Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07750 and HMPREF1078_RS07755 are separated by 26 nucleotides HMPREF1078_RS07755 and HMPREF1078_RS07760 are separated by 66 nucleotides HMPREF1078_RS07760 and HMPREF1078_RS07765 are separated by 97 nucleotides
HMPREF1078_RS07750: HMPREF1078_RS07750 - DNA-directed RNA polymerase subunit omega, at 94,821 to 95,153
_RS07750
HMPREF1078_RS07755: HMPREF1078_RS07755 - outer membrane protein assembly factor BamD, at 95,180 to 95,989
_RS07755
HMPREF1078_RS07760: HMPREF1078_RS07760 - hypothetical protein, at 96,056 to 96,481
_RS07760
HMPREF1078_RS07765: HMPREF1078_RS07765 - phenylacetate--CoA ligase, at 96,579 to 97,880
_RS07765
Position (kb) 96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 95.185 kb on - strand at 95.185 kb on - strand at 95.185 kb on - strand at 95.189 kb on - strand at 95.189 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.212 kb on - strand at 95.238 kb on - strand at 95.238 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.242 kb on - strand at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.269 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.275 kb on - strand, within HMPREF1078_RS07755 at 95.344 kb on - strand, within HMPREF1078_RS07755 at 96.032 kb on - strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.064 kb on + strand at 96.065 kb on - strand at 96.065 kb on - strand at 96.067 kb on - strand at 96.068 kb on + strand at 96.180 kb on + strand, within HMPREF1078_RS07760 at 96.181 kb on - strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.184 kb on + strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.185 kb on - strand, within HMPREF1078_RS07760 at 96.187 kb on - strand, within HMPREF1078_RS07760 at 96.212 kb on - strand, within HMPREF1078_RS07760 at 96.396 kb on - strand, within HMPREF1078_RS07760 at 96.446 kb on - strand at 96.460 kb on + strand at 96.465 kb on - strand at 96.473 kb on - strand at 96.476 kb on + strand at 96.476 kb on + strand at 96.477 kb on - strand at 96.477 kb on - strand at 96.501 kb on - strand at 96.503 kb on - strand at 96.515 kb on - strand at 96.528 kb on + strand at 96.657 kb on + strand at 96.658 kb on - strand at 96.658 kb on - strand at 96.678 kb on + strand at 96.678 kb on + strand at 96.689 kb on + strand at 96.690 kb on - strand at 96.762 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.870 kb on + strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.871 kb on - strand, within HMPREF1078_RS07765 at 96.888 kb on - strand, within HMPREF1078_RS07765 at 96.896 kb on + strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.897 kb on - strand, within HMPREF1078_RS07765 at 96.905 kb on + strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.939 kb on - strand, within HMPREF1078_RS07765 at 96.956 kb on + strand, within HMPREF1078_RS07765 at 96.957 kb on - strand, within HMPREF1078_RS07765 at 96.961 kb on + strand, within HMPREF1078_RS07765 at 97.001 kb on + strand, within HMPREF1078_RS07765 at 97.002 kb on - strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.184 kb on + strand, within HMPREF1078_RS07765 at 97.189 kb on + strand, within HMPREF1078_RS07765 at 97.291 kb on - strand, within HMPREF1078_RS07765 at 97.404 kb on - strand, within HMPREF1078_RS07765 at 97.478 kb on - strand, within HMPREF1078_RS07765
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 95,185 - -1.0 95,185 - -0.3 95,185 - -0.9 95,189 - -0.5 95,189 - -0.5 95,212 - -1.0 95,212 - -0.5 95,212 - -1.3 95,212 - -0.5 95,238 - -0.5 95,238 - -3.3 95,242 - -3.3 95,242 - -2.7 95,242 - -1.7 95,269 - HMPREF1078_RS07755 0.11 -3.2 95,269 - HMPREF1078_RS07755 0.11 -0.6 95,269 - HMPREF1078_RS07755 0.11 -2.2 95,269 - HMPREF1078_RS07755 0.11 -1.5 95,275 - HMPREF1078_RS07755 0.12 -1.3 95,275 - HMPREF1078_RS07755 0.12 -2.0 95,344 - HMPREF1078_RS07755 0.20 +0.2 96,032 - +1.0 96,064 + +1.2 96,064 + +1.5 96,064 + +0.5 96,065 - -2.0 96,065 - +0.5 96,067 - -1.7 96,068 + -0.6 96,180 + HMPREF1078_RS07760 0.29 +1.1 96,181 - HMPREF1078_RS07760 0.29 -2.5 96,184 + HMPREF1078_RS07760 0.30 -1.8 96,184 + HMPREF1078_RS07760 0.30 +0.2 96,184 + HMPREF1078_RS07760 0.30 +0.1 96,185 - HMPREF1078_RS07760 0.30 -1.5 96,185 - HMPREF1078_RS07760 0.30 -0.7 96,187 - HMPREF1078_RS07760 0.31 -1.5 96,212 - HMPREF1078_RS07760 0.37 -2.1 96,396 - HMPREF1078_RS07760 0.80 -1.6 96,446 - -3.0 96,460 + -0.0 96,465 - -0.5 96,473 - -0.3 96,476 + -0.5 96,476 + +1.5 96,477 - +0.5 96,477 - +1.0 96,501 - +1.0 96,503 - -0.8 96,515 - +1.5 96,528 + -0.0 96,657 + -1.4 96,658 - +0.5 96,658 - +2.1 96,678 + -0.0 96,678 + +1.0 96,689 + -0.7 96,690 - +1.0 96,762 + HMPREF1078_RS07765 0.14 -0.0 96,870 + HMPREF1078_RS07765 0.22 +0.5 96,870 + HMPREF1078_RS07765 0.22 +1.0 96,871 - HMPREF1078_RS07765 0.22 +0.5 96,871 - HMPREF1078_RS07765 0.22 -1.2 96,871 - HMPREF1078_RS07765 0.22 +0.2 96,888 - HMPREF1078_RS07765 0.24 +0.1 96,896 + HMPREF1078_RS07765 0.24 -1.4 96,897 - HMPREF1078_RS07765 0.24 +0.3 96,897 - HMPREF1078_RS07765 0.24 +3.1 96,905 + HMPREF1078_RS07765 0.25 -0.0 96,939 - HMPREF1078_RS07765 0.28 +1.5 96,939 - HMPREF1078_RS07765 0.28 -0.7 96,939 - HMPREF1078_RS07765 0.28 -0.5 96,956 + HMPREF1078_RS07765 0.29 -0.8 96,957 - HMPREF1078_RS07765 0.29 +1.0 96,961 + HMPREF1078_RS07765 0.29 -0.0 97,001 + HMPREF1078_RS07765 0.32 -0.0 97,002 - HMPREF1078_RS07765 0.32 -0.6 97,184 + HMPREF1078_RS07765 0.46 +1.5 97,184 + HMPREF1078_RS07765 0.46 -1.0 97,189 + HMPREF1078_RS07765 0.47 +0.5 97,291 - HMPREF1078_RS07765 0.55 -1.4 97,404 - HMPREF1078_RS07765 0.63 -1.0 97,478 - HMPREF1078_RS07765 0.69 -0.5
Or see this region's nucleotide sequence