Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13725

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13720 and HMPREF1078_RS13725 are separated by 299 nucleotidesHMPREF1078_RS13725 and HMPREF1078_RS13730 are separated by 11 nucleotides HMPREF1078_RS13720: HMPREF1078_RS13720 - family 10 glycosylhydrolase, at 196,335 to 197,813 _RS13720 HMPREF1078_RS13725: HMPREF1078_RS13725 - sigma-70 family RNA polymerase sigma factor, at 198,113 to 198,640 _RS13725 HMPREF1078_RS13730: HMPREF1078_RS13730 - porin family protein, at 198,652 to 199,881 _RS13730 Position (kb) 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 197.139 kb on + strand, within HMPREF1078_RS13720at 197.193 kb on - strand, within HMPREF1078_RS13720at 197.211 kb on + strand, within HMPREF1078_RS13720at 197.211 kb on + strand, within HMPREF1078_RS13720at 197.211 kb on + strand, within HMPREF1078_RS13720at 197.211 kb on + strand, within HMPREF1078_RS13720at 197.211 kb on + strand, within HMPREF1078_RS13720at 197.212 kb on - strand, within HMPREF1078_RS13720at 197.212 kb on - strand, within HMPREF1078_RS13720at 197.212 kb on - strand, within HMPREF1078_RS13720at 197.215 kb on - strand, within HMPREF1078_RS13720at 197.225 kb on + strand, within HMPREF1078_RS13720at 197.254 kb on + strand, within HMPREF1078_RS13720at 197.255 kb on - strand, within HMPREF1078_RS13720at 197.259 kb on - strand, within HMPREF1078_RS13720at 197.359 kb on - strand, within HMPREF1078_RS13720at 197.370 kb on + strand, within HMPREF1078_RS13720at 197.387 kb on + strand, within HMPREF1078_RS13720at 197.408 kb on + strand, within HMPREF1078_RS13720at 197.421 kb on - strand, within HMPREF1078_RS13720at 197.421 kb on - strand, within HMPREF1078_RS13720at 197.432 kb on - strand, within HMPREF1078_RS13720at 197.433 kb on + strand, within HMPREF1078_RS13720at 197.433 kb on + strand, within HMPREF1078_RS13720at 197.433 kb on + strand, within HMPREF1078_RS13720at 197.434 kb on - strand, within HMPREF1078_RS13720at 197.450 kb on + strand, within HMPREF1078_RS13720at 197.455 kb on - strand, within HMPREF1078_RS13720at 197.455 kb on - strand, within HMPREF1078_RS13720at 197.455 kb on - strand, within HMPREF1078_RS13720at 197.455 kb on - strand, within HMPREF1078_RS13720at 197.457 kb on + strand, within HMPREF1078_RS13720at 197.458 kb on - strand, within HMPREF1078_RS13720at 197.459 kb on + strand, within HMPREF1078_RS13720at 197.459 kb on + strand, within HMPREF1078_RS13720at 197.459 kb on + strand, within HMPREF1078_RS13720at 197.463 kb on + strand, within HMPREF1078_RS13720at 197.464 kb on - strand, within HMPREF1078_RS13720at 197.528 kb on - strand, within HMPREF1078_RS13720at 197.528 kb on - strand, within HMPREF1078_RS13720at 197.602 kb on - strand, within HMPREF1078_RS13720at 197.603 kb on + strand, within HMPREF1078_RS13720at 197.604 kb on - strand, within HMPREF1078_RS13720at 197.610 kb on + strand, within HMPREF1078_RS13720at 197.655 kb on - strand, within HMPREF1078_RS13720at 197.688 kb on + strandat 197.688 kb on + strandat 197.688 kb on + strandat 197.688 kb on + strandat 197.722 kb on - strandat 197.724 kb on - strandat 197.725 kb on + strandat 197.726 kb on - strandat 197.726 kb on - strandat 197.756 kb on + strandat 197.756 kb on + strandat 197.756 kb on + strandat 197.757 kb on - strandat 197.758 kb on + strandat 197.758 kb on + strandat 197.758 kb on + strandat 197.758 kb on + strandat 197.758 kb on + strandat 197.759 kb on - strandat 197.759 kb on - strandat 197.784 kb on + strandat 197.784 kb on + strandat 197.785 kb on - strandat 197.785 kb on - strandat 197.788 kb on - strandat 197.812 kb on - strandat 197.818 kb on - strandat 197.843 kb on + strandat 197.844 kb on - strandat 197.909 kb on - strandat 197.916 kb on + strandat 197.919 kb on - strandat 197.923 kb on + strandat 197.923 kb on + strandat 197.923 kb on + strandat 197.923 kb on + strandat 197.923 kb on + strandat 197.923 kb on + strandat 197.924 kb on - strandat 197.924 kb on - strandat 197.938 kb on + strandat 197.938 kb on + strandat 197.943 kb on - strandat 197.986 kb on - strandat 197.997 kb on + strandat 197.998 kb on - strandat 197.998 kb on - strandat 197.998 kb on - strandat 198.027 kb on + strandat 198.069 kb on + strandat 198.069 kb on + strandat 198.069 kb on + strandat 198.072 kb on + strandat 198.073 kb on - strandat 198.078 kb on + strandat 198.078 kb on + strandat 198.078 kb on + strandat 198.078 kb on + strandat 198.078 kb on + strandat 198.078 kb on + strandat 198.079 kb on - strandat 198.111 kb on - strandat 198.142 kb on + strandat 198.142 kb on + strandat 198.142 kb on + strandat 198.143 kb on - strandat 198.143 kb on - strandat 198.174 kb on + strand, within HMPREF1078_RS13725at 198.175 kb on - strand, within HMPREF1078_RS13725at 198.175 kb on - strand, within HMPREF1078_RS13725at 198.177 kb on - strand, within HMPREF1078_RS13725at 198.186 kb on - strand, within HMPREF1078_RS13725at 198.218 kb on + strand, within HMPREF1078_RS13725at 198.218 kb on + strand, within HMPREF1078_RS13725at 198.223 kb on + strand, within HMPREF1078_RS13725at 198.436 kb on + strand, within HMPREF1078_RS13725at 198.436 kb on + strand, within HMPREF1078_RS13725at 198.437 kb on - strand, within HMPREF1078_RS13725at 198.437 kb on - strand, within HMPREF1078_RS13725at 198.438 kb on + strand, within HMPREF1078_RS13725at 198.445 kb on + strand, within HMPREF1078_RS13725at 198.445 kb on + strand, within HMPREF1078_RS13725at 198.538 kb on + strand, within HMPREF1078_RS13725at 198.538 kb on + strand, within HMPREF1078_RS13725at 198.539 kb on - strand, within HMPREF1078_RS13725at 198.539 kb on - strand, within HMPREF1078_RS13725at 198.562 kb on + strand, within HMPREF1078_RS13725at 198.562 kb on + strand, within HMPREF1078_RS13725at 198.562 kb on + strand, within HMPREF1078_RS13725at 198.563 kb on - strand, within HMPREF1078_RS13725at 198.564 kb on + strand, within HMPREF1078_RS13725at 198.565 kb on - strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.574 kb on + strand, within HMPREF1078_RS13725at 198.575 kb on - strand, within HMPREF1078_RS13725at 198.609 kb on + strandat 198.610 kb on - strandat 