Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16710 and HMPREF1078_RS16715 are separated by 68 nucleotides HMPREF1078_RS16715 and HMPREF1078_RS16720 are separated by 90 nucleotides HMPREF1078_RS16720 and HMPREF1078_RS16725 are separated by 60 nucleotides HMPREF1078_RS16725 and HMPREF1078_RS16730 are separated by 27 nucleotides
HMPREF1078_RS16710: HMPREF1078_RS16710 - chorismate synthase, at 56,760 to 57,830
_RS16710
HMPREF1078_RS16715: HMPREF1078_RS16715 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 57,899 to 58,372
_RS16715
HMPREF1078_RS16720: HMPREF1078_RS16720 - DUF4783 domain-containing protein, at 58,463 to 58,834
_RS16720
HMPREF1078_RS16725: HMPREF1078_RS16725 - carboxylating nicotinate-nucleotide diphosphorylase, at 58,895 to 59,752
_RS16725
HMPREF1078_RS16730: HMPREF1078_RS16730 - acyltransferase, at 59,780 to 60,355
_RS16730
Position (kb) 58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 57.495 kb on + strand, within HMPREF1078_RS16710 at 57.521 kb on - strand, within HMPREF1078_RS16710 at 57.522 kb on + strand, within HMPREF1078_RS16710 at 57.581 kb on + strand, within HMPREF1078_RS16710 at 57.601 kb on + strand, within HMPREF1078_RS16710 at 57.602 kb on - strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.611 kb on + strand, within HMPREF1078_RS16710 at 57.629 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.633 kb on + strand, within HMPREF1078_RS16710 at 57.634 kb on - strand, within HMPREF1078_RS16710 at 57.693 kb on - strand, within HMPREF1078_RS16710 at 57.809 kb on + strand at 57.810 kb on - strand at 57.849 kb on + strand at 57.850 kb on - strand at 57.850 kb on - strand at 57.855 kb on + strand at 57.856 kb on - strand at 57.866 kb on + strand at 57.867 kb on - strand at 57.876 kb on + strand at 57.882 kb on + strand at 57.882 kb on + strand at 57.900 kb on + strand at 57.900 kb on + strand at 57.901 kb on - strand at 57.901 kb on - strand at 57.913 kb on - strand at 57.946 kb on - strand at 57.946 kb on - strand at 58.090 kb on + strand, within HMPREF1078_RS16715 at 58.091 kb on - strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.110 kb on + strand, within HMPREF1078_RS16715 at 58.111 kb on - strand, within HMPREF1078_RS16715 at 58.111 kb on - strand, within HMPREF1078_RS16715 at 58.167 kb on + strand, within HMPREF1078_RS16715 at 58.167 kb on + strand, within HMPREF1078_RS16715 at 58.182 kb on - strand, within HMPREF1078_RS16715 at 58.250 kb on - strand, within HMPREF1078_RS16715 at 58.282 kb on + strand, within HMPREF1078_RS16715 at 58.283 kb on - strand, within HMPREF1078_RS16715 at 58.303 kb on + strand, within HMPREF1078_RS16715 at 58.303 kb on + strand, within HMPREF1078_RS16715 at 58.304 kb on - strand, within HMPREF1078_RS16715 at 58.304 kb on - strand, within HMPREF1078_RS16715 at 58.305 kb on + strand, within HMPREF1078_RS16715 at 58.306 kb on - strand, within HMPREF1078_RS16715 at 58.402 kb on - strand at 58.422 kb on + strand at 58.422 kb on + strand at 58.422 kb on + strand at 58.430 kb on + strand at 58.435 kb on + strand at 58.438 kb on + strand at 58.512 kb on + strand, within HMPREF1078_RS16720 at 58.512 kb on + strand, within HMPREF1078_RS16720 at 58.527 kb on + strand, within HMPREF1078_RS16720 at 58.534 kb on + strand, within HMPREF1078_RS16720 at 58.592 kb on + strand, within HMPREF1078_RS16720 at 58.746 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.750 kb on + strand, within HMPREF1078_RS16720 at 58.784 kb on + strand, within HMPREF1078_RS16720 at 58.784 kb on + strand, within HMPREF1078_RS16720 at 58.810 kb on + strand at 58.812 kb on + strand at 58.812 kb on + strand at 58.812 kb on + strand at 58.843 kb on + strand at 58.866 kb on + strand at 58.880 kb on + strand at 59.740 kb on + strand at 59.750 kb on + strand at 59.750 kb on + strand at 59.810 kb on + strand at 59.810 kb on + strand at 59.817 kb on + strand at 59.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 57,495 + HMPREF1078_RS16710 0.69 -0.2 57,521 - HMPREF1078_RS16710 0.71 +0.8 57,522 + HMPREF1078_RS16710 0.71 -0.8 57,581 + HMPREF1078_RS16710 0.77 +1.4 57,601 + HMPREF1078_RS16710 0.79 +2.4 57,602 - HMPREF1078_RS16710 0.79 +2.4 57,611 + HMPREF1078_RS16710 0.79 +0.4 57,611 + HMPREF1078_RS16710 0.79 +0.4 57,629 + HMPREF1078_RS16710 0.81 -0.2 57,633 + HMPREF1078_RS16710 0.82 +1.4 57,633 + HMPREF1078_RS16710 0.82 +1.4 57,633 + HMPREF1078_RS16710 0.82 +0.8 57,634 - HMPREF1078_RS16710 0.82 +0.4 57,693 - HMPREF1078_RS16710 0.87 -0.6 57,809 + +2.4 57,810 - -0.4 57,849 + -2.2 57,850 - -0.4 57,850 - -1.6 57,855 + +0.4 57,856 - -1.8 57,866 + -1.3 57,867 - +0.4 57,876 + +1.4 57,882 + +0.4 57,882 + +0.0 57,900 + -1.9 57,900 + +2.8 57,901 - -1.3 57,901 - +0.0 57,913 - -0.4 57,946 - -1.5 57,946 - -2.8 58,090 + HMPREF1078_RS16715 0.40 -2.7 58,091 - HMPREF1078_RS16715 0.41 -2.0 58,110 + HMPREF1078_RS16715 0.45 -1.2 58,110 + HMPREF1078_RS16715 0.45 +1.4 58,110 + HMPREF1078_RS16715 0.45 -0.8 58,110 + HMPREF1078_RS16715 0.45 -0.7 58,110 + HMPREF1078_RS16715 0.45 +1.4 58,110 + HMPREF1078_RS16715 0.45 +1.4 58,110 + HMPREF1078_RS16715 0.45 -0.4 58,110 + HMPREF1078_RS16715 0.45 +1.4 58,111 - HMPREF1078_RS16715 0.45 -0.6 58,111 - HMPREF1078_RS16715 0.45 +1.4 58,167 + HMPREF1078_RS16715 0.57 -1.2 58,167 + HMPREF1078_RS16715 0.57 +0.8 58,182 - HMPREF1078_RS16715 0.60 -1.7 58,250 - HMPREF1078_RS16715 0.74 -1.8 58,282 + HMPREF1078_RS16715 0.81 -0.7 58,283 - HMPREF1078_RS16715 0.81 +0.8 58,303 + HMPREF1078_RS16715 0.85 +0.6 58,303 + HMPREF1078_RS16715 0.85 -1.5 58,304 - HMPREF1078_RS16715 0.85 -1.3 58,304 - HMPREF1078_RS16715 0.85 -0.1 58,305 + HMPREF1078_RS16715 0.86 +0.0 58,306 - HMPREF1078_RS16715 0.86 -1.0 58,402 - -3.0 58,422 + -0.1 58,422 + +0.6 58,422 + -0.2 58,430 + +0.2 58,435 + +0.4 58,438 + -1.3 58,512 + HMPREF1078_RS16720 0.13 +0.8 58,512 + HMPREF1078_RS16720 0.13 -1.0 58,527 + HMPREF1078_RS16720 0.17 -1.2 58,534 + HMPREF1078_RS16720 0.19 +0.4 58,592 + HMPREF1078_RS16720 0.35 -2.3 58,746 + HMPREF1078_RS16720 0.76 -2.0 58,750 + HMPREF1078_RS16720 0.77 +0.0 58,750 + HMPREF1078_RS16720 0.77 -1.7 58,750 + HMPREF1078_RS16720 0.77 -0.4 58,750 + HMPREF1078_RS16720 0.77 -0.1 58,750 + HMPREF1078_RS16720 0.77 -1.9 58,750 + HMPREF1078_RS16720 0.77 -1.1 58,784 + HMPREF1078_RS16720 0.86 -0.3 58,784 + HMPREF1078_RS16720 0.86 +0.2 58,810 + +0.4 58,812 + -3.4 58,812 + +2.4 58,812 + -2.7 58,843 + -1.0 58,866 + +0.9 58,880 + +0.8 59,740 + +0.0 59,750 + +1.4 59,750 + -1.8 59,810 + -3.1 59,810 + -2.2 59,817 + -2.4 59,818 - +0.0
Or see this region's nucleotide sequence