Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3703 and GFF3704 are separated by 45 nucleotides GFF3704 and GFF3705 are separated by 22 nucleotides GFF3705 and GFF3706 overlap by 4 nucleotides GFF3706 and GFF3707 overlap by 4 nucleotides
GFF3703 - LemA family protein, at 203,660 to 204,259
GFF3703
GFF3704 - FIG00536957: hypothetical protein, at 204,305 to 205,063
GFF3704
GFF3705 - Amidases related to nicotinamidase, at 205,086 to 205,760
GFF3705
GFF3706 - ABC transporter, permease protein 2 (cluster 11, riboflavin/purine nucleoside/unknown), at 205,757 to 206,689
GFF3706
GFF3707 - ABC transporter, permease protein 1 (cluster 11, riboflavin/purine nucleoside/unknown), at 206,686 to 207,807
GFF3707
Position (kb) 205
206 Strain fitness (log2 ratio) -2
-1
0
1 at 204.136 kb on - strand, within GFF3703 at 204.198 kb on + strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.199 kb on - strand, within GFF3703 at 204.266 kb on + strand at 204.266 kb on + strand at 204.267 kb on - strand at 204.267 kb on - strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.290 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.295 kb on + strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.296 kb on - strand at 204.599 kb on + strand, within GFF3704 at 204.600 kb on - strand, within GFF3704 at 205.336 kb on + strand, within GFF3705 at 205.703 kb on - strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.779 kb on + strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.780 kb on - strand at 205.863 kb on + strand, within GFF3706 at 205.884 kb on + strand, within GFF3706 at 205.885 kb on - strand, within GFF3706 at 206.070 kb on + strand, within GFF3706 at 206.070 kb on + strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.071 kb on - strand, within GFF3706 at 206.657 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 204,136 - GFF3703 0.79 -1.3 204,198 + GFF3703 0.90 +0.5 204,199 - GFF3703 0.90 +0.5 204,199 - GFF3703 0.90 +0.4 204,266 + -0.3 204,266 + +0.2 204,267 - +0.4 204,267 - -1.7 204,290 + +1.1 204,290 + -2.2 204,290 + -1.6 204,290 + -0.7 204,290 + -0.8 204,295 + +0.2 204,295 + +0.2 204,295 + -0.1 204,295 + +0.3 204,295 + +0.3 204,295 + +0.3 204,295 + -0.3 204,295 + -1.2 204,295 + -0.0 204,296 - +0.3 204,296 - -0.5 204,296 - +0.2 204,296 - -0.4 204,296 - -0.6 204,296 - -0.0 204,296 - -0.8 204,296 - +0.2 204,296 - -0.1 204,296 - -0.3 204,296 - +0.1 204,296 - +0.5 204,296 - -1.7 204,296 - -0.8 204,296 - +0.2 204,599 + GFF3704 0.39 +0.0 204,600 - GFF3704 0.39 -1.7 205,336 + GFF3705 0.37 -0.8 205,703 - +0.1 205,779 + -0.6 205,779 + -1.7 205,779 + -1.4 205,779 + +0.6 205,779 + -0.2 205,780 - -0.2 205,780 - +0.3 205,780 - -0.9 205,780 - -0.3 205,780 - +0.4 205,863 + GFF3706 0.11 +1.4 205,884 + GFF3706 0.14 -0.1 205,885 - GFF3706 0.14 -0.2 206,070 + GFF3706 0.34 -0.3 206,070 + GFF3706 0.34 -0.2 206,071 - GFF3706 0.34 +0.3 206,071 - GFF3706 0.34 -0.1 206,071 - GFF3706 0.34 -0.5 206,071 - GFF3706 0.34 -0.3 206,071 - GFF3706 0.34 -1.8 206,071 - GFF3706 0.34 +1.2 206,657 - -0.2
Or see this region's nucleotide sequence