Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13225 and HMPREF1078_RS13230 are separated by 69 nucleotides HMPREF1078_RS13230 and HMPREF1078_RS13235 are separated by 39 nucleotides HMPREF1078_RS13235 and HMPREF1078_RS13240 are separated by 103 nucleotides
HMPREF1078_RS13225: HMPREF1078_RS13225 - DUF6340 family protein, at 76,110 to 77,141
_RS13225
HMPREF1078_RS13230: HMPREF1078_RS13230 - hypothetical protein, at 77,211 to 77,672
_RS13230
HMPREF1078_RS13235: HMPREF1078_RS13235 - tRNA-Thr, at 77,712 to 77,784
_RS13235
HMPREF1078_RS13240: HMPREF1078_RS13240 - phage integrase SAM-like domain-containing protein, at 77,888 to 78,373
_RS13240
Position (kb) 77
78 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 76.714 kb on + strand, within HMPREF1078_RS13225 at 76.753 kb on - strand, within HMPREF1078_RS13225 at 76.753 kb on - strand, within HMPREF1078_RS13225 at 76.753 kb on - strand, within HMPREF1078_RS13225 at 76.753 kb on - strand, within HMPREF1078_RS13225 at 76.755 kb on - strand, within HMPREF1078_RS13225 at 76.755 kb on - strand, within HMPREF1078_RS13225 at 76.769 kb on + strand, within HMPREF1078_RS13225 at 76.769 kb on + strand, within HMPREF1078_RS13225 at 76.818 kb on - strand, within HMPREF1078_RS13225 at 76.854 kb on + strand, within HMPREF1078_RS13225 at 76.854 kb on + strand, within HMPREF1078_RS13225 at 76.905 kb on + strand, within HMPREF1078_RS13225 at 76.966 kb on - strand, within HMPREF1078_RS13225 at 76.972 kb on + strand, within HMPREF1078_RS13225 at 76.995 kb on + strand, within HMPREF1078_RS13225 at 76.995 kb on + strand, within HMPREF1078_RS13225 at 77.009 kb on + strand, within HMPREF1078_RS13225 at 77.028 kb on - strand, within HMPREF1078_RS13225 at 77.034 kb on - strand, within HMPREF1078_RS13225 at 77.051 kb on + strand at 77.076 kb on + strand at 77.077 kb on - strand at 77.077 kb on - strand at 77.119 kb on + strand at 77.119 kb on + strand at 77.139 kb on + strand at 77.140 kb on - strand at 77.142 kb on + strand at 77.142 kb on + strand at 77.148 kb on + strand at 77.163 kb on - strand at 77.166 kb on - strand at 77.168 kb on + strand at 77.198 kb on - strand at 77.201 kb on + strand at 77.202 kb on - strand at 77.210 kb on + strand at 77.210 kb on + strand at 77.210 kb on + strand at 77.210 kb on + strand at 77.211 kb on - strand at 77.245 kb on + strand at 77.245 kb on + strand at 77.305 kb on - strand, within HMPREF1078_RS13230 at 77.316 kb on + strand, within HMPREF1078_RS13230 at 77.317 kb on - strand, within HMPREF1078_RS13230 at 77.327 kb on - strand, within HMPREF1078_RS13230 at 77.327 kb on - strand, within HMPREF1078_RS13230 at 77.352 kb on - strand, within HMPREF1078_RS13230 at 77.352 kb on - strand, within HMPREF1078_RS13230 at 77.355 kb on + strand, within HMPREF1078_RS13230 at 77.355 kb on + strand, within HMPREF1078_RS13230 at 77.408 kb on + strand, within HMPREF1078_RS13230 at 77.433 kb on - strand, within HMPREF1078_RS13230 at 