Strain Fitness in Variovorax sp. SCN45 around GFF5276

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
143,598	+		GFF5275	0.24	-2.0
143,598	+		GFF5275	0.24	-2.7
143,626	-		GFF5275	0.27	-1.3
143,626	-		GFF5275	0.27	+0.2
143,626	-		GFF5275	0.27	-3.1
143,695	-		GFF5275	0.33	-1.3
143,724	+		GFF5275	0.36	+1.1
143,724	+		GFF5275	0.36	-1.3
143,725	-		GFF5275	0.36	-0.5
143,913	+		GFF5275	0.54	+0.9
143,913	+		GFF5275	0.54	-1.8
143,913	+		GFF5275	0.54	+0.9
143,913	+		GFF5275	0.54	-0.9
143,913	+		GFF5275	0.54	-1.3
143,914	-		GFF5275	0.54	-0.1
143,914	-		GFF5275	0.54	-0.2
143,914	-		GFF5275	0.54	+2.8
143,914	-		GFF5275	0.54	+1.3
143,914	-		GFF5275	0.54	-3.5
143,914	-		GFF5275	0.54	-3.1
143,914	-		GFF5275	0.54	-1.3
143,914	-		GFF5275	0.54	+3.3
143,914	-		GFF5275	0.54	-0.7
144,012	+		GFF5275	0.64	-0.3
144,012	+		GFF5275	0.64	-1.4
144,012	+		GFF5275	0.64	-1.3
144,523	+				-2.6
144,523	+				-1.3
144,523	+				-2.1
144,523	+				-2.7
144,524	-				-2.2
144,524	-				-0.6
144,635	-		GFF5276	0.14	-1.5
144,635	-		GFF5276	0.14	-3.1
144,668	-		GFF5276	0.16	-3.4
144,673	+		GFF5276	0.17	-2.3
144,674	-		GFF5276	0.17	-4.0
144,793	+		GFF5276	0.25	-3.1
144,794	-		GFF5276	0.25	-1.1
144,794	-		GFF5276	0.25	-3.8
144,796	+		GFF5276	0.25	-4.8
144,796	+		GFF5276	0.25	-4.7
144,796	+		GFF5276	0.25	-4.1
144,796	+		GFF5276	0.25	+0.3
144,796	+		GFF5276	0.25	-0.6
144,796	+		GFF5276	0.25	-4.4
144,797	-		GFF5276	0.25	-2.3
144,797	-		GFF5276	0.25	-3.6
144,797	-		GFF5276	0.25	-2.1
144,797	-		GFF5276	0.25	-3.8
144,797	-		GFF5276	0.25	-2.2
144,898	+		GFF5276	0.32	-1.5
144,898	+		GFF5276	0.32	-3.0
144,899	-		GFF5276	0.32	-3.1
144,899	-		GFF5276	0.32	-2.0
144,899	-		GFF5276	0.32	-2.0
145,276	+		GFF5276	0.59	-2.2
145,276	+		GFF5276	0.59	-3.6
145,276	+		GFF5276	0.59	-2.2
145,277	-		GFF5276	0.59	-2.5
145,277	-		GFF5276	0.59	-3.5
145,277	-		GFF5276	0.59	-2.7
145,405	+		GFF5276	0.68	-1.0
145,405	+		GFF5276	0.68	-3.9
145,405	+		GFF5276	0.68	+1.9
145,406	-		GFF5276	0.68	-0.5
145,406	-		GFF5276	0.68	-4.7
145,673	-		GFF5276	0.86	-4.1
145,678	+		GFF5276	0.87	-3.0
145,679	-		GFF5276	0.87	-3.2
145,679	-		GFF5276	0.87	-4.5
146,043	+		GFF5277	0.22	+1.0
146,043	+		GFF5277	0.22	-1.7
146,043	+		GFF5277	0.22	-2.5
146,044	-		GFF5277	0.23	-0.4
146,044	-		GFF5277	0.23	-3.6
146,044	-		GFF5277	0.23	+2.4
146,044	-		GFF5277	0.23	+0.1
146,044	-		GFF5277	0.23	-0.1
146,337	+		GFF5277	0.60	-2.0
146,337	+		GFF5277	0.60	-0.9
146,337	+		GFF5277	0.60	-0.6
146,367	+		GFF5277	0.63	+0.2
146,367	+		GFF5277	0.63	+0.2
146,367	+		GFF5277	0.63	-0.5
146,367	+		GFF5277	0.63	+0.6
146,367	+		GFF5277	0.63	+0.7
146,368	-		GFF5277	0.64	+2.4
146,368	-		GFF5277	0.64	+0.3
146,368	-		GFF5277	0.64	+0.9
146,368	-		GFF5277	0.64	+0.9
146,368	-		GFF5277	0.64	-1.1
146,368	-		GFF5277	0.64	+0.1
146,407	+		GFF5277	0.69	-1.1
146,407	+		GFF5277	0.69	+1.9
146,408	-		GFF5277	0.69	-1.8
146,408	-		GFF5277	0.69	-1.6
146,604	+				-2.4
146,605	-				-1.1
146,698	+				-0.5
146,699	-				-2.2
146,699	-				-0.5
146,699	-				+0.3
146,699	-				+1.0