Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08505

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08500 and HMPREF1078_RS08505 are separated by 148 nucleotidesHMPREF1078_RS08505 and HMPREF1078_RS08510 are separated by 0 nucleotides HMPREF1078_RS08500: HMPREF1078_RS08500 - DUF4435 domain-containing protein, at 276,525 to 278,084 _RS08500 HMPREF1078_RS08505: HMPREF1078_RS08505 - glycosyltransferase family 39 protein, at 278,233 to 279,951 _RS08505 HMPREF1078_RS08510: HMPREF1078_RS08510 - Gfo/Idh/MocA family oxidoreductase, at 279,952 to 281,292 _RS08510 Position (kb) 278 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 277.243 kb on + strand, within HMPREF1078_RS08500at 277.243 kb on + strand, within HMPREF1078_RS08500at 277.251 kb on + strand, within HMPREF1078_RS08500at 277.252 kb on - strand, within HMPREF1078_RS08500at 277.320 kb on + strand, within HMPREF1078_RS08500at 277.321 kb on - strand, within HMPREF1078_RS08500at 277.333 kb on + strand, within HMPREF1078_RS08500at 277.333 kb on + strand, within HMPREF1078_RS08500at 277.453 kb on + strand, within HMPREF1078_RS08500at 277.497 kb on - strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.549 kb on + strand, within HMPREF1078_RS08500at 277.550 kb on - strand, within HMPREF1078_RS08500at 277.550 kb on - strand, within HMPREF1078_RS08500at 277.555 kb on - strand, within HMPREF1078_RS08500at 277.555 kb on - strand, within HMPREF1078_RS08500at 277.571 kb on + strand, within HMPREF1078_RS08500at 277.571 kb on + strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.572 kb on - strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.575 kb on + strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.576 kb on - strand, within HMPREF1078_RS08500at 277.840 kb on + strand, within HMPREF1078_RS08500at 277.855 kb on + strand, within HMPREF1078_RS08500at 277.968 kb on + strandat 277.969 kb on - strandat 277.969 kb on - strandat 277.977 kb on - strandat 278.134 kb on - strandat 278.147 kb on - strandat 278.149 kb on - strandat 278.184 kb on + strandat 278.196 kb on + strandat 278.196 kb on + strandat 278.197 kb on - strandat 278.212 kb on + strandat 278.238 kb on + strandat 278.295 kb on + strandat 278.368 kb on + strandat 278.440 kb on + strand, within HMPREF1078_RS08505at 278.441 kb on - strand, within HMPREF1078_RS08505at 278.484 kb on + strand, within HMPREF1078_RS08505at 278.485 kb on - strand, within HMPREF1078_RS08505at 278.596 kb on - strand, within HMPREF1078_RS08505at 278.631 kb on + strand, within HMPREF1078_RS08505at 278.655 kb on - strand, within HMPREF1078_RS08505at 278.657 kb on - strand, within HMPREF1078_RS08505at 278.712 kb on - strand, within HMPREF1078_RS08505at 278.745 kb on - strand, within HMPREF1078_RS08505at 278.748 kb on + strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.749 kb on - strand, within HMPREF1078_RS08505at 278.762 kb on + strand, within HMPREF1078_RS08505at 278.763 kb