77.611 kb on + strand, within HMPREF1078_RS13230 at 77.676 kb on + strand at 77.676 kb on + strand at 77.676 kb on + strand at 77.677 kb on - strand at 77.719 kb on + strand at 77.747 kb on + strand, within HMPREF1078_RS13235 at 77.747 kb on + strand, within HMPREF1078_RS13235 at 77.810 kb on - strand at 77.883 kb on - strand at 77.894 kb on - strand at 77.894 kb on - strand at 77.894 kb on - strand at 77.916 kb on - strand at 77.916 kb on - strand at 77.924 kb on - strand at 78.001 kb on + strand, within HMPREF1078_RS13240 at 78.002 kb on - strand, within HMPREF1078_RS13240 at 78.010 kb on - strand, within HMPREF1078_RS13240 at 78.016 kb on + strand, within HMPREF1078_RS13240 at 78.032 kb on - strand, within HMPREF1078_RS13240 at 78.053 kb on - strand, within HMPREF1078_RS13240 at 78.053 kb on - strand, within HMPREF1078_RS13240 at 78.071 kb on + strand, within HMPREF1078_RS13240 at 78.071 kb on + strand, within HMPREF1078_RS13240 at 78.071 kb on + strand, within HMPREF1078_RS13240 at 78.073 kb on + strand, within HMPREF1078_RS13240 at 78.074 kb on - strand, within HMPREF1078_RS13240 at 78.074 kb on - strand, within HMPREF1078_RS13240 at 78.076 kb on - strand, within HMPREF1078_RS13240 at 78.076 kb on - strand, within HMPREF1078_RS13240 at 78.076 kb on - strand, within HMPREF1078_RS13240 at 78.076 kb on - strand, within HMPREF1078_RS13240 at 78.100 kb on - strand, within HMPREF1078_RS13240 at 78.109 kb on + strand, within HMPREF1078_RS13240 at 78.116 kb on - strand, within HMPREF1078_RS13240 at 78.166 kb on - strand, within HMPREF1078_RS13240 at 78.197 kb on - strand, within HMPREF1078_RS13240 at 78.224 kb on + strand, within HMPREF1078_RS13240 at 78.226 kb on + strand, within HMPREF1078_RS13240 at 78.227 kb on - strand, within HMPREF1078_RS13240 at 78.268 kb on + strand, within HMPREF1078_RS13240 at 78.269 kb on - strand, within HMPREF1078_RS13240 at 78.272 kb on + strand, within HMPREF1078_RS13240 at 78.272 kb on + strand, within HMPREF1078_RS13240 at 78.272 kb on + strand, within HMPREF1078_RS13240 at 78.273 kb on - strand, within HMPREF1078_RS13240 at 78.273 kb on - strand, within HMPREF1078_RS13240 at 78.273 kb on - strand, within HMPREF1078_RS13240 at 78.273 kb on - strand, within HMPREF1078_RS13240 at 78.274 kb on + strand, within HMPREF1078_RS13240 at 78.274 kb on + strand, within HMPREF1078_RS13240 at 78.275 kb on - strand, within HMPREF1078_RS13240 at 78.281 kb on - strand, within HMPREF1078_RS13240 at 78.281 kb on - strand, within HMPREF1078_RS13240 at 78.283 kb on + strand, within HMPREF1078_RS13240 at 78.283 kb on + strand, within HMPREF1078_RS13240 at 78.284 kb on - strand, within HMPREF1078_RS13240 at 78.319 kb on + strand, within HMPREF1078_RS13240 at 78.340 kb on + strand at 78.371 kb on + strand at 78.390 kb on + strand at 78.391 kb on - strand at 78.391 kb on - strand at 78.456 kb on + strand at 78.482 kb on - strand at 78.493 kb on + strand at 78.493 kb on + strand