Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17430 and HMPREF1078_RS17435 are separated by 343 nucleotides HMPREF1078_RS17435 and HMPREF1078_RS17440 are separated by 386 nucleotides HMPREF1078_RS17440 and HMPREF1078_RS17445 are separated by 16 nucleotides
HMPREF1078_RS17430: HMPREF1078_RS17430 - hypothetical protein, at 39,724 to 40,863
_RS17430
HMPREF1078_RS17435: HMPREF1078_RS17435 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 41,207 to 42,520
_RS17435
HMPREF1078_RS17440: HMPREF1078_RS17440 - hypothetical protein, at 42,907 to 43,134
_RS17440
HMPREF1078_RS17445: HMPREF1078_RS17445 - lipopolysaccharide biosynthesis protein, at 43,151 to 44,596
_RS17445
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 40.970 kb on + strand at 41.014 kb on + strand at 41.036 kb on - strand at 41.043 kb on + strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.063 kb on - strand at 41.177 kb on + strand at 41.178 kb on - strand at 41.184 kb on - strand at 41.191 kb on - strand at 41.191 kb on - strand at 41.200 kb on + strand at 41.201 kb on - strand at 41.214 kb on + strand at 41.218 kb on + strand at 41.218 kb on + strand at 41.218 kb on + strand at 41.234 kb on + strand at 41.234 kb on + strand at 41.234 kb on + strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.333 kb on - strand at 41.333 kb on - strand at 41.333 kb on - strand at 41.341 kb on + strand, within HMPREF1078_RS17435 at 41.342 kb on - strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.346 kb on - strand, within HMPREF1078_RS17435 at 41.461 kb on + strand, within HMPREF1078_RS17435 at 41.461 kb on + strand, within HMPREF1078_RS17435 at 41.483 kb on - strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.519 kb on - strand, within HMPREF1078_RS17435 at 41.590 kb on + strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.769 kb on - strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.816 kb on - strand, within HMPREF1078_RS17435 at 41.837 kb on + strand, within HMPREF1078_RS17435 at 41.838 kb on - strand, within HMPREF1078_RS17435 at 41.838 kb on - strand, within HMPREF1078_RS17435 at 41.875 kb on + strand, within HMPREF1078_RS17435 at 41.875 kb on + strand, within HMPREF1078_RS17435 at 41.923 kb on + strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.975 kb on + strand, within HMPREF1078_RS17435 at 41.976 kb on - strand, within HMPREF1078_RS17435 at 42.016 kb on + strand, within HMPREF1078_RS17435 at 42.017 kb on - strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.070 kb on - strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.155 kb on - strand, within HMPREF1078_RS17435 at 42.160 kb on + strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.289 kb on - strand, within HMPREF1078_RS17435 at 42.324 kb on - strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.349 kb on - strand, within HMPREF1078_RS17435 at 42.464 kb on + strand at 42.465 kb on - strand at 42.465 kb on - strand at 42.511 kb on - strand at 42.518 kb on + strand at 42.518 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.523 kb on - strand at 42.555 kb on + strand at 42.558 kb on + strand at 42.558 kb on + strand at 42.569 kb on + strand at 42.601 kb on + strand at 42.601 kb on + strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.603 kb on + strand at 42.604 kb on - strand at 42.632 kb on + strand at 42.636 kb on + strand at 42.636 kb on + strand at 