on - strand, within HMPREF1078_RS08505at 278.779 kb on + strand, within HMPREF1078_RS08505at 278.779 kb on + strand, within HMPREF1078_RS08505at 278.796 kb on + strand, within HMPREF1078_RS08505at 278.797 kb on - strand, within HMPREF1078_RS08505at 278.800 kb on + strand, within HMPREF1078_RS08505at 278.806 kb on + strand, within HMPREF1078_RS08505at 278.807 kb on - strand, within HMPREF1078_RS08505at 278.833 kb on + strand, within HMPREF1078_RS08505at 278.872 kb on + strand, within HMPREF1078_RS08505at 278.873 kb on - strand, within HMPREF1078_RS08505at 278.915 kb on + strand, within HMPREF1078_RS08505at 278.921 kb on + strand, within HMPREF1078_RS08505at 278.922 kb on - strand, within HMPREF1078_RS08505at 279.108 kb on - strand, within HMPREF1078_RS08505at 279.164 kb on + strand, within HMPREF1078_RS08505at 279.165 kb on - strand, within HMPREF1078_RS08505at 279.200 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.221 kb on + strand, within HMPREF1078_RS08505at 279.223 kb on + strand, within HMPREF1078_RS08505at 279.223 kb on + strand, within HMPREF1078_RS08505at 279.224 kb on - strand, within HMPREF1078_RS08505at 279.246 kb on + strand, within HMPREF1078_RS08505at 279.269 kb on - strand, within HMPREF1078_RS08505at 279.270 kb on + strand, within HMPREF1078_RS08505at 279.276 kb on - strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.277 kb on + strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.278 kb on - strand, within HMPREF1078_RS08505at 279.312 kb on - strand, within HMPREF1078_RS08505at 279.453 kb on + strand, within HMPREF1078_RS08505at 279.498 kb on - strand, within HMPREF1078_RS08505at 279.512 kb on - strand, within HMPREF1078_RS08505at 279.526 kb on + strand, within HMPREF1078_RS08505at 279.527 kb on - strand, within HMPREF1078_RS08505at 279.600 kb on - strand, within HMPREF1078_RS08505at 279.630 kb on - strand, within HMPREF1078_RS08505at 279.630 kb on - strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.699 kb on + strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.700 kb on - strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.703 kb on + strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.704 kb on - strand, within HMPREF1078_RS08505at 279.707 kb on + strand, within HMPREF1078_RS08505at 279.707 kb on + strand, within HMPREF1078_RS08505at 279.708 kb on - strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.727 kb on + strand, within HMPREF1078_RS08505at 279.728 kb on - strand, within HMPREF1078_RS08505at 279.728 kb on - strand, within HMPREF1078_RS08505at 279.732 kb on + strand, within HMPREF1078_RS08505at 279.732 kb on + strand, within HMPREF1078_RS08505at 279.733 kb on - strand, within HMPREF1078_RS08505at 279.774 kb on + strand, within HMPREF1078_RS08505at 279.816 kb on + strandat 279.839 kb on + strandat 279.858 kb on + strandat 279.859 kb on - strandat 279.862 kb on + strandat 279.862 kb on + strandat 279.863 kb on - strandat 