Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03810 and HMPREF1078_RS19515 overlap by 4 nucleotides HMPREF1078_RS19515 and HMPREF1078_RS18435 are separated by 436 nucleotides HMPREF1078_RS18435 and HMPREF1078_RS03820 are separated by 12 nucleotides
HMPREF1078_RS03810: HMPREF1078_RS03810 - amidoligase family protein, at 893,304 to 894,233
_RS03810
HMPREF1078_RS19515: HMPREF1078_RS19515 - hypothetical protein, at 894,230 to 894,463
_RS19515
HMPREF1078_RS18435: HMPREF1078_RS18435 - DNA-binding protein, at 894,900 to 895,055
_RS18435
HMPREF1078_RS03820: HMPREF1078_RS03820 - helix-turn-helix domain-containing protein, at 895,068 to 895,361
_RS03820
Position (kb) 894
895 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 893.268 kb on - strand at 893.275 kb on + strand at 893.276 kb on - strand at 893.281 kb on - strand at 893.281 kb on - strand at 893.281 kb on - strand at 893.295 kb on + strand at 893.295 kb on + strand at 893.295 kb on + strand at 893.354 kb on + strand at 893.355 kb on - strand at 893.424 kb on + strand, within HMPREF1078_RS03810 at 893.547 kb on + strand, within HMPREF1078_RS03810 at 893.624 kb on + strand, within HMPREF1078_RS03810 at 893.625 kb on - strand, within HMPREF1078_RS03810 at 893.625 kb on - strand, within HMPREF1078_RS03810 at 893.665 kb on + strand, within HMPREF1078_RS03810 at 893.797 kb on + strand, within HMPREF1078_RS03810 at 893.797 kb on + strand, within HMPREF1078_RS03810 at 893.798 kb on - strand, within HMPREF1078_RS03810 at 893.798 kb on - strand, within HMPREF1078_RS03810 at 893.803 kb on + strand, within HMPREF1078_RS03810 at 893.907 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.911 kb on - strand, within HMPREF1078_RS03810 at 893.913 kb on + strand, within HMPREF1078_RS03810 at 893.914 kb on - strand, within HMPREF1078_RS03810 at 893.935 kb on + strand, within HMPREF1078_RS03810 at 893.936 kb on - strand, within HMPREF1078_RS03810 at 893.936 kb on - strand, within HMPREF1078_RS03810 at 894.024 kb on + strand, within HMPREF1078_RS03810 at 894.024 kb on + strand, within HMPREF1078_RS03810 at 894.110 kb on + strand, within HMPREF1078_RS03810 at 894.196 kb on + strand at 894.196 kb on + strand at 894.197 kb on - strand at 894.197 kb on - strand at 894.198 kb on + strand at 894.199 kb on - strand at 894.201 kb on + strand at 894.201 kb on + strand at 894.209 kb on - strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.241 kb on + strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.242 kb on - strand at 894.245 kb on + strand at 894.245 kb on + strand at 894.246 kb on - strand at 894.246 kb on - strand at 894.246 kb on - strand at 894.247 kb on + strand at 894.247 kb on + strand at 894.248 kb on - strand at 894.351 kb on - strand, within HMPREF1078_RS19515 at 894.351 kb on - strand, within HMPREF1078_RS19515 at 894.449 kb on + strand at 894.450 kb on - strand at 894.479 kb on - strand at 894.485 kb on - strand at 894.639 kb on - strand at 894.649 kb on - strand at 894.739 kb on + strand at 894.816 kb on + strand at 894.817 kb on - strand at 894.817 kb on - strand at 894.817 kb on - strand at 894.834 kb on - strand at 894.958 kb on - strand, within HMPREF1078_RS18435 at 894.994 kb on - strand, within HMPREF1078_RS18435 at 895.276 kb on - strand, within HMPREF1078_RS03820 at 895.303 kb on - strand, within HMPREF1078_RS03820 at 895.341 kb on + strand at 895.357 kb on + strand at 895.359 kb on + strand at 895.359 kb on + strand at 895.360 kb on - strand at 895.363 kb on - strand at 895.432 kb on - strand at 895.444 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 893,268 - +0.0 893,275 + +0.8 893,276 - -2.7 893,281 - -1.7 893,281 - +2.0 893,281 - -0.2 893,295 + +0.0 893,295 + +0.4 893,295 + +1.4 893,354 + -0.2 893,355 - +1.0 893,424 + HMPREF1078_RS03810 0.13 +0.4 893,547 + HMPREF1078_RS03810 0.26 -1.0 893,624 + HMPREF1078_RS03810 0.34 -0.2 893,625 - HMPREF1078_RS03810 0.35 -1.1 893,625 - HMPREF1078_RS03810 0.35 +0.0 893,665 + HMPREF1078_RS03810 0.39 -0.2 893,797 + HMPREF1078_RS03810 0.53 -0.2 893,797 + HMPREF1078_RS03810 0.53 -1.1 893,798 - HMPREF1078_RS03810 0.53 -1.1 893,798 - HMPREF1078_RS03810 0.53 -1.5 893,803 + HMPREF1078_RS03810 0.54 +0.9 893,907 - HMPREF1078_RS03810 0.65 -0.2 893,911 - HMPREF1078_RS03810 0.65 -1.1 893,911 - HMPREF1078_RS03810 0.65 -1.0 893,911 - HMPREF1078_RS03810 0.65 -1.0 893,913 + HMPREF1078_RS03810 0.65 -2.2 893,914 - HMPREF1078_RS03810 0.66 -1.3 893,935 + HMPREF1078_RS03810 0.68 -1.1 893,936 - HMPREF1078_RS03810 0.68 +0.7 893,936 - HMPREF1078_RS03810 0.68 +2.4 894,024 + HMPREF1078_RS03810 0.77 -1.8 894,024 + HMPREF1078_RS03810 0.77 +0.8 894,110 + HMPREF1078_RS03810 0.87 -0.6 894,196 + -2.7 894,196 + -0.4 894,197 - +0.8 894,197 - +3.4 894,198 + +0.8 894,199 - +0.9 894,201 + +2.0 894,201 + +0.4 894,209 - -1.9 894,241 + +0.4 894,241 + -0.4 894,241 + +0.9 894,241 + +0.2 894,241 + -0.2 894,241 + +0.4 894,242 - -0.6 894,242 - -0.2 894,242 - -0.4 894,242 - -2.2 894,242 - +2.4 894,242 - -0.6 894,245 + +0.0 894,245 + -1.4 894,246 - +1.2 894,246 - -2.3 894,246 - -3.3 894,247 + -0.4 894,247 + +1.8 894,248 - +2.4 894,351 - HMPREF1078_RS19515 0.52 -1.6 894,351 - HMPREF1078_RS19515 0.52 -0.4 894,449 + -1.0 894,450 - -1.7 894,479 - +1.0 894,485 - +0.2 894,639 - +0.0 894,649 - -0.2 894,739 + -0.8 894,816 + +0.0 894,817 - -0.4 894,817 - -0.5 894,817 - -1.0 894,834 - +1.5 894,958 - HMPREF1078_RS18435 0.37 -1.0 894,994 - HMPREF1078_RS18435 0.60 -1.8 895,276 - HMPREF1078_RS03820 0.71 -0.0 895,303 - HMPREF1078_RS03820 0.80 -0.2 895,341 + +1.4 895,357 + +1.4 895,359 + +1.4 895,359 + -0.6 895,360 - -2.0 895,363 - +1.0 895,432 - +1.1 895,444 + -0.4
Or see this region's nucleotide sequence