Strain Fitness in Variovorax sp. SCN45 around GFF2631

Experiment: Community=Kojac gum; Passage=1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2629 and GFF2630 are separated by 101 nucleotidesGFF2630 and GFF2631 are separated by 59 nucleotidesGFF2631 and GFF2632 are separated by 32 nucleotidesGFF2632 and GFF2633 are separated by 149 nucleotides GFF2629 - hypothetical protein, at 41,814 to 42,896 GFF2629 GFF2630 - Ligand-binding SRPBCC domain protein family, at 42,998 to 43,288 GFF2630 GFF2631 - Transcriptional regulator, ArsR family, at 43,348 to 43,809 GFF2631 GFF2632 - no description, at 43,842 to 44,387 GFF2632 GFF2633 - Proline iminopeptidase (EC 3.4.11.5), at 44,537 to 45,490 GFF2633 Position (kb) 43 44Strain fitness (log2 ratio) -2 -1 0 1 2 3at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.353 kb on + strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.354 kb on - strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.459 kb on + strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.460 kb on - strand, within GFF2629at 42.466 kb on - strand, within GFF2629at 42.489 kb on + strand, within GFF2629at 42.521 kb on - strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.550 kb on + strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.551 kb on - strand, within GFF2629at 42.587 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.655 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.735 kb on + strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.736 kb on - strand, within GFF2629at 42.930 kb on + strandat 42.930 kb on + strandat 42.930 kb on + strandat 42.931 kb on - strandat 42.976 kb on + strandat 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.221 kb on + strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.222 kb on - strand, within GFF2630at 43.456 kb on + strand, within GFF2631at 43.456 kb on + strand, within GFF2631at 43.457 kb on - strand, within GFF2631at 43.481 kb on + strand, within GFF2631at 43.820 kb on - strandat 43.909 kb on + strand, within GFF2632at 43.909 kb on + strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 43.910 kb on - strand, within GFF2632at 44.101 kb on + strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.102 kb on - strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.323 kb on + strand, within GFF2632at 44.324 kb on - strand, within GFF2632at 44.324 kb on - strand, within GFF2632at 44.336 kb on - strandat 44.336 kb on - strandat 44.345 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.488 kb on - strandat 44.559 kb on - strandat 44.559 kb on - strandat 44.576 kb on + strandat 44.576 kb on + strandat 44.576 kb on + strandat 44.577 kb on - strandat 44.621 kb on + strandat 44.622 kb on - strandat 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.702 kb on - strand, within GFF2633at 44.726 kb on + strand, within GFF2633

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1
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42,353 + GFF2629 0.50 +0.1
42,353 + GFF2629 0.50 -0.4
42,353 + GFF2629 0.50 +0.3
42,353 + GFF2629 0.50 -1.1
42,353 + GFF2629 0.50 -0.1
42,353 + GFF2629 0.50 -0.5
42,354 - GFF2629 0.50 -0.3
42,354 - GFF2629 0.50 -0.7
42,354 - GFF2629 0.50 +0.4
42,459 + GFF2629 0.60 +0.1
42,459 + GFF2629 0.60 +0.2
42,460 - GFF2629 0.60 -1.9
42,460 - GFF2629 0.60 -1.0
42,460 - GFF2629 0.60 -1.7
42,466 - GFF2629 0.60 -1.0
42,489 + GFF2629 0.62 -0.3
42,521 - GFF2629 0.65 -0.5
42,550 + GFF2629 0.68 -0.7
42,550 + GFF2629 0.68 -0.6
42,550 + GFF2629 0.68 +0.3
42,550 + GFF2629 0.68 -0.5
42,550 + GFF2629 0.68 +0.4
42,550 + GFF2629 0.68 +0.3
42,550 + GFF2629 0.68 +0.8
42,551 - GFF2629 0.68 +0.5
42,551 - GFF2629 0.68 -1.1
42,551 - GFF2629 0.68 +1.1
42,551 - GFF2629 0.68 -0.4
42,551 - GFF2629 0.68 +0.5
42,587 + GFF2629 0.71 -0.6
42,655 + GFF2629 0.78 -0.3
42,655 + GFF2629 0.78 -0.1
42,735 + GFF2629 0.85 -0.3
42,735 + GFF2629 0.85 -0.5
42,735 + GFF2629 0.85 -0.5
42,736 - GFF2629 0.85 -1.6
42,736 - GFF2629 0.85 -0.1
42,736 - GFF2629 0.85 -2.2
42,736 - GFF2629 0.85 -0.3
42,736 - GFF2629 0.85 -2.1
42,736 - GFF2629 0.85 -1.0
42,736 - GFF2629 0.85 -0.5
42,736 - GFF2629 0.85 -1.1
42,930 + +0.0
42,930 + -0.3
42,930 + -0.2
42,931 - -0.0
42,976 + +0.2
43,221 + GFF2630 0.77 -0.4
43,221 + GFF2630 0.77 -0.6
43,221 + GFF2630 0.77 +0.4
43,221 + GFF2630 0.77 +0.5
43,221 + GFF2630 0.77 +1.2
43,222 - GFF2630 0.77 +2.2
43,222 - GFF2630 0.77 +1.7
43,222 - GFF2630 0.77 +0.3
43,456 + GFF2631 0.23 -0.5
43,456 + GFF2631 0.23 -1.6
43,457 - GFF2631 0.24 -1.0
43,481 + GFF2631 0.29 +1.5
43,820 - -0.2
43,909 + GFF2632 0.12 +0.1
43,909 + GFF2632 0.12 +0.9
43,910 - GFF2632 0.12 -0.8
43,910 - GFF2632 0.12 -0.5
43,910 - GFF2632 0.12 -0.9
43,910 - GFF2632 0.12 -1.3
43,910 - GFF2632 0.12 -1.8
44,101 + GFF2632 0.47 +0.1
44,102 - GFF2632 0.48 -0.4
44,102 - GFF2632 0.48 -1.1
44,102 - GFF2632 0.48 -0.3
44,102 - GFF2632 0.48 -0.5
44,102 - GFF2632 0.48 +0.7
44,102 - GFF2632 0.48 -0.4
44,102 - GFF2632 0.48 +0.1
44,102 - GFF2632 0.48 +0.5
44,323 + GFF2632 0.88 +0.2
44,323 + GFF2632 0.88 -0.6
44,323 + GFF2632 0.88 -0.2
44,324 - GFF2632 0.88 +2.5
44,324 - GFF2632 0.88 +1.5
44,336 - +0.1
44,336 - +0.7
44,345 + -0.8
44,487 + -1.1
44,487 + -0.1
44,487 + -1.3
44,487 + -0.5
44,487 + -1.1
44,487 + +0.5
44,488 - -1.5
44,488 - -0.2
44,488 - -1.8
44,488 - +2.8
44,488 - +0.8
44,488 - +0.3
44,559 - -1.2
44,559 - -1.3
44,576 + -0.1
44,576 + -1.7
44,576 + -0.5
44,577 - -0.6
44,621 + +0.8
44,622 - +0.0
44,702 - GFF2633 0.17 -1.0
44,702 - GFF2633 0.17 +0.6
44,702 - GFF2633 0.17 +0.5
44,702 - GFF2633 0.17 +0.2
44,702 - GFF2633 0.17 -0.6
44,726 + GFF2633 0.20 +0.5

Or see this region's nucleotide sequence