Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07850

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS07845 and HMPREF1078_RS07850 are separated by 30 nucleotidesHMPREF1078_RS07850 and HMPREF1078_RS07855 are separated by 149 nucleotides HMPREF1078_RS07845: HMPREF1078_RS07845 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 121,660 to 125,208 _RS07845 HMPREF1078_RS07850: HMPREF1078_RS07850 - AAA family ATPase, at 125,239 to 126,417 _RS07850 HMPREF1078_RS07855: HMPREF1078_RS07855 - branched-chain amino acid aminotransferase, at 126,567 to 127,586 _RS07855 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 124.240 kb on - strand, within HMPREF1078_RS07845at 124.388 kb on - strand, within HMPREF1078_RS07845at 124.434 kb on + strand, within HMPREF1078_RS07845at 124.435 kb on - strand, within HMPREF1078_RS07845at 124.464 kb on + strand, within HMPREF1078_RS07845at 124.467 kb on - strand, within HMPREF1078_RS07845at 124.500 kb on - strand, within HMPREF1078_RS07845at 124.765 kb on + strand, within HMPREF1078_RS07845at 124.814 kb on - strand, within HMPREF1078_RS07845at 124.814 kb on - strand, within HMPREF1078_RS07845at 124.837 kb on - strand, within HMPREF1078_RS07845at 124.860 kb on + strandat 124.871 kb on - strandat 124.871 kb on - strandat 124.953 kb on - strandat 124.953 kb on - strandat 125.035 kb on + strandat 125.036 kb on - strandat 125.058 kb on + strandat 125.087 kb on + strandat 125.145 kb on + strandat 125.154 kb on + strandat 125.154 kb on + strandat 125.209 kb on - strandat 125.217 kb on - strandat 125.220 kb on - strandat 125.226 kb on - strandat 125.245 kb on + strandat 125.246 kb on - strandat 125.310 kb on - strandat 125.310 kb on - strandat 125.313 kb on - strandat 125.326 kb on - strandat 125.378 kb on - strand, within HMPREF1078_RS07850at 125.413 kb on - strand, within HMPREF1078_RS07850at 125.413 kb on - strand, within HMPREF1078_RS07850at 125.422 kb on - strand, within HMPREF1078_RS07850at 125.433 kb on + strand, within HMPREF1078_RS07850at 125.463 kb on + strand, within HMPREF1078_RS07850at 125.464 kb on - strand, within HMPREF1078_RS07850at 125.464 kb on - strand, within HMPREF1078_RS07850at 125.490 kb on - strand, within HMPREF1078_RS07850at 125.506 kb on - strand, within HMPREF1078_RS07850at 125.507 kb on + strand, within HMPREF1078_RS07850at 125.507 kb on + strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.508 kb on - strand, within HMPREF1078_RS07850at 125.512 kb on - strand, within HMPREF1078_RS07850at 125.512 kb on - strand, within HMPREF1078_RS07850at 125.514 kb on - strand, within HMPREF1078_RS07850at 125.561 kb on - strand, within HMPREF1078_RS07850at 125.589 kb on - strand, within HMPREF1078_RS07850at 125.597 kb on + strand, within HMPREF1078_RS07850at 125.597 kb on + strand, within HMPREF1078_RS07850at 125.598 kb on - strand, within HMPREF1078_RS07850at 125.598 kb on - strand, within HMPREF1078_RS07850at 125.598 kb on - strand, within HMPREF1078_RS07850at 125.627 kb on - strand, within HMPREF1078_RS07850at 125.627 kb on - strand, within HMPREF1078_RS07850at 125.659 kb on - strand, within HMPREF1078_RS07850at 125.685 kb on - strand, within HMPREF1078_RS07850at 