Strain Fitness in Variovorax sp. SCN45 around GFF4911

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
2,302	+		GFF4909	0.43	-0.6
2,352	+		GFF4909	0.50	-0.8
2,352	+		GFF4909	0.50	-1.6
2,352	+		GFF4909	0.50	-1.7
2,352	+		GFF4909	0.50	+0.6
2,353	-		GFF4909	0.50	+0.7
2,353	-		GFF4909	0.50	-2.5
2,391	+		GFF4909	0.56	-0.9
2,391	+		GFF4909	0.56	-2.0
2,391	+		GFF4909	0.56	-1.9
2,392	-		GFF4909	0.56	-1.1
2,392	-		GFF4909	0.56	+0.7
2,400	+		GFF4909	0.57	+1.2
2,400	+		GFF4909	0.57	+1.9
2,401	-		GFF4909	0.57	-2.0
2,460	+		GFF4909	0.65	+0.5
2,460	+		GFF4909	0.65	-0.1
2,460	+		GFF4909	0.65	+0.5
2,461	-		GFF4909	0.65	-2.1
2,461	-		GFF4909	0.65	-0.6
2,461	-		GFF4909	0.65	+1.7
2,640	+				+3.7
2,640	+				+0.8
2,640	+				-2.5
2,640	+				-1.1
2,640	+				+0.5
2,640	+				+0.5
2,640	+				+0.7
2,640	+				-0.0
2,640	+				+0.1
2,640	+				-1.0
2,640	+				+2.0
2,640	+				+0.7
2,640	+				-2.3
2,640	+				+2.7
2,640	+				+0.3
2,640	+				-2.1
2,640	+				-1.0
2,641	-				-0.2
2,641	-				+0.6
2,641	-				+1.4
2,641	-				-2.3
2,641	-				+1.0
2,641	-				+1.9
2,641	-				-1.5
2,641	-				-1.6
2,641	-				+0.8
2,641	-				-1.6
2,735	+				-1.1
2,736	-				-2.8
2,736	-				-0.3
2,760	+				-1.7
2,760	+				+0.1
2,761	-				+1.0
2,761	-				-1.3
3,088	+		GFF4910	0.71	-0.1
3,088	+		GFF4910	0.71	-2.6
3,088	+		GFF4910	0.71	-1.3
3,089	-		GFF4910	0.71	+1.7
3,089	-		GFF4910	0.71	-1.5
3,089	-		GFF4910	0.71	+0.8
3,089	-		GFF4910	0.71	-1.7
3,089	-		GFF4910	0.71	-0.6
3,089	-		GFF4910	0.71	+0.6
3,089	-		GFF4910	0.71	-0.5
3,089	-		GFF4910	0.71	-3.7
3,089	-		GFF4910	0.71	-0.1
3,089	-		GFF4910	0.71	+0.6
3,089	-		GFF4910	0.71	-0.7
3,089	-		GFF4910	0.71	+1.4
3,089	-		GFF4910	0.71	+1.6
3,089	-		GFF4910	0.71	-2.3
3,103	+		GFF4910	0.75	-1.1
3,103	+		GFF4910	0.75	+0.1
3,104	-		GFF4910	0.75	-0.3
3,104	-		GFF4910	0.75	-1.4
3,104	-		GFF4910	0.75	-2.6
3,179	+				-3.2
3,179	+				-1.0
3,179	+				-0.5
3,179	+				+0.9
3,179	+				-2.6
3,179	+				-1.1
3,180	-				-2.0
3,196	+				+3.3
3,197	-				-1.3
3,208	+				-0.4
3,208	+				+1.0
3,208	+				-2.6
3,208	+				-1.5
3,208	+				-1.6
3,208	+				+0.5
3,209	-				+3.2
3,209	-				+0.0
3,213	+				-1.9
3,213	+				+1.0
3,213	+				+0.1
3,213	+				+0.2
3,213	+				+0.1
3,213	+				-1.1
3,213	+				+0.0
3,213	+				-2.4
3,213	+				+0.3
3,213	+				-1.3
3,213	+				-1.3
3,213	+				+2.0
3,213	+				-0.1
3,214	-				+0.6
3,214	-				-1.7
3,214	-				+0.4
3,214	-				-2.6
3,214	-				-0.7
3,214	-				+1.1
3,214	-				+3.9
3,214	-				-3.1
3,214	-				+0.4
3,216	+				-1.5
3,216	+				+0.1
3,216	+				+0.3
3,216	+				-2.1
3,216	+				-2.0
3,216	+				-1.5
3,216	+				+0.6
3,216	+				-3.1
3,216	+				-2.0
3,216	+				-0.6
3,216	+				-1.2
3,216	+				+3.1
3,216	+				+3.7
3,216	+				-3.0
3,216	+				-2.5
3,216	+				+1.9
3,216	+				+1.4
3,216	+				-0.6
