Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13035 and HMPREF1078_RS13040 are separated by 77 nucleotides HMPREF1078_RS13040 and HMPREF1078_RS13045 are separated by 190 nucleotides HMPREF1078_RS13045 and HMPREF1078_RS13050 are separated by 113 nucleotides
HMPREF1078_RS13035: HMPREF1078_RS13035 - thiamine-phosphate kinase, at 25,929 to 26,960
_RS13035
HMPREF1078_RS13040: HMPREF1078_RS13040 - tRNA-Phe, at 27,038 to 27,110
_RS13040
HMPREF1078_RS13045: HMPREF1078_RS13045 - porin family protein, at 27,301 to 27,888
_RS13045
HMPREF1078_RS13050: HMPREF1078_RS13050 - primosomal protein N', at 28,002 to 30,464
_RS13050
Position (kb) 27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.010 kb on + strand at 27.046 kb on - strand, within HMPREF1078_RS13040 at 27.124 kb on + strand at 27.177 kb on - strand at 27.187 kb on - strand at 27.198 kb on - strand at 27.210 kb on - strand at 27.226 kb on + strand at 27.236 kb on + strand at 27.236 kb on + strand at 27.237 kb on - strand at 27.237 kb on - strand at 27.244 kb on + strand at 27.245 kb on - strand at 27.245 kb on - strand at 27.245 kb on - strand at 27.248 kb on - strand at 27.249 kb on + strand at 27.249 kb on + strand at 27.250 kb on - strand at 27.276 kb on + strand at 27.280 kb on + strand at 27.281 kb on - strand at 27.288 kb on + strand at 27.301 kb on - strand at 27.321 kb on + strand at 27.321 kb on + strand at 27.321 kb on + strand at 27.321 kb on + strand at 27.323 kb on + strand at 27.324 kb on - strand at 27.324 kb on - strand at 27.324 kb on - strand at 27.372 kb on + strand, within HMPREF1078_RS13045 at 27.383 kb on + strand, within HMPREF1078_RS13045 at 27.400 kb on - strand, within HMPREF1078_RS13045 at 27.400 kb on - strand, within HMPREF1078_RS13045 at 27.441 kb on + strand, within HMPREF1078_RS13045 at 27.456 kb on + strand, within HMPREF1078_RS13045 at 27.457 kb on - strand, within HMPREF1078_RS13045 at 27.459 kb on + strand, within HMPREF1078_RS13045 at 27.459 kb on + strand, within HMPREF1078_RS13045 at 27.460 kb on - strand, within HMPREF1078_RS13045 at 27.516 kb on + strand, within HMPREF1078_RS13045 at 27.516 kb on + strand, within HMPREF1078_RS13045 at 27.516 kb on + strand, within HMPREF1078_RS13045 at 27.516 kb on + strand, within HMPREF1078_RS13045 at 27.521 kb on + strand, within HMPREF1078_RS13045 at 27.521 kb on + strand, within HMPREF1078_RS13045 at 27.521 kb on + strand, within HMPREF1078_RS13045 at 27.521 kb on + strand, within HMPREF1078_RS13045 at 27.522 kb on - strand, within HMPREF1078_RS13045 at 27.524 kb on - strand, within HMPREF1078_RS13045 at 27.563 kb on + strand, within HMPREF1078_RS13045 at 27.563 kb on + strand, within HMPREF1078_RS13045 at 27.563 kb on + strand, within HMPREF1078_RS13045 at 27.564 kb on - strand, within HMPREF1078_RS13045 at 27.574 kb on + strand, within HMPREF1078_RS13045 at 27.575 kb on - strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.576 