125.732 kb on - strand, within HMPREF1078_RS07850at 125.732 kb on - strand, within HMPREF1078_RS07850at 125.732 kb on - strand, within HMPREF1078_RS07850at 125.736 kb on - strand, within HMPREF1078_RS07850at 125.736 kb on - strand, within HMPREF1078_RS07850at 125.747 kb on - strand, within HMPREF1078_RS07850at 125.760 kb on + strand, within HMPREF1078_RS07850at 125.761 kb on - strand, within HMPREF1078_RS07850at 125.835 kb on - strand, within HMPREF1078_RS07850at 125.835 kb on - strand, within HMPREF1078_RS07850at 125.847 kb on - strand, within HMPREF1078_RS07850at 125.906 kb on - strand, within HMPREF1078_RS07850at 125.920 kb on - strand, within HMPREF1078_RS07850at 125.920 kb on - strand, within HMPREF1078_RS07850at 125.922 kb on - strand, within HMPREF1078_RS07850at 125.988 kb on - strand, within HMPREF1078_RS07850at 125.988 kb on - strand, within HMPREF1078_RS07850at 126.084 kb on - strand, within HMPREF1078_RS07850at 126.189 kb on + strand, within HMPREF1078_RS07850at 126.189 kb on + strand, within HMPREF1078_RS07850at 126.190 kb on - strand, within HMPREF1078_RS07850at 126.190 kb on - strand, within HMPREF1078_RS07850at 126.190 kb on - strand, within HMPREF1078_RS07850at 126.190 kb on - strand, within HMPREF1078_RS07850at 126.221 kb on - strand, within HMPREF1078_RS07850at 126.221 kb on - strand, within HMPREF1078_RS07850at 126.221 kb on - strand, within HMPREF1078_RS07850at 126.221 kb on - strand, within HMPREF1078_RS07850at 126.224 kb on + strand, within HMPREF1078_RS07850at 126.238 kb on - strand, within HMPREF1078_RS07850at 126.238 kb on - strand, within HMPREF1078_RS07850at 126.238 kb on - strand, within HMPREF1078_RS07850at 126.371 kb on + strandat 126.372 kb on - strandat 126.389 kb on + strandat 126.389 kb on + strandat 126.389 kb on + strandat 126.390 kb on - strandat 126.390 kb on - strandat 126.390 kb on - strandat 126.393 kb on + strandat 126.393 kb on + strandat 126.394 kb on - strandat 126.435 kb on - strandat 126.450 kb on - strandat 126.475 kb on - strandat 126.477 kb on - strandat 126.481 kb on - strandat 126.564 kb on + strandat 126.565 kb on - strandat 126.890 kb on - strand, within HMPREF1078_RS07855at 127.047 kb on - strand, within HMPREF1078_RS07855at 127.076 kb on - strand, within HMPREF1078_RS07855at 127.089 kb on - strand, within HMPREF1078_RS07855at 127.158 kb on - strand, within HMPREF1078_RS07855

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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124,240 - HMPREF1078_RS07845 0.73 +1.0
124,388 - HMPREF1078_RS07845 0.77 +1.0
124,434 + HMPREF1078_RS07845 0.78 +1.0
124,435 - HMPREF1078_RS07845 0.78 +1.0
124,464 + HMPREF1078_RS07845 0.79 +0.5
124,467 - HMPREF1078_RS07845 0.79 +1.5
124,500 - HMPREF1078_RS07845 0.80 +1.0
124,765 + HMPREF1078_RS07845 0.87 +1.0
124,814 - HMPREF1078_RS07845 0.89 -0.6
124,814 - HMPREF1078_RS07845 0.89 +0.5
124,837 - HMPREF1078_RS07845 0.90 +1.0
124,860 + -0.5
124,871 - +0.2
124,871 - +2.5
124,953 - +0.2
124,953 - +1.5
125,035 + -0.0
125,036 - +2.5
125,058 + -0.0
125,087 + +1.5
125,145 + -0.5
125,154 + -0.5
125,154 + +0.5
125,209 - +2.5
125,217 - +2.5
125,220 - +1.5
125,226 - +0.5
125,245 + +2.5
125,246 - -0.9