279.875 kb on + strandat 279.879 kb on + strandat 279.879 kb on + strandat 279.880 kb on - strandat 279.908 kb on + strandat 279.909 kb on - strandat 279.923 kb on + strandat 279.924 kb on - strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.926 kb on + strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.927 kb on - strandat 279.938 kb on + strandat 279.949 kb on + strandat 279.957 kb on - strandat 279.960 kb on + strandat 279.961 kb on - strandat 280.038 kb on + strandat 280.038 kb on + strandat 280.038 kb on + strandat 280.039 kb on - strandat 280.079 kb on - strandat 280.125 kb on + strand, within HMPREF1078_RS08510at 280.162 kb on - strand, within HMPREF1078_RS08510at 280.185 kb on + strand, within HMPREF1078_RS08510at 280.186 kb on - strand, within HMPREF1078_RS08510at 280.186 kb on - strand, within HMPREF1078_RS08510at 280.281 kb on + strand, within HMPREF1078_RS08510at 280.296 kb on + strand, within HMPREF1078_RS08510at 280.297 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.314 kb on - strand, within HMPREF1078_RS08510at 280.341 kb on + strand, within HMPREF1078_RS08510at 280.413 kb on + strand, within HMPREF1078_RS08510at 280.413 kb on + strand, within HMPREF1078_RS08510at 280.414 kb on - strand, within HMPREF1078_RS08510at 280.418 kb on + strand, within HMPREF1078_RS08510at 280.445 kb on + strand, within HMPREF1078_RS08510at 280.446 kb on - strand, within HMPREF1078_RS08510at 280.491 kb on + strand, within HMPREF1078_RS08510at 280.502 kb on - strand, within HMPREF1078_RS08510at 280.550 kb on + strand, within HMPREF1078_RS08510at 280.551 kb on - strand, within HMPREF1078_RS08510at 280.581 kb on + strand, within HMPREF1078_RS08510at 280.767 kb on - strand, within HMPREF1078_RS08510at 280.880 kb on + strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.881 kb on - strand, within HMPREF1078_RS08510at 280.900 kb on - strand, within HMPREF1078_RS08510at 280.911 kb on + strand, within HMPREF1078_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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277,243 + HMPREF1078_RS08500 0.46 -0.3
277,243 + HMPREF1078_RS08500 0.46 -1.0
277,251 + HMPREF1078_RS08500 0.47 -1.1
277,252 - HMPREF1078_RS08500 0.47 -0.6
277,320 + HMPREF1078_RS08500 0.51 +2.4
277,321 - HMPREF1078_RS08500 0.51 -1.4
277,333 + HMPREF1078_RS08500 0.52 +0.9
277,333 + HMPREF1078_RS08500 0.52 +0.8
277,453 + HMPREF1078_RS08500 0.59 -1.8
277,497 - HMPREF1078_RS08500 0.62 +1.1
277,549 + HMPREF1078_RS08500 0.66 -0.7
277,549 + HMPREF1078_RS08500 0.66 +2.0
277,549 + HMPREF1078_RS08500 0.66 +0.4
277,549 + HMPREF1078_RS08500 0.66 -0.6
277,550 - HMPREF1078_RS08500 0.66 +0.4
277,550 - HMPREF1078_RS08500 0.66 +4.0
277,555 - HMPREF1078_RS08500 0.66 +0.1
277,555 - HMPREF1078_RS08500 0.66 -0.4
277,571 + HMPREF1078_RS08500 0.67 -1.7
277,571 + HMPREF1078_RS08500 0.67 -1.4
277,572 - HMPREF1078_RS08500 0.67 -1.1
277,572 - HMPREF1078_RS08500 0.67 +0.9
