Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4304 and GFF4305 are separated by 232 nucleotides GFF4305 and GFF4306 overlap by 4 nucleotides GFF4306 and GFF4307 are separated by 1 nucleotides
GFF4304 - Cyclohexanecarboxylate--CoA ligase, at 223,480 to 225,141
GFF4304
GFF4305 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 225,374 to 226,198
GFF4305
GFF4306 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 226,195 to 227,067
GFF4306
GFF4307 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 227,069 to 228,109
GFF4307
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1 at 224.698 kb on + strand, within GFF4304 at 224.723 kb on - strand, within GFF4304 at 224.761 kb on + strand, within GFF4304 at 224.779 kb on + strand, within GFF4304 at 224.990 kb on - strand at 224.990 kb on - strand at 224.990 kb on - strand at 225.019 kb on + strand at 225.250 kb on - strand at 225.768 kb on - strand, within GFF4305 at 226.342 kb on + strand, within GFF4306 at 226.343 kb on - strand, within GFF4306 at 226.343 kb on - strand, within GFF4306 at 226.343 kb on - strand, within GFF4306 at 226.345 kb on + strand, within GFF4306 at 226.753 kb on + strand, within GFF4306 at 226.961 kb on - strand, within GFF4306 at 227.195 kb on + strand, within GFF4307
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 224,698 + GFF4304 0.73 -1.3 224,723 - GFF4304 0.75 -0.7 224,761 + GFF4304 0.77 -1.6 224,779 + GFF4304 0.78 +0.0 224,990 - -0.4 224,990 - -1.1 224,990 - +0.6 225,019 + -0.7 225,250 - -1.2 225,768 - GFF4305 0.48 -0.9 226,342 + GFF4306 0.17 +0.6 226,343 - GFF4306 0.17 -0.2 226,343 - GFF4306 0.17 +0.2 226,343 - GFF4306 0.17 +0.2 226,345 + GFF4306 0.17 -0.7 226,753 + GFF4306 0.64 +0.2 226,961 - GFF4306 0.88 +0.6 227,195 + GFF4307 0.12 -0.8
Or see this region's nucleotide sequence