Experiment: Community=arabino-guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF749 and GFF750 are separated by 168 nucleotides GFF750 and GFF751 are separated by 6 nucleotides GFF751 and GFF752 are separated by 36 nucleotides GFF752 and GFF753 are separated by 130 nucleotides
GFF749 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 12,450 to 13,478
GFF749
GFF750 - Transcriptional regulator LigR, LysR family, at 13,647 to 14,924
GFF750
GFF751 - probable acetyltransferase protein, at 14,931 to 15,380
GFF751
GFF752 - hypothetical protein, at 15,417 to 15,758
GFF752
GFF753 - Methyl-accepting chemotaxis sensor/transducer protein, at 15,889 to 17,532
GFF753
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.694 kb on + strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.695 kb on - strand, within GFF749 at 12.790 kb on + strand, within GFF749 at 13.453 kb on + strand at 13.454 kb on - strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.560 kb on + strand at 13.561 kb on - strand at 14.208 kb on + strand, within GFF750 at 14.209 kb on - strand, within GFF750 at 14.209 kb on - strand, within GFF750 at 14.394 kb on + strand, within GFF750 at 14.395 kb on - strand, within GFF750 at 14.395 kb on - strand, within GFF750 at 14.996 kb on - strand, within GFF751 at 14.996 kb on - strand, within GFF751 at 14.996 kb on - strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.046 kb on + strand, within GFF751 at 15.047 kb on - strand, within GFF751 at 15.152 kb on - strand, within GFF751 at 15.236 kb on - strand, within GFF751 at 15.248 kb on + strand, within GFF751 at 15.248 kb on + strand, within GFF751 at 15.249 kb on - strand, within GFF751 at 15.328 kb on + strand, within GFF751 at 15.329 kb on - strand, within GFF751 at 15.329 kb on - strand, within GFF751 at 15.372 kb on + strand at 15.372 kb on + strand at 15.372 kb on + strand at 15.372 kb on + strand at 15.373 kb on - strand at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.536 kb on + strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.537 kb on - strand, within GFF752 at 15.623 kb on - strand, within GFF752 at 15.677 kb on - strand, within GFF752
Per-strain Table
Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4 remove 12,694 + GFF749 0.24 +1.0 12,695 - GFF749 0.24 -1.2 12,695 - GFF749 0.24 -1.5 12,695 - GFF749 0.24 -0.5 12,790 + GFF749 0.33 -0.3 13,453 + +0.5 13,454 - -0.2 13,560 + -1.2 13,560 + -0.1 13,560 + +0.7 13,560 + -1.2 13,561 - -0.3 14,208 + GFF750 0.44 -2.2 14,209 - GFF750 0.44 +0.2 14,209 - GFF750 0.44 -1.5 14,394 + GFF750 0.58 +0.7 14,395 - GFF750 0.59 -2.2 14,395 - GFF750 0.59 -1.4 14,996 - GFF751 0.14 -2.1 14,996 - GFF751 0.14 +1.0 14,996 - GFF751 0.14 -0.2 15,046 + GFF751 0.26 -1.4 15,046 + GFF751 0.26 +0.7 15,046 + GFF751 0.26 +0.1 15,047 - GFF751 0.26 +0.6 15,152 - GFF751 0.49 +0.3 15,236 - GFF751 0.68 -0.5 15,248 + GFF751 0.70 +1.6 15,248 + GFF751 0.70 +0.8 15,249 - GFF751 0.71 -0.7 15,328 + GFF751 0.88 -1.1 15,329 - GFF751 0.88 -0.9 15,329 - GFF751 0.88 -1.3 15,372 + -0.2 15,372 + -0.7 15,372 + +2.0 15,372 + +0.4 15,373 - -0.4 15,536 + GFF752 0.35 -2.5 15,536 + GFF752 0.35 -1.1 15,536 + GFF752 0.35 -0.2 15,536 + GFF752 0.35 -1.7 15,536 + GFF752 0.35 -1.5 15,537 - GFF752 0.35 -0.5 15,537 - GFF752 0.35 +0.8 15,537 - GFF752 0.35 +0.1 15,537 - GFF752 0.35 -2.8 15,537 - GFF752 0.35 +0.2 15,623 - GFF752 0.60 -1.0 15,677 - GFF752 0.76 +0.8
Or see this region's nucleotide sequence