - strand at 525.257 kb on - strand at 525.257 kb on - strand at 525.257 kb on - strand at 525.257 kb on - strand at 525.296 kb on + strand at 525.296 kb on + strand at 525.296 kb on + strand at 525.296 kb on + strand at 525.296 kb on + strand at 525.297 kb on - strand at 525.297 kb on - strand at 525.297 kb on - strand at 525.297 kb on - strand at 525.357 kb on - strand at 525.383 kb on + strand at 525.383 kb on + strand at 525.389 kb on + strand at 525.389 kb on + strand at 525.390 kb on - strand at 525.390 kb on - strand at 525.431 kb on + strand at 525.432 kb on - strand at 525.432 kb on - strand at 525.432 kb on - strand at 525.457 kb on + strand at 525.457 kb on + strand at 525.457 kb on + strand at 525.458 kb on - strand at 525.713 kb on + strand, within GFF1207 at 525.715 kb on + strand, within GFF1207 at 525.715 kb on + strand, within GFF1207 at 525.715 kb on + strand, within GFF1207 at 525.716 kb on - strand, within GFF1207 at 525.716 kb on - strand, within GFF1207 at 525.716 kb on - strand, within GFF1207 at 525.716 kb on - strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.778 kb on + strand, within GFF1207 at 525.779 kb on + strand, within GFF1207 at 525.779 kb on - strand, within GFF1207 at 525.779 kb on - strand, within GFF1207 at 525.779 kb on - strand, within GFF1207 at 525.779 kb on - strand, within GFF1207 at 525.920 kb on + strand at 525.921 kb on - strand at 526.055 kb on + strand, within GFF1208 at 526.055 kb on + strand, within GFF1208 at 526.055 kb on + strand, within GFF1208 at 526.055 kb on + strand, within GFF1208 at 526.056 kb on - strand, within GFF1208 at 526.056 kb on - strand, within GFF1208 at 526.064 kb on + strand, within GFF1208 at 526.064 kb on + strand, within GFF1208 at 526.064 kb on + strand, within GFF1208 at 526.065 kb on - strand, within GFF1208 at 526.065 kb on - strand, within GFF1208
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 522,506 + -3.0 522,506 + -1.8 522,506 + -0.7 522,506 + -3.5 522,506 + -2.6 522,507 - -3.8 522,507 - -1.4 522,542 + GFF1204 0.15 -4.1 522,543 - GFF1204 0.15 -2.8 522,812 + GFF1204 0.59 -4.4 522,812 + GFF1204 0.59 -2.9 522,813 - GFF1204 0.59 -0.4 522,813 - GFF1204 0.59 +1.2 522,813 - GFF1204 0.59 -5.1 522,813 - GFF1204 0.59 -2.1 522,863 + GFF1204 0.67 -2.4 522,864 - GFF1204 0.67 -4.8 522,864 - GFF1204 0.67 -2.2 522,864 - GFF1204 0.67 -0.4 522,864 - GFF1204 0.67 -1.6 522,881 + GFF1204 0.70 -0.7 522,881 + GFF1204 0.70 -1.8 522,881 + GFF1204 0.70 -1.3 522,882 - GFF1204 0.70 -3.3 523,076 + -1.9 523,076 + -1.9 523,077 - -1.6 523,139 + GFF1205 0.12 -2.9 523,139 + GFF1205 0.12 -2.7 523,139 + GFF1205 0.12 -1.9 523,139 + GFF1205 0.12 -1.4 523,139 + GFF1205 0.12 -2.7 523,139 + GFF1205 0.12 -4.8 523,140 - GFF1205 0.13 -2.2 523,140 - GFF1205 0.13 -2.3 