Experiment: Community=Kojac gum; Passage=1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2341 and GFF2342 overlap by 4 nucleotides GFF2342 and GFF2343 are separated by 5 nucleotides GFF2343 and GFF2344 overlap by 4 nucleotides
GFF2341 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 392,860 to 393,690
GFF2341
GFF2342 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 393,687 to 394,676
GFF2342
GFF2343 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 394,682 to 395,557
GFF2343
GFF2344 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 395,554 to 396,504
GFF2344
Position (kb) 394
395
396 Strain fitness (log2 ratio) -2
-1
0
1 at 393.802 kb on + strand, within GFF2342 at 393.802 kb on + strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.803 kb on - strand, within GFF2342 at 393.934 kb on + strand, within GFF2342 at 393.935 kb on - strand, within GFF2342 at 393.997 kb on + strand, within GFF2342 at 393.998 kb on - strand, within GFF2342 at 394.609 kb on - strand at 394.683 kb on + strand at 394.683 kb on + strand at 394.684 kb on - strand at 394.684 kb on - strand at 395.250 kb on - strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.334 kb on + strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.335 kb on - strand, within GFF2343 at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.558 kb on - strand at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 395.720 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.263 kb on + strand, within GFF2344 at 396.490 kb on + strand at 396.491 kb on - strand at 396.521 kb on + strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand at 396.522 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Kojac gum; Passage=1 remove 393,802 + GFF2342 0.12 +0.2 393,802 + GFF2342 0.12 +0.2 393,803 - GFF2342 0.12 -2.1 393,803 - GFF2342 0.12 -0.6 393,803 - GFF2342 0.12 -0.4 393,803 - GFF2342 0.12 -0.3 393,803 - GFF2342 0.12 -0.3 393,934 + GFF2342 0.25 -0.2 393,935 - GFF2342 0.25 +0.8 393,997 + GFF2342 0.31 -0.8 393,998 - GFF2342 0.31 +0.3 394,609 - -1.5 394,683 + -1.6 394,683 + -0.8 394,684 - -0.0 394,684 - -1.9 395,250 - GFF2343 0.65 +1.7 395,334 + GFF2343 0.74 -1.4 395,334 + GFF2343 0.74 -1.3 395,335 - GFF2343 0.75 -1.0 395,335 - GFF2343 0.75 -0.7 395,558 - -0.5 395,558 - +0.1 395,558 - -1.6 395,558 - +0.4 395,558 - +1.0 395,558 - -0.4 395,720 + GFF2344 0.17 +0.0 395,720 + GFF2344 0.17 -1.3 395,720 + GFF2344 0.17 -1.2 396,263 + GFF2344 0.75 +0.1 396,263 + GFF2344 0.75 -0.9 396,490 + +0.1 396,491 - -0.9 396,521 + +0.4 396,522 - +0.3 396,522 - +0.7 396,522 - -0.5 396,522 - -1.2 396,522 - -0.1 396,522 - -0.3
Or see this region's nucleotide sequence