198.642 kb on + strandat 198.672 kb on + strandat 198.674 kb on + strandat 198.674 kb on + strandat 198.746 kb on + strandat 198.799 kb on + strand, within HMPREF1078_RS13730at 198.819 kb on + strand, within HMPREF1078_RS13730at 198.828 kb on - strand, within HMPREF1078_RS13730at 198.836 kb on + strand, within HMPREF1078_RS13730at 198.837 kb on - strand, within HMPREF1078_RS13730at 198.850 kb on + strand, within HMPREF1078_RS13730at 199.275 kb on + strand, within HMPREF1078_RS13730at 199.283 kb on + strand, within HMPREF1078_RS13730at 199.409 kb on + strand, within HMPREF1078_RS13730at 199.409 kb on + strand, within HMPREF1078_RS13730at 199.428 kb on - strand, within HMPREF1078_RS13730at 199.464 kb on + strand, within HMPREF1078_RS13730at 199.497 kb on + strand, within HMPREF1078_RS13730at 199.498 kb on - strand, within HMPREF1078_RS13730at 199.499 kb on + strand, within HMPREF1078_RS13730at 199.499 kb on + strand, within HMPREF1078_RS13730at 199.500 kb on - strand, within HMPREF1078_RS13730at 199.501 kb on + strand, within HMPREF1078_RS13730at 199.560 kb on + strand, within HMPREF1078_RS13730

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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197,139 + HMPREF1078_RS13720 0.54 -0.4
197,193 - HMPREF1078_RS13720 0.58 +0.8
197,211 + HMPREF1078_RS13720 0.59 -0.2
197,211 + HMPREF1078_RS13720 0.59 +0.1
197,211 + HMPREF1078_RS13720 0.59 -0.3
197,211 + HMPREF1078_RS13720 0.59 +1.4
197,211 + HMPREF1078_RS13720 0.59 +1.4
197,212 - HMPREF1078_RS13720 0.59 -1.1
197,212 - HMPREF1078_RS13720 0.59 -0.2
197,212 - HMPREF1078_RS13720 0.59 +1.0
197,215 - HMPREF1078_RS13720 0.59 +0.1
197,225 + HMPREF1078_RS13720 0.60 +0.2
197,254 + HMPREF1078_RS13720 0.62 -1.2
197,255 - HMPREF1078_RS13720 0.62 -1.2
197,259 - HMPREF1078_RS13720 0.62 +0.2
197,359 - HMPREF1078_RS13720 0.69 -1.4
197,370 + HMPREF1078_RS13720 0.70 -1.9
197,387 + HMPREF1078_RS13720 0.71 +0.1
197,408 + HMPREF1078_RS13720 0.73 +1.5
197,421 - HMPREF1078_RS13720 0.73 +0.4
197,421 - HMPREF1078_RS13720 0.73 +0.6
197,432 - HMPREF1078_RS13720 0.74 -1.1
197,433 + HMPREF1078_RS13720 0.74 +2.4
197,433 + HMPREF1078_RS13720 0.74 +1.2
197,433 + HMPREF1078_RS13720 0.74 -0.6
197,434 - HMPREF1078_RS13720 0.74 -1.8
197,450 + HMPREF1078_RS13720 0.75 +0.4
197,455 - HMPREF1078_RS13720 0.76 -0.6
197,455 - HMPREF1078_RS13720 0.76 +0.8
197,455 - HMPREF1078_RS13720 0.76 -1.1
197,455 - HMPREF1078_RS13720 0.76 -0.4
197,457 + HMPREF1078_RS13720 0.76 +1.3
197,458 - HMPREF1078_RS13720 0.76 +2.4
197,459 + HMPREF1078_RS13720 0.76 -0.7
197,459 + HMPREF1078_RS13720 0.76 +0.5
197,459 + HMPREF1078_RS13720 0.76 +0.8
197,463 + HMPREF1078_RS13720 0.76 +0.1
197,464 - HMPREF1078_RS13720 0.76 -1.4
197,528 - HMPREF1078_RS13720 0.81 -1.0
197,528 - HMPREF1078_RS13720 0.81 -0.5
197,602 - HMPREF1078_RS13720 0.86 -0.0
197,603 + HMPREF1078_RS13720 0.86 -1.1
197,604 - HMPREF1078_RS13720 0.86 -1.9
197,610 + HMPREF1078_RS13720 0.86 +0.3
197,655 - HMPREF1078_RS13720 0.89 +0.6
197,688 + -2.6
197,688 + -0.0
197,688 + +0.4
197,688 + -0.8
197,722 - -0.6
197,724 - -1.2