42.636 kb on + strand at 42.637 kb on - strand at 42.637 kb on - strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.664 kb on - strand at 42.678 kb on + strand at 42.678 kb on + strand at 42.689 kb on + strand at 42.689 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.733 kb on - strand at 42.733 kb on - strand at 42.733 kb on - strand at 42.734 kb on + strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.754 kb on - strand at 42.764 kb on - strand at 42.764 kb on - strand at 42.822 kb on + strand at 42.823 kb on - strand at 42.825 kb on + strand at 42.826 kb on - strand at 42.826 kb on - strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.830 kb on - strand at 42.830 kb on - strand at 42.854 kb on - strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.923 kb on + strand at 42.927 kb on - strand at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.983 kb on - strand, within HMPREF1078_RS17440 at 42.996 kb on + strand, within HMPREF1078_RS17440 at 43.000 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.063 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.120 kb on - strand at 43.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 40,970 + +0.7 41,014 + -0.0 41,036 - -1.7 41,043 + -0.0 41,044 - +1.3 41,044 - +2.0 41,063 - -2.7 41,177 + -0.4 41,178 - -1.5 41,184 - -0.0 41,191 - +2.3 41,191 - -1.0 41,200 + -1.0 41,201 - -2.3 41,214 + -3.6 41,218 + -0.2 41,218 + -3.5 41,218 + -1.7 41,234 + -0.1 41,234 + -2.3 41,234 + -2.5 41,235 - -1.7 41,235 - +0.3 41,235 - +0.3 41,235 - +2.3 41,235 - -2.9 41,333 - +1.3 41,333 - -0.7 41,333 - -0.7 41,341 + HMPREF1078_RS17435 0.10 -0.0 41,342 - HMPREF1078_RS17435 0.10 -0.9 41,345 + HMPREF1078_RS17435 0.11 -2.4 41,345 + HMPREF1078_RS17435 0.11 -2.8 41,345 + HMPREF1078_RS17435 0.11 -1.8 41,345 + HMPREF1078_RS17435 0.11 -2.4 41,346 - HMPREF1078_RS17435 0.11 +0.3 41,461 + HMPREF1078_RS17435 0.19 -3.2 41,461 + HMPREF1078_RS17435 0.19 -1.6 41,483 - HMPREF1078_RS17435 0.21 -2.0 41,498 + HMPREF1078_RS17435 0.22 -1.8 41,498 + HMPREF1078_RS17435 0.22 +1.3 41,498 + HMPREF1078_RS17435 0.22 +0.7 41,498 + HMPREF1078_RS17435 0.22 -3.0 41,498 + HMPREF1078_RS17435 0.22 -2.0 41,498 + HMPREF1078_RS17435 0.22 +2.3 41,498 + HMPREF1078_RS17435 0.22 -1.9 41,498 + HMPREF1078_RS17435 0.22 -1.3 41,499 - HMPREF1078_RS17435 0.22 -1.2 41,499 - HMPREF1078_RS17435 0.22 +0.3 41,499 - HMPREF1078_RS17435 0.22 +0.3 41,519 - HMPREF1078_RS17435 0.24 -0.9 41,590 + HMPREF1078_RS17435 0.29 +0.3 41,702 - HMPREF1078_RS17435 0.38 -0.7 41,702 - HMPREF1078_RS17435 0.38 +1.3 41,702 - HMPREF1078_RS17435 0.38 -2.4 41,769 - HMPREF1078_RS17435 0.43 -1.4 41,814 + HMPREF1078_RS17435 0.46 -3.2 41,814 + HMPREF1078_RS17435 0.46 -1.5 41,814 + HMPREF1078_RS17435 0.46 -1.7 41,814 + HMPREF1078_RS17435 0.46 -2.0 41,815 - HMPREF1078_RS17435 0.46 +0.3 41,815 - HMPREF1078_RS17435 0.46 +0.7 41,815 - HMPREF1078_RS17435 0.46 -0.7 41,816 - HMPREF1078_RS17435 0.46 -1.4 41,837 + HMPREF1078_RS17435 0.48 -1.0 41,838 - HMPREF1078_RS17435 0.48 -0.5 41,838 - HMPREF1078_RS17435 0.48 +0.7 41,875 + HMPREF1078_RS17435 0.51 -3.3 41,875 + HMPREF1078_RS17435 0.51 -1.6 41,923 + HMPREF1078_RS17435 0.54 -3.1 41,924 - HMPREF1078_RS17435 0.55 -1.4 41,924 - HMPREF1078_RS17435 0.55 +0.3 41,975 + HMPREF1078_RS17435 0.58 -1.1 41,976 - HMPREF1078_RS17435 0.59 -0.9 42,016 + HMPREF1078_RS17435 0.62 +0.9 42,017 - HMPREF1078_RS17435 0.62 -0.3 42,018 + HMPREF1078_RS17435 