kb on + strand, within HMPREF1078_RS13045 at 27.577 kb on - strand, within HMPREF1078_RS13045 at 27.577 kb on - strand, within HMPREF1078_RS13045 at 27.577 kb on - strand, within HMPREF1078_RS13045 at 27.577 kb on - strand, within HMPREF1078_RS13045 at 27.577 kb on - strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.578 kb on + strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.579 kb on - strand, within HMPREF1078_RS13045 at 27.618 kb on + strand, within HMPREF1078_RS13045 at 27.619 kb on - strand, within HMPREF1078_RS13045 at 27.631 kb on + strand, within HMPREF1078_RS13045 at 27.649 kb on + strand, within HMPREF1078_RS13045 at 27.650 kb on - strand, within HMPREF1078_RS13045 at 27.675 kb on + strand, within HMPREF1078_RS13045 at 27.675 kb on + strand, within HMPREF1078_RS13045 at 27.676 kb on - strand, within HMPREF1078_RS13045 at 27.680 kb on + strand, within HMPREF1078_RS13045 at 27.688 kb on - strand, within HMPREF1078_RS13045 at 27.729 kb on + strand, within HMPREF1078_RS13045 at 27.783 kb on - strand, within HMPREF1078_RS13045 at 27.783 kb on - strand, within HMPREF1078_RS13045 at 27.793 kb on + strand, within HMPREF1078_RS13045 at 27.793 kb on + strand, within HMPREF1078_RS13045 at 27.794 kb on - strand, within HMPREF1078_RS13045 at 27.818 kb on - strand, within HMPREF1078_RS13045 at 27.818 kb on - strand, within HMPREF1078_RS13045 at 27.818 kb on - strand, within HMPREF1078_RS13045 at 27.819 kb on + strand, within HMPREF1078_RS13045 at 27.819 kb on + strand, within HMPREF1078_RS13045 at 27.820 kb on - strand, within HMPREF1078_RS13045 at 27.847 kb on - strand at 27.895 kb on + strand at 27.896 kb on - strand at 27.902 kb on + strand at 27.903 kb on - strand at 27.903 kb on - strand at 27.903 kb on - strand at 27.909 kb on + strand at 27.910 kb on - strand at 27.916 kb on + strand at 27.916 kb on + strand at 27.935 kb on + strand at 27.955 kb on + strand at 27.970 kb on + strand at 27.970 kb on + strand at 27.983 kb on - strand at 27.985 kb on + strand at 27.987 kb on + strand at 27.988 kb on - strand at 27.988 kb on - strand at 28.008 kb on + strand at 28.019 kb on + strand at 28.043 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.047 kb on + strand at 28.048 kb on - strand at 28.049 kb on + strand at 28.049 kb on + strand at 28.050 kb on - strand at 28.053 kb on + strand at 28.053 kb on + strand at 28.053 kb on + strand at 28.053 kb on + strand at 28.053 kb on + strand at 28.053 kb on + strand at 28.061 kb on - strand at 28.061 kb on - strand at 28.061 kb on - strand at 28.061 kb on - strand at 28.128 kb on + strand at 28.129 kb on - strand at 28.131 kb on + strand at 28.133 kb on + strand at 28.133 kb on + strand at 28.134 kb on - strand at 28.134 kb on - strand at 28.136 kb on - strand at 28.197 kb on + strand at 28.266 kb on + strand, within HMPREF1078_RS13050 at 28.266 kb on + strand, within