277,572 - HMPREF1078_RS08500 0.67 +1.9
277,575 + HMPREF1078_RS08500 0.67 -1.6
277,575 + HMPREF1078_RS08500 0.67 +0.9
277,575 + HMPREF1078_RS08500 0.67 +0.4
277,576 - HMPREF1078_RS08500 0.67 +0.9
277,576 - HMPREF1078_RS08500 0.67 +1.4
277,576 - HMPREF1078_RS08500 0.67 -1.5
277,576 - HMPREF1078_RS08500 0.67 -0.1
277,840 + HMPREF1078_RS08500 0.84 -0.4
277,855 + HMPREF1078_RS08500 0.85 +0.9
277,968 + +0.6
277,969 - -1.7
277,969 - -0.1
277,977 - +3.4
278,134 - +0.4
278,147 - -1.4
278,149 - +0.4
278,184 + +0.1
278,196 + -0.9
278,196 + -2.3
278,197 - -1.0
278,212 + -1.4
278,238 + +2.4
278,295 + -1.0
278,368 + -0.7
278,440 + HMPREF1078_RS08505 0.12 -0.4
278,441 - HMPREF1078_RS08505 0.12 +2.4
278,484 + HMPREF1078_RS08505 0.15 -1.7
278,485 - HMPREF1078_RS08505 0.15 -0.6
278,596 - HMPREF1078_RS08505 0.21 +0.1
278,631 + HMPREF1078_RS08505 0.23 -2.4
278,655 - HMPREF1078_RS08505 0.25 -0.6
278,657 - HMPREF1078_RS08505 0.25 +1.4
278,712 - HMPREF1078_RS08505 0.28 +0.4
278,745 - HMPREF1078_RS08505 0.30 +0.4
278,748 + HMPREF1078_RS08505 0.30 -1.3
278,749 - HMPREF1078_RS08505 0.30 -2.0
278,749 - HMPREF1078_RS08505 0.30 -0.7
278,749 - HMPREF1078_RS08505 0.30 -0.7
278,762 + HMPREF1078_RS08505 0.31 +0.1
278,763 - HMPREF1078_RS08505 0.31 -0.7
278,779 + HMPREF1078_RS08505 0.32 -0.4
278,779 + HMPREF1078_RS08505 0.32 +0.4
278,796 + HMPREF1078_RS08505 0.33 -0.2
278,797 - HMPREF1078_RS08505 0.33 -1.8
278,800 + HMPREF1078_RS08505 0.33 -0.2
278,806 + HMPREF1078_RS08505 0.33 +0.1
278,807 - HMPREF1078_RS08505 0.33 -1.5
278,833 + HMPREF1078_RS08505 0.35 -1.5
278,872 + HMPREF1078_RS08505 0.37 -0.2
278,873 - HMPREF1078_RS08505 0.37 +0.1
278,915 + HMPREF1078_RS08505 0.40 -0.4
278,921 + HMPREF1078_RS08505 0.40 +1.4
278,922 - HMPREF1078_RS08505 0.40 +0.1
279,108 - HMPREF1078_RS08505 0.51 +0.8
279,164 + HMPREF1078_RS08505 0.54 +0.8
279,165 - HMPREF1078_RS08505 0.54 -0.4
279,200 + HMPREF1078_RS08505 0.56 -2.3
279,221 + HMPREF1078_RS08505 0.57 -1.0
279,221 + HMPREF1078_RS08505 0.57 -1.7
279,221 + HMPREF1078_RS08505 0.57 +2.4
279,223 + HMPREF1078_RS08505 0.58 +1.4
279,223 + HMPREF1078_RS08505 0.58 -1.5
279,224 - HMPREF1078_RS08505 0.58 -0.7
279,246 + HMPREF1078_RS08505 0.59 -0.7
279,269 - HMPREF1078_RS08505 0.60 +0.1
279,270 + HMPREF1078_RS08505 0.60 +0.4
279,276 - HMPREF1078_RS08505 0.61 +0.1
279,277 + HMPREF1078_RS08505 0.61 +0.4
279,277 + HMPREF1078_RS08505 0.61 -1.4
279,277 + HMPREF1078_RS08505 0.61 -0.9
279,277 + HMPREF1078_RS08505 0.61 -0.2
279,278 - HMPREF1078_RS08505 0.61 -2.0
279,278 - HMPREF1078_RS08505 0.61 +0.1
279,278 - HMPREF1078_RS08505 0.61 -2.1
279,278 - HMPREF1078_RS08505 0.61 -1.8
279,312 - HMPREF1078_RS08505 0.63 -1.0
279,453 + HMPREF1078_RS08505 0.71 -0.4
279,498 - HMPREF1078_RS08505 0.74 -1.0
279,512 - HMPREF1078_RS08505 0.74 -1.3
279,526 + HMPREF1078_RS08505 0.75 -0.9
279,527 - HMPREF1078_RS08505 0.75 -2.2
279,600 - HMPREF1078_RS08505 0.80 -1.5
279,630 - HMPREF1078_RS08505 0.81 +1.4
279,630 - HMPREF1078_RS08505 0.81 +0.4