125,310 - -1.5
125,310 - +1.0
125,313 - -1.5
125,326 - +0.2
125,378 - HMPREF1078_RS07850 0.12 -1.3
125,413 - HMPREF1078_RS07850 0.15 +2.5
125,413 - HMPREF1078_RS07850 0.15 -0.5
125,422 - HMPREF1078_RS07850 0.16 -1.2
125,433 + HMPREF1078_RS07850 0.16 +2.5
125,463 + HMPREF1078_RS07850 0.19 -0.0
125,464 - HMPREF1078_RS07850 0.19 -0.8
125,464 - HMPREF1078_RS07850 0.19 -1.4
125,490 - HMPREF1078_RS07850 0.21 -1.2
125,506 - HMPREF1078_RS07850 0.23 -0.9
125,507 + HMPREF1078_RS07850 0.23 -0.0
125,507 + HMPREF1078_RS07850 0.23 +1.5
125,508 - HMPREF1078_RS07850 0.23 -1.9
125,508 - HMPREF1078_RS07850 0.23 -2.2
125,508 - HMPREF1078_RS07850 0.23 -0.5
125,508 - HMPREF1078_RS07850 0.23 -0.3
125,508 - HMPREF1078_RS07850 0.23 -1.0
125,508 - HMPREF1078_RS07850 0.23 -0.9
125,508 - HMPREF1078_RS07850 0.23 +0.2
125,508 - HMPREF1078_RS07850 0.23 -1.5
125,508 - HMPREF1078_RS07850 0.23 +0.2
125,512 - HMPREF1078_RS07850 0.23 -2.0
125,512 - HMPREF1078_RS07850 0.23 -0.8
125,514 - HMPREF1078_RS07850 0.23 -1.5
125,561 - HMPREF1078_RS07850 0.27 -0.5
125,589 - HMPREF1078_RS07850 0.30 -1.5
125,597 + HMPREF1078_RS07850 0.30 +2.5
125,597 + HMPREF1078_RS07850 0.30 +1.0
125,598 - HMPREF1078_RS07850 0.30 -1.4
125,598 - HMPREF1078_RS07850 0.30 -0.4
125,598 - HMPREF1078_RS07850 0.30 +1.0
125,627 - HMPREF1078_RS07850 0.33 -1.4
125,627 - HMPREF1078_RS07850 0.33 -0.5
125,659 - HMPREF1078_RS07850 0.36 -1.3
125,685 - HMPREF1078_RS07850 0.38 -0.5
125,732 - HMPREF1078_RS07850 0.42 +1.0
125,732 - HMPREF1078_RS07850 0.42 +1.5
125,732 - HMPREF1078_RS07850 0.42 -2.2
125,736 - HMPREF1078_RS07850 0.42 -0.0
125,736 - HMPREF1078_RS07850 0.42 -0.9
125,747 - HMPREF1078_RS07850 0.43 -1.0
125,760 + HMPREF1078_RS07850 0.44 +1.5
125,761 - HMPREF1078_RS07850 0.44 -0.5
125,835 - HMPREF1078_RS07850 0.51 -1.2
125,835 - HMPREF1078_RS07850 0.51 +0.2
125,847 - HMPREF1078_RS07850 0.52 -0.3
125,906 - HMPREF1078_RS07850 0.57 -1.3
125,920 - HMPREF1078_RS07850 0.58 +2.5
125,920 - HMPREF1078_RS07850 0.58 -2.4
125,922 - HMPREF1078_RS07850 0.58 -0.9
125,988 - HMPREF1078_RS07850 0.64 -2.2
125,988 - HMPREF1078_RS07850 0.64 -1.4
126,084 - HMPREF1078_RS07850 0.72 -1.5
126,189 + HMPREF1078_RS07850 0.81 -0.3
126,189 + HMPREF1078_RS07850 0.81 +0.5
126,190 - HMPREF1078_RS07850 0.81 -1.1
126,190 - HMPREF1078_RS07850 0.81 -2.0
126,190 - HMPREF1078_RS07850 0.81 -1.3
126,190 - HMPREF1078_RS07850 0.81 +0.2
126,221 - HMPREF1078_RS07850 0.83 -1.3
126,221 - HMPREF1078_RS07850 0.83 -0.9
126,221 - HMPREF1078_RS07850 0.83 +2.5
126,221 - HMPREF1078_RS07850 0.83 +0.2
126,224 + HMPREF1078_RS07850 0.84 +1.5
126,238 - HMPREF1078_RS07850 0.85 -0.8
126,238 - HMPREF1078_RS07850 0.85 -1.7
126,238 - HMPREF1078_RS07850 0.85 -1.6
126,371 + +1.0
126,372 - -0.0
126,389 + +2.5
126,389 + -0.3
126,389 + +1.0
126,390 - -0.0
126,390 - -2.5
126,390 - -1.0
126,393 + +1.5
126,393 + +0.5
126,394 - -2.1
126,435 - -0.3
126,450 - -0.3
126,475 - -1.0
126,477 - +2.5
126,481 - +1.3
126,564 + +0.7
126,565 - -0.3
126,890 - HMPREF1078_RS07855 0.32 +2.5
127,047 - HMPREF1078_RS07855 0.47 +3.9
127,076 - HMPREF1078_RS07855 0.50 +0.2
127,089 - HMPREF1078_RS07855 0.51 +3.5
127,158 - HMPREF1078_RS07855 0.58 +1.5

Or see this region's nucleotide sequence