Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF986 and GFF987 are separated by 40 nucleotides GFF987 and GFF988 are separated by 50 nucleotides GFF988 and GFF989 are separated by 130 nucleotides GFF989 and GFF990 overlap by 4 nucleotides
GFF986 - DinG family ATP-dependent helicase YoaA, at 303,615 to 305,705
GFF986
GFF987 - Outer membrane beta-barrel assembly protein BamD, at 305,746 to 306,552
GFF987
GFF988 - LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23), at 306,603 to 307,601
GFF988
GFF989 - Segregation and condensation protein B, at 307,732 to 308,598
GFF989
GFF990 - LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22), at 308,595 to 310,394
GFF990
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 305.613 kb on + strand at 305.613 kb on + strand at 305.613 kb on + strand at 305.613 kb on + strand at 305.613 kb on + strand at 305.614 kb on - strand at 305.614 kb on - strand at 305.703 kb on + strand at 305.703 kb on + strand at 305.703 kb on + strand at 305.704 kb on - strand at 305.747 kb on + strand at 305.748 kb on - strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.798 kb on + strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.799 kb on - strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.813 kb on + strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 305.814 kb on - strand at 306.558 kb on - strand at 306.558 kb on - strand at 306.578 kb on - strand at 306.578 kb on - strand at 306.578 kb on - strand at 306.588 kb on - strand at 306.588 kb on - strand at 306.588 kb on - strand at 306.588 kb on - strand at 306.589 kb on + strand at 306.612 kb on - strand at 306.612 kb on - strand at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.762 kb on + strand, within GFF988 at 306.763 kb on - strand, within GFF988 at 306.763 kb on - strand, within GFF988 at 306.763 kb on - strand, within GFF988 at 306.809 kb on + strand, within GFF988 at 306.809 kb on + strand, within GFF988 at 306.809 kb on + strand, within GFF988 at 306.809 kb on + strand, within GFF988 at 306.810 kb on - strand, within GFF988 at 306.810 kb on - strand, within GFF988 at 306.810 kb on - strand, within GFF988 at 306.924 kb on + strand, within GFF988 at 306.924 kb on + strand, within GFF988 at 306.925 kb on - strand, within GFF988 at 306.925 kb on - strand, within GFF988 at 306.925 kb on - strand, within GFF988 at 306.925 kb on - strand, within GFF988 at 307.173 kb on + strand, within GFF988 at 307.173 kb on + strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.174 kb on - strand, within GFF988 at 307.438 kb on - strand, within GFF988 at 307.587 kb on + strand at 307.588 kb on - strand at 307.588 kb on - strand at 307.588 kb on - strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.670 kb on + strand at 307.671 kb on - strand at 307.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 305,613 + -0.1 305,613 + -0.1 305,613 + -1.0 305,613 + -0.1 305,613 + -0.6 305,614 - -0.5 305,614 - +0.8 305,703 + -0.4 305,703 + -0.2 305,703 + -2.0 305,704 - -1.1 305,747 + +0.2 305,748 - -0.3 305,798 + -0.1 305,798 + -0.1 305,798 + +1.4 305,798 + -1.0 305,798 + -0.2 305,798 + -0.2 305,798 + -0.3 305,798 + -0.9 305,798 + +1.0 305,798 + +0.4 305,798 + +0.3 305,799 - -0.6 305,799 - +0.4 305,799 - -0.8 305,799 - -1.1 305,799 - -0.1 305,799 - -1.1 305,799 - +1.4 305,799 - -0.6 305,799 - +0.4 305,799 - -1.0 305,799 - -0.4 305,799 - +0.8 305,799 - +2.4 305,799 - -0.6 305,799 - -0.2 305,799 - -1.8 305,799 - -0.6 305,813 + +1.4 305,813 + -1.4 305,813 + +0.1 305,813 + -0.6 305,813 + +2.4 305,813 + +1.8 305,813 + -0.8 305,814 - +0.4 305,814 - -0.1 305,814 - -0.7 305,814 - +0.0 305,814 - +1.4 305,814 - -1.0 305,814 - -0.9 305,814 - +0.1 305,814 - -0.2 305,814 - -0.9 305,814 - -0.4 306,558 - -1.4 306,558 - +0.1 306,578 - +0.5 306,578 - +1.1 306,578 - -0.5 306,588 - +0.4 306,588 - +0.4 306,588 - +0.0 306,588 - -0.5 306,589 + -0.7 306,612 - +0.8 306,612 - +1.4 306,762 + GFF988 0.16 +0.8 306,762 + GFF988 0.16 -1.3 306,762 + GFF988 0.16 -0.2 306,762 + GFF988 0.16 -1.6 306,762 + GFF988 0.16 -1.8 306,762 + GFF988 0.16 -0.5 306,762 + GFF988 0.16 -1.1 306,762 + GFF988 0.16 -0.1 306,762 + GFF988 0.16 -1.5 306,763 - GFF988 0.16 -0.8 306,763 - GFF988 0.16 -1.8 306,763 - GFF988 0.16 -0.6 306,809 + GFF988 0.21 -0.7 306,809 + GFF988 0.21 -0.1 306,809 + GFF988 0.21 -0.4 306,809 + GFF988 0.21 -1.0 306,810 - GFF988 0.21 -3.3 306,810 - GFF988 0.21 -0.4 306,810 - GFF988 0.21 -1.6 306,924 + GFF988 0.32 -1.1 306,924 + GFF988 0.32 -1.7 306,925 - GFF988 0.32 +0.0 306,925 - GFF988 0.32 +0.5 306,925 - GFF988 0.32 +0.1 306,925 - GFF988 0.32 +0.5 307,173 + GFF988 0.57 -1.8 307,173 + GFF988 0.57 -1.2 307,174 - GFF988 0.57 +0.9 307,174 - GFF988 0.57 +1.4 307,174 - GFF988 0.57 -0.8 307,174 - GFF988 0.57 -0.4 307,174 - GFF988 0.57 -1.5 307,174 - GFF988 0.57 -0.1 307,174 - GFF988 0.57 +0.0 307,438 - GFF988 0.84 -0.3 307,587 + +0.7 307,588 - -0.6 307,588 - +0.4 307,588 - +0.4 307,670 + -0.3 307,670 + +0.2 307,670 + -0.6 307,670 + +0.4 307,670 + +0.3 307,670 + +1.4 307,670 + -0.3 307,670 + +0.0 307,670 + -0.1 307,670 + -0.9 307,671 - +0.4 307,671 - +1.4
Or see this region's nucleotide sequence