279,699 + HMPREF1078_RS08505 0.85 +1.4
279,699 + HMPREF1078_RS08505 0.85 -2.2
279,699 + HMPREF1078_RS08505 0.85 -2.2
279,699 + HMPREF1078_RS08505 0.85 +0.8
279,700 - HMPREF1078_RS08505 0.85 +1.4
279,700 - HMPREF1078_RS08505 0.85 -1.7
279,700 - HMPREF1078_RS08505 0.85 -2.2
279,700 - HMPREF1078_RS08505 0.85 -2.3
279,700 - HMPREF1078_RS08505 0.85 +0.8
279,700 - HMPREF1078_RS08505 0.85 -0.2
279,703 + HMPREF1078_RS08505 0.86 +2.4
279,703 + HMPREF1078_RS08505 0.86 -0.6
279,703 + HMPREF1078_RS08505 0.86 -2.3
279,703 + HMPREF1078_RS08505 0.86 -1.5
279,704 - HMPREF1078_RS08505 0.86 -1.6
279,704 - HMPREF1078_RS08505 0.86 +1.4
279,704 - HMPREF1078_RS08505 0.86 -0.4
279,704 - HMPREF1078_RS08505 0.86 +2.4
279,704 - HMPREF1078_RS08505 0.86 +0.4
279,707 + HMPREF1078_RS08505 0.86 -1.6
279,707 + HMPREF1078_RS08505 0.86 -1.0
279,708 - HMPREF1078_RS08505 0.86 -1.3
279,727 + HMPREF1078_RS08505 0.87 +2.4
279,727 + HMPREF1078_RS08505 0.87 -2.7
279,727 + HMPREF1078_RS08505 0.87 +0.1
279,728 - HMPREF1078_RS08505 0.87 -1.7
279,728 - HMPREF1078_RS08505 0.87 -1.3
279,732 + HMPREF1078_RS08505 0.87 -1.7
279,732 + HMPREF1078_RS08505 0.87 -0.4
279,733 - HMPREF1078_RS08505 0.87 -2.0
279,774 + HMPREF1078_RS08505 0.90 -1.3
279,816 + +1.4
279,839 + +1.4
279,858 + -1.3
279,859 - -1.3
279,862 + -0.4
279,862 + +2.4
279,863 - -1.8
279,875 + -0.1
279,879 + +0.4
279,879 + +1.4
279,880 - +0.1
279,908 + +0.1
279,909 - -0.6
279,923 + -0.9
279,924 - -0.1
279,926 + -1.0
279,926 + -1.7
279,926 + -1.1
279,926 + -1.8
279,926 + -1.7
279,927 - -1.8
279,927 - -2.4
279,927 - -3.0
279,927 - -0.7
279,938 + -2.6
279,949 + +2.0
279,957 - -0.3
279,960 + -0.5
279,961 - -1.3
280,038 + -1.8
280,038 + -0.5
280,038 + +0.9
280,039 - -0.1
280,079 - -2.3
280,125 + HMPREF1078_RS08510 0.13 -0.4
280,162 - HMPREF1078_RS08510 0.16 +0.4
280,185 + HMPREF1078_RS08510 0.17 -2.3
280,186 - HMPREF1078_RS08510 0.17 -1.5
280,186 - HMPREF1078_RS08510 0.17 +0.9
280,281 + HMPREF1078_RS08510 0.25 +0.4
280,296 + HMPREF1078_RS08510 0.26 +2.4
280,297 - HMPREF1078_RS08510 0.26 +1.4
280,314 - HMPREF1078_RS08510 0.27 +0.2
280,314 - HMPREF1078_RS08510 0.27 -0.0
280,314 - HMPREF1078_RS08510 0.27 +0.7
280,341 + HMPREF1078_RS08510 0.29 -0.1
280,413 + HMPREF1078_RS08510 0.34 +0.1
280,413 + HMPREF1078_RS08510 0.34 +3.0
280,414 - HMPREF1078_RS08510 0.34 -2.3
280,418 + HMPREF1078_RS08510 0.35 -0.6
280,445 + HMPREF1078_RS08510 0.37 +1.9
280,446 - HMPREF1078_RS08510 0.37 -1.4
280,491 + HMPREF1078_RS08510 0.40 -0.1
280,502 - HMPREF1078_RS08510 0.41 +0.3
280,550 + HMPREF1078_RS08510 0.45 -1.6
280,551 - HMPREF1078_RS08510 0.45 +0.2
280,581 + HMPREF1078_RS08510 0.47 -1.3
280,767 - HMPREF1078_RS08510 0.61 +0.0
280,880 + HMPREF1078_RS08510 0.69 +1.2
280,881 - HMPREF1078_RS08510 0.69 -0.3
280,881 - HMPREF1078_RS08510 0.69 -1.4
280,881 - HMPREF1078_RS08510 0.69 +0.1
280,900 - HMPREF1078_RS08510 0.71 +0.2
280,911 + HMPREF1078_RS08510 0.72 +0.4

Or see this region's nucleotide sequence