HMPREF1078_RS13050 at 28.293 kb on + strand, within HMPREF1078_RS13050 at 28.293 kb on + strand, within HMPREF1078_RS13050 at 28.343 kb on + strand, within HMPREF1078_RS13050 at 28.343 kb on + strand, within HMPREF1078_RS13050 at 28.344 kb on - strand, within HMPREF1078_RS13050 at 28.347 kb on + strand, within HMPREF1078_RS13050 at 28.347 kb on + strand, within HMPREF1078_RS13050 at 28.347 kb on + strand, within HMPREF1078_RS13050 at 28.475 kb on - strand, within HMPREF1078_RS13050 at 28.499 kb on + strand, within HMPREF1078_RS13050 at 28.563 kb on - strand, within HMPREF1078_RS13050 at 28.581 kb on + strand, within HMPREF1078_RS13050 at 28.581 kb on + strand, within HMPREF1078_RS13050 at 28.581 kb on + strand, within HMPREF1078_RS13050 at 28.788 kb on + strand, within HMPREF1078_RS13050 at 28.789 kb on - strand, within HMPREF1078_RS13050
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 27,010 + +0.2 27,046 - HMPREF1078_RS13040 0.11 -1.1 27,124 + +0.4 27,177 - -0.9 27,187 - -0.1 27,198 - -0.2 27,210 - +1.5 27,226 + +0.1 27,236 + +0.6 27,236 + +0.1 27,237 - -0.8 27,237 - -2.4 27,244 + +0.1 27,245 - -0.4 27,245 - +0.5 27,245 - -1.1 27,248 - -1.4 27,249 + -1.1 27,249 + +2.4 27,250 - -2.1 27,276 + -1.6 27,280 + +1.4 27,281 - -0.1 27,288 + +0.3 27,301 - -1.0 27,321 + -1.5 27,321 + -2.0 27,321 + +2.4 27,321 + -1.4 27,323 + -0.4 27,324 - +0.4 27,324 - +0.1 27,324 - -0.4 27,372 + HMPREF1078_RS13045 0.12 -1.7 27,383 + HMPREF1078_RS13045 0.14 -1.6 27,400 - HMPREF1078_RS13045 0.17 +0.5 27,400 - HMPREF1078_RS13045 0.17 +1.8 27,441 + HMPREF1078_RS13045 0.24 +0.4 27,456 + HMPREF1078_RS13045 0.26 -1.6 27,457 - HMPREF1078_RS13045 0.27 -1.1 27,459 + HMPREF1078_RS13045 0.27 -1.2 27,459 + HMPREF1078_RS13045 0.27 -1.7 27,460 - HMPREF1078_RS13045 0.27 +0.1 27,516 + HMPREF1078_RS13045 0.37 -0.2 27,516 + HMPREF1078_RS13045 0.37 +0.1 27,516 + HMPREF1078_RS13045 0.37 -2.1 27,516 + HMPREF1078_RS13045 0.37 -3.0 27,521 + HMPREF1078_RS13045 0.37 -3.4 27,521 + HMPREF1078_RS13045 0.37 -3.3 27,521 + HMPREF1078_RS13045 0.37 -0.8 27,521 + HMPREF1078_RS13045 0.37 +2.4 27,522 - HMPREF1078_RS13045 0.38 -1.3 27,524 - HMPREF1078_RS13045 0.38 +0.2 27,563 + HMPREF1078_RS13045 0.45 -0.9 27,563 + HMPREF1078_RS13045 0.45 -1.2 27,563 + HMPREF1078_RS13045 0.45 +0.1 27,564 - HMPREF1078_RS13045 0.45 -0.8 27,574 + HMPREF1078_RS13045 0.46 -1.9 27,575 - HMPREF1078_RS13045 0.47 -1.9 27,576 + HMPREF1078_RS13045 0.47 -0.9 27,576 + HMPREF1078_RS13045 0.47 -0.6 27,576 + HMPREF1078_RS13045 0.47 +0.8 27,576 + HMPREF1078_RS13045 0.47 -1.9 27,576 + HMPREF1078_RS13045 0.47 -1.8 27,576 + HMPREF1078_RS13045 0.47 -0.2 27,576 + HMPREF1078_RS13045 0.47 -0.3 27,576 + HMPREF1078_RS13045 0.47 +0.1 27,577 - HMPREF1078_RS13045 0.47 -0.8 27,577 - HMPREF1078_RS13045 0.47 -1.7 27,577 - HMPREF1078_RS13045 0.47 +0.4 27,577 - HMPREF1078_RS13045 0.47 -0.4 27,577 - HMPREF1078_RS13045 0.47 +0.8 27,578 + HMPREF1078_RS13045 0.47 -2.4 27,578 + HMPREF1078_RS13045 0.47 -2.1 27,578 + HMPREF1078_RS13045 0.47 -0.2 27,578 + HMPREF1078_RS13045 0.47 -1.9 27,578 + HMPREF1078_RS13045 0.47 +0.8 27,578 + HMPREF1078_RS13045 0.47 -1.1 27,578 + HMPREF1078_RS13045 0.47 -1.9 27,579 - HMPREF1078_RS13045 0.47 +2.4 27,579 - HMPREF1078_RS13045 0.47 -1.5 27,579 - HMPREF1078_RS13045 0.47 +0.8 27,579 - HMPREF1078_RS13045 0.47 -0.6 27,579 - HMPREF1078_RS13045 0.47 -1.4 27,579 - HMPREF1078_RS13045 0.47 -1.1 27,579 - HMPREF1078_RS13045 0.47 -0.4 27,579 - HMPREF1078_RS13045 0.47 -0.6 27,579 - HMPREF1078_RS13045 0.47 +1.2 27,618 + HMPREF1078_RS13045 0.54 -1.1 27,619 - HMPREF1078_RS13045 0.54 -0.4 27,631 + HMPREF1078_RS13045 0.56 -1.9 27,649 + HMPREF1078_RS13045 0.59 -0.2 27,650 - HMPREF1078_RS13045 0.59 -1.9 27,675 + HMPREF1078_RS13045 0.64 -1.3 27,675 + HMPREF1078_RS13045 0.64 -1.2 27,676 - HMPREF1078_RS13045 0.64 -1.5 27,680 + HMPREF1078_RS13045 0.64 -2.1 27,688 - HMPREF1078_RS13045 0.66 -2.8 27,729 + HMPREF1078_RS13045 0.73 -1.4 27,783 - HMPREF1078_RS13045 0.82 -0.9 27,783 - HMPREF1078_RS13045 0.82 -0.4 27,793 + HMPREF1078_RS13045 0.84 +3.4 27,793 + HMPREF1078_RS13045 0.84 +0.1 27,794 - HMPREF1078_RS13045 0.84 -2.9 27,818 - HMPREF1078_RS13045 0.88 -1.3 27,818 - HMPREF1078_RS13045 0.88 -2.4 27,818 - HMPREF1078_RS13045 0.88 +2.4 27,819 + HMPREF1078_RS13045 0.88 -0.2 27,819 + HMPREF1078_RS13045 0.88 -1.3 27,820 - HMPREF1078_RS13045 0.88 -0.2 27,847 - -0.2 27,895 + -1.9 27,896 - +0.3 27,902 + -0.8 27,903 - +0.1 27,903 - -0.9 27,903 - -0.4 27,909 + -0.3 27,910 - +1.7 27,916 + +2.4 27,916 + +1.6 27,935 + +0.1 27,955 + +0.5 27,970 + +1.7 27,970 + -1.9 27,983 - -0.4 27,985 + +0.8 27,987 + -0.7 27,988 - +2.4 27,988 - +1.4 28,008 + -0.4 28,019 + +0.8 28,043 + +0.4 28,047 + +1.4 28,047 + +1.4 28,047 + +2.4 28,047 + -0.2 28,047 + +0.8 28,047 + +0.8 28,047 + +2.4 28,048 - -0.2 28,049 + +0.4 28,049 + +2.4 28,050 - -0.2 28,053 + +0.1 28,053 + +0.4 28,053 + +0.4 28,053 + +0.1 28,053 + +0.8 28,053 + +1.4 28,061 - +2.4 28,061 - -0.4 28,061 - +2.4 28,061 - +2.4 28,128 + +0.4 28,129 - +0.1 28,131 + +0.4 28,133 + +2.4 28,133 + +0.8 28,134 - +0.4 28,134 - +2.4 28,136 - +1.4 28,197 + +0.4 28,266 + HMPREF1078_RS13050 0.11 +1.4 28,266 + HMPREF1078_RS13050 0.11 +2.4 28,293 + HMPREF1078_RS13050 0.12 +0.4 28,293 + HMPREF1078_RS13050 0.12 +0.8 28,343 + HMPREF1078_RS13050 0.14 +0.4 28,343 + HMPREF1078_RS13050 0.14 +0.1 28,344 - HMPREF1078_RS13050 0.14 +0.8 28,347 + HMPREF1078_RS13050 0.14 +1.4 28,347 + HMPREF1078_RS13050 0.14 +0.1 28,347 + HMPREF1078_RS13050 0.14 -0.4 28,475 - HMPREF1078_RS13050 0.19 +0.4 28,499 + HMPREF1078_RS13050 0.20 +2.4 28,563 - HMPREF1078_RS13050 0.23 +2.4 28,581 + HMPREF1078_RS13050 0.24 +2.4 28,581 + HMPREF1078_RS13050 0.24 +0.1 28,581 + HMPREF1078_RS13050 0.24 +2.4 28,788 + HMPREF1078_RS13050 0.32 +0.1 28,789 - HMPREF1078_RS13050 0.32 +0.8
Or see this region's nucleotide sequence