523,723 + GFF1206 0.14 -0.4 523,723 + GFF1206 0.14 -2.4 523,724 - GFF1206 0.14 -2.1 523,724 - GFF1206 0.14 -2.1 523,856 - GFF1206 0.21 +0.3 524,383 + GFF1206 0.51 -2.0 524,383 + GFF1206 0.51 -1.1 524,384 - GFF1206 0.51 -2.4 524,384 - GFF1206 0.51 -2.3 524,407 + GFF1206 0.52 -1.4 524,407 + GFF1206 0.52 -0.9 524,407 + GFF1206 0.52 -1.6 524,407 + GFF1206 0.52 -0.7 524,408 - GFF1206 0.52 -1.8 524,452 + GFF1206 0.55 -0.4 524,452 + GFF1206 0.55 -1.3 524,453 - GFF1206 0.55 -0.9 524,453 - GFF1206 0.55 -2.0 524,453 - GFF1206 0.55 -2.7 524,453 - GFF1206 0.55 -4.6 524,453 - GFF1206 0.55 -2.7 524,453 - GFF1206 0.55 -1.1 524,453 - GFF1206 0.55 -0.7 524,453 - GFF1206 0.55 -1.7 524,482 + GFF1206 0.56 -2.3 524,482 + GFF1206 0.56 -3.2 524,482 + GFF1206 0.56 -2.8 524,483 - GFF1206 0.56 -0.4 524,506 + GFF1206 0.58 -0.4 524,506 + GFF1206 0.58 -0.7 524,507 - GFF1206 0.58 -0.4 524,758 + GFF1206 0.72 -0.9 524,758 + GFF1206 0.72 -3.7 524,947 + GFF1206 0.82 -3.0 524,947 + GFF1206 0.82 -2.5 524,948 - GFF1206 0.82 -4.3 524,948 - GFF1206 0.82 +0.9 525,005 - GFF1206 0.86 -1.4 525,005 - GFF1206 0.86 -2.8 525,113 - -0.9 525,124 + -3.8 525,124 + -0.9 525,124 + -2.2 525,124 + -3.0 525,124 + -2.1 525,124 + -1.3 525,124 + +0.1 525,124 + -1.7 525,125 - -4.3 525,125 - -2.4 525,125 - -2.8 525,250 + -3.7 525,250 + -2.6 525,250 + -1.1 525,250 + -1.7 525,251 - +1.9 525,256 + -3.8 525,256 + -3.5 525,256 + -1.7 525,256 + -1.6 525,256 + -2.6 525,257 - -3.8 525,257 - -2.3 525,257 - -2.0 525,257 - -3.5 525,257 - -1.9 525,296 + -3.0 525,296 + -3.5 525,296 + -1.4 525,296 + -3.6 525,296 + -3.2 525,297 - +0.9 525,297 - -1.2 525,297 - -1.8 525,297 - +0.3 525,357 - -0.7 525,383 + -1.3 525,383 + -1.4 525,389 + +0.3 525,389 + +0.5 525,390 - +0.4 525,390 - +0.2 525,431 + +0.2 525,432 - -1.3 525,432 - -0.3 525,432 - +0.2 525,457 + -1.4 525,457 + +0.9 525,457 + +0.3 525,458 - +1.6 525,713 + GFF1207 0.67 +0.9 525,715 + GFF1207 0.68 +0.2 525,715 + GFF1207 0.68 +1.1 525,715 + GFF1207 0.68 -0.4 525,716 - GFF1207 0.68 +4.5 525,716 - GFF1207 0.68 +0.0 525,716 - GFF1207 0.68 +1.9 525,716 - GFF1207 0.68 +2.4 525,778 + GFF1207 0.86 +0.4 525,778 + GFF1207 0.86 -2.2 525,778 + GFF1207 0.86 -2.4 525,778 + GFF1207 0.86 +1.9 525,778 + GFF1207 0.86 +0.9 525,778 + GFF1207 0.86 +1.6 525,779 + GFF1207 0.87 +0.2 525,779 - GFF1207 0.87 +0.9 525,779 - GFF1207 0.87 +0.9 525,779 - GFF1207 0.87 +0.9 525,779 - GFF1207 0.87 -1.1 525,920 + -0.6 525,921 - -0.9 526,055 + GFF1208 0.20 -0.9 526,055 + GFF1208 0.20 -0.3 526,055 + GFF1208 0.20 -0.1 526,055 + GFF1208 0.20 -0.9 526,056 - GFF1208 0.20 -1.7 526,056 - GFF1208 0.20 +0.7 526,064 + GFF1208 0.21 -2.1 526,064 + GFF1208 0.21 -0.6 526,064 + GFF1208 0.21 -1.0 526,065 - GFF1208 0.21 +0.6 526,065 - GFF1208 0.21 -1.2
Or see this region's nucleotide sequence