197,725 + -0.8
197,726 - -1.5
197,726 - -0.8
197,756 + -0.3
197,756 + -0.9
197,756 + -1.3
197,757 - -0.3
197,758 + -1.7
197,758 + +1.6
197,758 + -0.6
197,758 + -0.2
197,758 + -0.2
197,759 - +0.7
197,759 - +0.8
197,784 + +0.1
197,784 + -0.8
197,785 - -0.6
197,785 - -0.1
197,788 - -0.8
197,812 - -1.7
197,818 - +0.1
197,843 + +0.1
197,844 - -1.0
197,909 - -0.9
197,916 + -1.1
197,919 - -0.9
197,923 + -1.8
197,923 + +0.2
197,923 + +1.0
197,923 + +0.7
197,923 + +0.4
197,923 + +1.2
197,924 - -1.7
197,924 - -1.9
197,938 + -0.1
197,938 + -0.4
197,943 - -2.3
197,986 - +1.4
197,997 + -0.8
197,998 - -0.4
197,998 - -0.3
197,998 - -2.4
198,027 + +0.5
198,069 + +0.1
198,069 + -0.9
198,069 + +0.1
198,072 + -0.1
198,073 - -0.9
198,078 + -0.4
198,078 + +0.1
198,078 + +0.7
198,078 + +0.4
198,078 + +1.8
198,078 + -1.3
198,079 - -0.8
198,111 - +0.1
198,142 + +0.8
198,142 + -0.8
198,142 + -0.9
198,143 - -0.6
198,143 - -1.6
198,174 + HMPREF1078_RS13725 0.12 -1.1
198,175 - HMPREF1078_RS13725 0.12 -2.9
198,175 - HMPREF1078_RS13725 0.12 +0.8
198,177 - HMPREF1078_RS13725 0.12 +1.4
198,186 - HMPREF1078_RS13725 0.14 -0.4
198,218 + HMPREF1078_RS13725 0.20 -1.5
198,218 + HMPREF1078_RS13725 0.20 -0.6
198,223 + HMPREF1078_RS13725 0.21 -1.4
198,436 + HMPREF1078_RS13725 0.61 -1.3
198,436 + HMPREF1078_RS13725 0.61 -0.6
198,437 - HMPREF1078_RS13725 0.61 -0.6
198,437 - HMPREF1078_RS13725 0.61 -1.2
198,438 + HMPREF1078_RS13725 0.62 -0.8
198,445 + HMPREF1078_RS13725 0.63 +0.8
198,445 + HMPREF1078_RS13725 0.63 +0.1
198,538 + HMPREF1078_RS13725 0.80 -1.7
198,538 + HMPREF1078_RS13725 0.80 -1.2
198,539 - HMPREF1078_RS13725 0.81 -3.2
198,539 - HMPREF1078_RS13725 0.81 -0.4
198,562 + HMPREF1078_RS13725 0.85 -1.4
198,562 + HMPREF1078_RS13725 0.85 -1.8
198,562 + HMPREF1078_RS13725 0.85 -2.7
198,563 - HMPREF1078_RS13725 0.85 -1.3
198,564 + HMPREF1078_RS13725 0.85 +0.4
198,565 - HMPREF1078_RS13725 0.86 -0.2
198,574 + HMPREF1078_RS13725 0.87 +0.1
198,574 + HMPREF1078_RS13725 0.87 +0.1
198,574 + HMPREF1078_RS13725 0.87 -0.2
198,574 + HMPREF1078_RS13725 0.87 -1.3
198,574 + HMPREF1078_RS13725 0.87 -0.4
198,574 + HMPREF1078_RS13725 0.87 -1.2
198,575 - HMPREF1078_RS13725 0.88 -3.3
198,609 + -1.1
198,610 - -0.8
198,642 + -0.6
198,672 + +0.8
198,674 + +0.4
198,674 + +1.4
198,746 + +1.9
198,799 + HMPREF1078_RS13730 0.12 -0.9
198,819 + HMPREF1078_RS13730 0.14 +0.4
198,828 - HMPREF1078_RS13730 0.14 +2.4
198,836 + HMPREF1078_RS13730 0.15 -3.0
198,837 - HMPREF1078_RS13730 0.15 +2.4
198,850 + HMPREF1078_RS13730 0.16 +1.8
199,275 + HMPREF1078_RS13730 0.51 +1.4
199,283 + HMPREF1078_RS13730 0.51 +0.8
199,409 + HMPREF1078_RS13730 0.62 +1.4
199,409 + HMPREF1078_RS13730 0.62 +2.4
199,428 - HMPREF1078_RS13730 0.63 +0.8
199,464 + HMPREF1078_RS13730 0.66 +0.1
199,497 + HMPREF1078_RS13730 0.69 +0.8
199,498 - HMPREF1078_RS13730 0.69 +0.4
199,499 + HMPREF1078_RS13730 0.69 +2.4
199,499 + HMPREF1078_RS13730 0.69 +0.1
199,500 - HMPREF1078_RS13730 0.69 +2.4
199,501 + HMPREF1078_RS13730 0.69 +2.4
199,560 + HMPREF1078_RS13730 0.74 +2.4

Or see this region's nucleotide sequence