0.62 -2.6 42,018 + HMPREF1078_RS17435 0.62 -1.0 42,070 - HMPREF1078_RS17435 0.66 -0.5 42,154 + HMPREF1078_RS17435 0.72 -0.9 42,154 + HMPREF1078_RS17435 0.72 +0.3 42,155 - HMPREF1078_RS17435 0.72 -2.0 42,160 + HMPREF1078_RS17435 0.73 -2.5 42,161 - HMPREF1078_RS17435 0.73 -0.9 42,161 - HMPREF1078_RS17435 0.73 -0.3 42,166 + HMPREF1078_RS17435 0.73 -2.9 42,166 + HMPREF1078_RS17435 0.73 -2.3 42,166 + HMPREF1078_RS17435 0.73 -0.3 42,166 + HMPREF1078_RS17435 0.73 -0.7 42,166 + HMPREF1078_RS17435 0.73 +0.3 42,167 - HMPREF1078_RS17435 0.73 +0.3 42,167 - HMPREF1078_RS17435 0.73 -2.0 42,203 - HMPREF1078_RS17435 0.76 -1.7 42,203 - HMPREF1078_RS17435 0.76 -2.0 42,263 + HMPREF1078_RS17435 0.80 -2.2 42,263 + HMPREF1078_RS17435 0.80 -2.1 42,263 + HMPREF1078_RS17435 0.80 -0.5 42,263 + HMPREF1078_RS17435 0.80 -1.8 42,263 + HMPREF1078_RS17435 0.80 +0.7 42,263 + HMPREF1078_RS17435 0.80 +2.0 42,264 - HMPREF1078_RS17435 0.80 -1.6 42,264 - HMPREF1078_RS17435 0.80 -1.9 42,264 - HMPREF1078_RS17435 0.80 +0.3 42,289 - HMPREF1078_RS17435 0.82 -1.4 42,324 - HMPREF1078_RS17435 0.85 +0.3 42,338 + HMPREF1078_RS17435 0.86 -2.5 42,338 + HMPREF1078_RS17435 0.86 -1.6 42,338 + HMPREF1078_RS17435 0.86 -2.2 42,339 - HMPREF1078_RS17435 0.86 +0.7 42,339 - HMPREF1078_RS17435 0.86 +2.3 42,339 - HMPREF1078_RS17435 0.86 +0.7 42,339 - HMPREF1078_RS17435 0.86 +0.7 42,349 - HMPREF1078_RS17435 0.87 -2.0 42,464 + -2.0 42,465 - -0.3 42,465 - +1.7 42,511 - +2.3 42,518 + +1.3 42,518 + -0.2 42,519 - +1.3 42,519 - -1.3 42,519 - -2.4 42,519 - -0.5 42,519 - -2.0 42,519 - -0.0 42,519 - +0.7 42,519 - -1.0 42,519 - +0.7 42,522 + +0.2 42,522 + +1.3 42,522 + +0.7 42,523 - -0.7 42,555 + -1.1 42,558 + -0.7 42,558 + -1.0 42,569 + -2.8 42,601 + -1.6 42,601 + +0.3 42,602 - -1.7 42,602 - -0.7 42,602 - +0.7 42,603 + -1.7 42,604 - -0.9 42,632 + +0.1 42,636 + +0.3 42,636 + +0.5 42,636 + -1.0 42,637 - -0.9 42,637 - +0.7 42,663 + +0.3 42,663 + -1.7 42,663 + -1.3 42,664 - +2.3 42,678 + +0.1 42,678 + -2.7 42,689 + -2.7 42,689 + +0.7 42,692 + +1.2 42,692 + -0.0 42,692 + +0.2 42,707 + -0.0 42,707 + +0.7 42,707 + -2.3 42,732 + -1.7 42,732 + -0.0 42,732 + -0.7 42,733 - -0.9 42,733 - -0.5 42,733 - -2.0 42,734 + -0.7 42,735 - -1.3 42,735 - -0.0 42,735 - -0.3 42,735 - -1.3 42,754 - -0.5 42,764 - -0.9 42,764 - -0.5 42,822 + -0.0 42,823 - +0.7 42,825 + -1.0 42,826 - +1.3 42,826 - -0.0 42,829 + -0.8 42,829 + -0.1 42,829 + -0.4 42,830 - +0.7 42,830 - -0.0 42,854 - +0.3 42,898 + -1.3 42,898 + -1.4 42,898 + +0.6 42,923 + -1.4 42,927 - -1.4 42,930 + HMPREF1078_RS17440 0.10 +1.1 42,930 + HMPREF1078_RS17440 0.10 -1.5 42,930 + HMPREF1078_RS17440 0.10 -1.0 42,930 + HMPREF1078_RS17440 0.10 -1.4 42,931 - HMPREF1078_RS17440 0.11 -1.6 42,931 - HMPREF1078_RS17440 0.11 -0.9 42,931 - HMPREF1078_RS17440 0.11 -0.3 42,931 - HMPREF1078_RS17440 0.11 -0.7 42,956 + HMPREF1078_RS17440 0.21 -0.0 42,956 + HMPREF1078_RS17440 0.21 -1.5 42,983 - HMPREF1078_RS17440 0.33 -0.0 42,996 + HMPREF1078_RS17440 0.39 -1.3 43,000 + HMPREF1078_RS17440 0.41 -0.8 43,007 + HMPREF1078_RS17440 0.44 -1.2 43,007 + HMPREF1078_RS17440 0.44 +1.6 43,008 - HMPREF1078_RS17440 0.44 -0.0 43,008 - HMPREF1078_RS17440 0.44 -0.7 43,063 + HMPREF1078_RS17440 0.68 +1.4 43,110 + HMPREF1078_RS17440 0.89 -2.6 43,110 + HMPREF1078_RS17440 0.89 +0.1 43,111 - HMPREF1078_RS17440 0.89 +0.3 43,111 - HMPREF1078_RS17440 0.89 +2.3 43,120 - -0.5 43,120 - -0.3
Or see this region's nucleotide sequence