3,216	+				-0.2
3,217	-				-1.4
3,217	-				-0.4
3,217	-				+1.0
3,217	-				-1.7
3,217	-				+3.5
3,217	-				-2.0
3,217	-				-1.6
3,217	-				-1.0
3,217	-				-0.1
3,217	-				+1.4
3,217	-				+0.3
3,217	-				-0.1
3,217	-				-1.3
3,217	-				+1.0
3,217	-				+0.3
3,217	-				-1.7
3,217	-				-1.5
3,217	-				-1.1
3,217	-				+0.2
3,220	+				-1.9
3,221	-				+0.5
3,221	-				-1.0
3,460	+		GFF4911	0.45	+0.6
3,460	+		GFF4911	0.45	-1.0
3,460	+		GFF4911	0.45	+1.6
3,460	+		GFF4911	0.45	-1.9
3,460	+		GFF4911	0.45	-2.3
3,460	+		GFF4911	0.45	-1.3
3,460	+		GFF4911	0.45	-0.8
3,460	+		GFF4911	0.45	+0.0
3,460	+		GFF4911	0.45	-0.1
3,460	+		GFF4911	0.45	-2.0
3,460	-		GFF4911	0.45	-0.5
3,461	-		GFF4911	0.45	-1.5
3,461	-		GFF4911	0.45	+0.6
3,461	-		GFF4911	0.45	-1.0
3,461	-		GFF4911	0.45	-0.1
3,461	-		GFF4911	0.45	+1.0
3,461	-		GFF4911	0.45	+0.9
3,461	-		GFF4911	0.45	+2.7
3,461	-		GFF4911	0.45	+2.2
3,461	-		GFF4911	0.45	-3.8
3,461	-		GFF4911	0.45	-0.9
3,461	-		GFF4911	0.45	-0.3
3,461	-		GFF4911	0.45	-3.3
3,461	-		GFF4911	0.45	+1.7
3,461	-		GFF4911	0.45	-1.5
3,461	-		GFF4911	0.45	-2.0
3,508	+		GFF4911	0.54	-1.6
3,508	+		GFF4911	0.54	+0.4
3,508	+		GFF4911	0.54	-0.6
3,508	+		GFF4911	0.54	+0.7
3,508	+		GFF4911	0.54	-0.8
3,508	+		GFF4911	0.54	+0.6
3,508	+		GFF4911	0.54	+0.8
3,508	+		GFF4911	0.54	+0.2
3,508	+		GFF4911	0.54	+1.1
3,508	+		GFF4911	0.54	-0.8
3,508	+		GFF4911	0.54	-2.7
3,508	+		GFF4911	0.54	+0.2
3,508	+		GFF4911	0.54	+0.9
3,508	+		GFF4911	0.54	-1.4
3,508	+		GFF4911	0.54	-0.6
3,508	+		GFF4911	0.54	-0.4
3,508	+		GFF4911	0.54	-0.1
3,508	+		GFF4911	0.54	+0.7
3,508	+		GFF4911	0.54	+0.6
3,508	+		GFF4911	0.54	+0.3
3,508	+		GFF4911	0.54	-1.3
3,508	+		GFF4911	0.54	-1.4
3,508	+		GFF4911	0.54	-3.0
3,508	+		GFF4911	0.54	-2.0
3,508	+		GFF4911	0.54	-1.0
3,508	+		GFF4911	0.54	-4.0
3,508	+		GFF4911	0.54	-1.4
3,508	+		GFF4911	0.54	+1.5
3,508	+		GFF4911	0.54	-0.1
3,509	-		GFF4911	0.54	-1.3
3,509	-		GFF4911	0.54	+0.2
3,509	-		GFF4911	0.54	+0.5
3,509	-		GFF4911	0.54	-0.6
3,509	-		GFF4911	0.54	-0.7
3,509	-		GFF4911	0.54	-1.1
3,509	-		GFF4911	0.54	-1.7
3,509	-		GFF4911	0.54	-0.8
3,509	-		GFF4911	0.54	-1.0
3,509	-		GFF4911	0.54	-1.6
3,509	-		GFF4911	0.54	+0.7
3,509	-		GFF4911	0.54	-4.1
3,509	-		GFF4911	0.54	-2.3
3,644	+		GFF4911	0.82	+0.1
3,644	+		GFF4911	0.82	+0.3
3,644	+		GFF4911	0.82	-0.0
3,644	+		GFF4911	0.82	+0.7
3,645	-		GFF4911	0.82	-1.8
3,645	-		GFF4911	0.82	-1.6
3,645	-		GFF4911	0.82	-0.0
3,645	-		GFF4911	0.82	-0.3
3,645	-		GFF4911	0.82	-2.4
3,664	+		GFF4911	0.86	+1.2
3,664	+		GFF4911	0.86	-0.3
3,664	+		GFF4911	0.86	-3.3
3,664	+		GFF4911	0.86	+0.0
3,664	+		GFF4911	0.86	-3.8
3,665	-		GFF4911	0.86	+0.3
3,665	-		GFF4911	0.86	-2.6
3,683	-				-1.0
3,683	-				+0.1
3,718	+				+3.8
3,718	+				+1.4
3,719	-				-1.7