at 78.493 kb on + strand at 78.493 kb on + strand at 78.494 kb on - strand at 78.494 kb on - strand at 78.494 kb on - strand at 78.498 kb on + strand at 78.498 kb on + strand at 78.499 kb on - strand at 78.503 kb on + strand at 78.503 kb on + strand at 78.504 kb on - strand at 78.504 kb on - strand at 78.504 kb on - strand at 78.505 kb on + strand at 78.505 kb on + strand at 78.506 kb on - strand at 78.506 kb on - strand at 78.507 kb on + strand at 78.622 kb on + strand at 78.634 kb on + strand at 78.648 kb on + strand at 78.649 kb on - strand at 78.655 kb on - strand at 78.655 kb on - strand at 78.658 kb on + strand at 78.658 kb on + strand at 78.659 kb on - strand at 78.662 kb on - strand at 78.674 kb on + strand at 78.678 kb on + strand at 78.678 kb on + strand at 78.678 kb on + strand at 78.678 kb on + strand at 78.682 kb on - strand at 78.688 kb on + strand at 78.699 kb on - strand at 78.702 kb on + strand at 78.705 kb on + strand at 78.706 kb on - strand at 78.708 kb on + strand at 78.712 kb on + strand at 78.712 kb on + strand at 78.713 kb on - strand at 78.713 kb on - strand at 78.714 kb on + strand at 78.725 kb on + strand at 78.725 kb on + strand at 78.728 kb on + strand at 78.728 kb on + strand at 78.732 kb on + strand at 78.738 kb on + strand at 78.738 kb on + strand at 78.739 kb on - strand at 78.747 kb on + strand at 78.748 kb on - strand at 78.751 kb on - strand at 78.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 76,714 + HMPREF1078_RS13225 0.59 -2.8 76,753 - HMPREF1078_RS13225 0.62 -0.9 76,753 - HMPREF1078_RS13225 0.62 +1.3 76,753 - HMPREF1078_RS13225 0.62 +2.2 76,753 - HMPREF1078_RS13225 0.62 -4.5 76,755 - HMPREF1078_RS13225 0.62 -0.7 76,755 - HMPREF1078_RS13225 0.62 -1.1 76,769 + HMPREF1078_RS13225 0.64 +1.0 76,769 + HMPREF1078_RS13225 0.64 +0.7 76,818 - HMPREF1078_RS13225 0.69 -2.0 76,854 + HMPREF1078_RS13225 0.72 +1.6 76,854 + HMPREF1078_RS13225 0.72 -1.9 76,905 + HMPREF1078_RS13225 0.77 -0.1 76,966 - HMPREF1078_RS13225 0.83 -0.6 76,972 + HMPREF1078_RS13225 0.84 -1.8 76,995 + HMPREF1078_RS13225 0.86 -2.9 76,995 + HMPREF1078_RS13225 0.86 -1.2 77,009 + HMPREF1078_RS13225 0.87 +0.0 77,028 - HMPREF1078_RS13225 0.89 +0.1 77,034 - HMPREF1078_RS13225 0.90 -0.6 77,051 + -3.3 77,076 + -0.3 77,077 - -0.4 77,077 - -1.3 77,119 + +0.3 77,119 + +0.1 77,139 + -3.0 77,140 - +2.1 77,142 + -0.1 77,142 + +0.2 77,148 + -0.2 77,163 - -0.6 77,166 - -0.4 77,168 + +0.8 77,198 - +2.4 77,201 + +0.1 77,202 - +1.4 77,210 + -0.3 77,210 + -1.5 77,210 + +0.4 77,210 + -0.2 77,211 - -1.4 77,245 + +2.4 77,245 + -2.0 77,305 - HMPREF1078_RS13230 0.20 +0.8 77,316 + HMPREF1078_RS13230 0.23 +1.4 77,317 - HMPREF1078_RS13230 0.23 -1.4 77,327 - HMPREF1078_RS13230 0.25 +0.1 77,327 - HMPREF1078_RS13230 0.25 +1.4 77,352 - HMPREF1078_RS13230 0.31 -0.9 77,352 - HMPREF1078_RS13230 0.31 +0.5 77,355 + HMPREF1078_RS13230 0.31 -0.5 77,355 + HMPREF1078_RS13230 0.31 -0.1 77,408 + HMPREF1078_RS13230 0.43 -1.8 77,433 - HMPREF1078_RS13230 0.48 -0.4 77,611 + HMPREF1078_RS13230 0.87 -1.1 77,676 + +1.2 77,676 + -2.2 77,676 + -0.4 77,677 - +0.7 77,719 + +1.4 77,747 + HMPREF1078_RS13235 0.48 -2.6 77,747 + HMPREF1078_RS13235 0.48 -1.1 77,810 - +0.5 77,883 - -0.8 77,894 - +1.7 77,894 - -0.2 77,894 - -2.3 77,916 - +0.3 77,916 - -0.5 77,924 - -1.3 78,001 + HMPREF1078_RS13240 0.23 -1.1 78,002 - HMPREF1078_RS13240 0.23 +0.8 78,010 - HMPREF1078_RS13240 0.25 +0.8 78,016 + HMPREF1078_RS13240 0.26 -0.5 78,032 - HMPREF1078_RS13240 0.30 -1.2 78,053 - HMPREF1078_RS13240 0.34 +1.1 78,053 - HMPREF1078_RS13240 0.34 -0.9 78,071 + HMPREF1078_RS13240 0.38 +1.4 78,071 + HMPREF1078_RS13240 0.38 +1.1 78,071 + HMPREF1078_RS13240 0.38 -3.0 78,073 + HMPREF1078_RS13240 0.38 +0.2 78,074 - HMPREF1078_RS13240 0.38 -0.8 78,074 - HMPREF1078_RS13240 0.38 -0.3 78,076 - HMPREF1078_RS13240 0.39 -1.1 78,076 - HMPREF1078_RS13240 0.39 -0.2 78,076 - HMPREF1078_RS13240 0.39 +0.2 78,076 - HMPREF1078_RS13240 0.39 -2.1 78,100 - HMPREF1078_RS13240 0.44 +1.1 78,109 + HMPREF1078_RS13240 0.45 +0.4 78,116 - HMPREF1078_RS13240 0.47 -0.9 78,166 - HMPREF1078_RS13240 0.57 +2.4 78,197 - HMPREF1078_RS13240 0.64 -2.4 78,224 + HMPREF1078_RS13240 0.69 -0.4 78,226 + HMPREF1078_RS13240 0.70 -1.2 78,227 - HMPREF1078_RS13240 0.70 +0.1 78,268 + HMPREF1078_RS13240 0.78 -0.8 78,269 - HMPREF1078_RS13240 0.78 +0.8 78,272 + HMPREF1078_RS13240 0.79 +0.2 78,272 + HMPREF1078_RS13240 0.79 -0.6 78,272 + HMPREF1078_RS13240 0.79 -1.5 78,273 - HMPREF1078_RS13240 0.79 -0.7 78,273 - HMPREF1078_RS13240 0.79 +0.8 78,273 - HMPREF1078_RS13240 0.79 -1.4 78,273 - HMPREF1078_RS13240 0.79 +0.1 78,274 + HMPREF1078_RS13240 0.79 -1.2 78,274 + HMPREF1078_RS13240 0.79 -1.4 78,275 - HMPREF1078_RS13240 0.80 -0.5 78,281 - HMPREF1078_RS13240 0.81 +2.4 78,281 - HMPREF1078_RS13240 0.81 -1.0 78,283 + HMPREF1078_RS13240 0.81 +0.4 78,283 + HMPREF1078_RS13240 0.81 -1.7 78,284 - HMPREF1078_RS13240 0.81 -0.4 78,319 + HMPREF1078_RS13240 0.89 -0.4 78,340 + +0.7 78,371 + +1.6 78,390 + +0.3 78,391 - -0.6 78,391 - +0.8 78,456 + -1.9 78,482 - -1.1 78,493 + -1.6 78,493 + -1.4 78,493 + +0.8 78,493 + -0.5 78,494 - +1.4 78,494 - +0.1 78,494 - -0.7 78,498 + -0.5 78,498 + +2.4 78,499 - +0.4 78,503 + +0.5 78,503 + -1.8 78,504 - -0.4 78,504 - +0.2 78,504 - -0.6 78,505 + -0.2 78,505 + -1.2 78,506 - -1.9 78,506 - -1.2 78,507 + +0.8 78,622 + +0.7 78,634 + -0.9 78,648 + -1.6 78,649 - +0.2 78,655 - +0.4 78,655 - +1.8 78,658 + -2.3 78,658 + -0.3 78,659 - -1.0 78,662 - -0.4 78,674 + -0.6 78,678 + -1.0 78,678 + +0.8 78,678 + -1.7 78,678 + -0.1 78,682 - -0.8 78,688 + -1.0 78,699 - -2.9 78,702 + +1.4 78,705 + -2.6 78,706 - +0.7 78,708 + -1.8 78,712 + -0.8 78,712 + -0.3 78,713 - +0.5 78,713 - +0.6 78,714 + -1.8 78,725 + -0.2 78,725 + +1.1 78,728 + -0.8 78,728 + +0.5 78,732 + -0.3 78,738 + +0.9 78,738 + -1.5 78,739 - +0.2 78,747 + +0.1 78,748 - -2.7 78,751 - -1.0 78,752 + +0.6
Or see this region's nucleotide sequence