Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07665 and HMPREF1078_RS07670 are separated by 141 nucleotides HMPREF1078_RS07670 and HMPREF1078_RS07675 overlap by 46 nucleotides HMPREF1078_RS07675 and HMPREF1078_RS07680 are separated by 132 nucleotides
HMPREF1078_RS07665: HMPREF1078_RS07665 - NADP-dependent malic enzyme, at 70,323 to 72,608
_RS07665
HMPREF1078_RS07670: HMPREF1078_RS07670 - MATE family efflux transporter, at 72,750 to 74,144
_RS07670
HMPREF1078_RS07675: HMPREF1078_RS07675 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 74,099 to 74,500
_RS07675
HMPREF1078_RS07680: HMPREF1078_RS07680 - TolC family protein, at 74,633 to 76,036
_RS07680
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 71.890 kb on - strand, within HMPREF1078_RS07665 at 72.043 kb on - strand, within HMPREF1078_RS07665 at 72.137 kb on - strand, within HMPREF1078_RS07665 at 72.137 kb on - strand, within HMPREF1078_RS07665 at 72.137 kb on - strand, within HMPREF1078_RS07665 at 72.137 kb on - strand, within HMPREF1078_RS07665 at 72.305 kb on - strand, within HMPREF1078_RS07665 at 72.305 kb on - strand, within HMPREF1078_RS07665 at 72.435 kb on + strand at 72.436 kb on - strand at 72.531 kb on - strand at 72.581 kb on - strand at 72.606 kb on + strand at 72.606 kb on + strand at 72.621 kb on + strand at 72.671 kb on + strand at 72.680 kb on - strand at 72.680 kb on - strand at 72.737 kb on - strand at 72.761 kb on + strand at 72.761 kb on + strand at 72.798 kb on - strand at 72.833 kb on + strand at 72.836 kb on - strand at 72.850 kb on - strand at 73.012 kb on - strand, within HMPREF1078_RS07670 at 73.012 kb on - strand, within HMPREF1078_RS07670 at 73.029 kb on + strand, within HMPREF1078_RS07670 at 73.093 kb on + strand, within HMPREF1078_RS07670 at 73.093 kb on + strand, within HMPREF1078_RS07670 at 73.094 kb on - strand, within HMPREF1078_RS07670 at 73.095 kb on + strand, within HMPREF1078_RS07670 at 73.119 kb on - strand, within HMPREF1078_RS07670 at 73.152 kb on + strand, within HMPREF1078_RS07670 at 73.152 kb on + strand, within HMPREF1078_RS07670 at 73.152 kb on + strand, within HMPREF1078_RS07670 at 73.153 kb on - strand, within HMPREF1078_RS07670 at 73.155 kb on + strand, within HMPREF1078_RS07670 at 73.155 kb on + strand, within HMPREF1078_RS07670 at 73.156 kb on - strand, within HMPREF1078_RS07670 at 73.156 kb on - strand, within HMPREF1078_RS07670 at 73.156 kb on - strand, within HMPREF1078_RS07670 at 73.159 kb on - strand, within HMPREF1078_RS07670 at 73.191 kb on - strand, within HMPREF1078_RS07670 at 73.191 kb on - strand, within HMPREF1078_RS07670 at 73.222 kb on + strand, within HMPREF1078_RS07670 at 73.390 kb on - strand, within HMPREF1078_RS07670 at 73.392 kb on - strand, within HMPREF1078_RS07670 at 73.395 kb on + strand, within HMPREF1078_RS07670 at 73.395 kb on + strand, within HMPREF1078_RS07670 at 73.396 kb on - strand, within HMPREF1078_RS07670 at 73.469 kb on - strand, within HMPREF1078_RS07670 at 73.471 kb on - strand, within HMPREF1078_RS07670 at 73.481 kb on - strand, within HMPREF1078_RS07670 at 73.484 kb on + strand, within HMPREF1078_RS07670 at 73.485 kb on - strand, within HMPREF1078_RS07670 at 73.628 kb on + strand, within HMPREF1078_RS07670 at 73.629 kb on - strand, within HMPREF1078_RS07670 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.644 kb on + strand, within HMPREF1078_RS07670 at 73.725 kb on + strand, within HMPREF1078_RS07670 at 73.742 kb on + strand, within HMPREF1078_RS07670 at 73.747 kb on + strand, within HMPREF1078_RS07670 at 73.771 kb on + strand, within HMPREF1078_RS07670 at 73.772 kb on - strand, within HMPREF1078_RS07670 at 73.772 kb on - strand, within HMPREF1078_RS07670 at 73.808 kb on - strand, within HMPREF1078_RS07670 at 73.823 kb on - strand, within HMPREF1078_RS07670 at 73.891 kb on + strand, within HMPREF1078_RS07670 at 73.891 kb on + strand, within HMPREF1078_RS07670 at 73.892 kb on - strand, within HMPREF1078_RS07670 at 73.964 kb on + strand, within HMPREF1078_RS07670 at 73.965 kb on - strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.968 kb on + strand, within HMPREF1078_RS07670 at 73.993 kb on + strand, within HMPREF1078_RS07670 at 73.994 kb on - strand, within HMPREF1078_RS07670 at 74.026 kb on + strand at 74.059 kb on + strand at 74.059 kb on + strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.060 kb on - strand at 74.061 kb on + strand at 74.061 kb on + strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.062 kb on - strand at 74.068 kb on - strand at 74.100 kb on + strand at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.165 kb on - strand, within HMPREF1078_RS07675 at 74.180 kb on + strand, within HMPREF1078_RS07675 at 74.180 kb on + strand, within HMPREF1078_RS07675 at 74.181 kb on - strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.185 kb on + strand, within HMPREF1078_RS07675 at 74.186 kb on - strand, within HMPREF1078_RS07675 at 74.186 kb on - strand, within HMPREF1078_RS07675 at 74.194 kb on + strand, within HMPREF1078_RS07675 at 74.197 kb on - strand, within HMPREF1078_RS07675 at 74.197 kb on - strand, within HMPREF1078_RS07675 at 74.394 kb on - strand, within HMPREF1078_RS07675 at 74.401 kb on + strand, within HMPREF1078_RS07675 at 74.404 kb on - strand, within HMPREF1078_RS07675 at 74.404 kb on - strand, within HMPREF1078_RS07675 at 74.482 kb on - strand at 74.482 kb on - strand at 74.532 kb on - strand at 74.532 kb on - strand at 74.548 kb on - strand at 74.550 kb on - strand at 74.587 kb on - strand at 74.606 kb on + strand at 74.633 kb on - strand at 74.640 kb on + strand at 74.640 kb on + strand at 74.641 kb on - strand at 74.641 kb on - strand at 74.641 kb on - strand at 74.644 kb on + strand at 74.644 kb on + strand at 74.645 kb on - strand at 74.645 kb on - strand at 74.645 kb on - strand at 74.711 kb on + strand at 74.711 kb on + strand at 74.907 kb on + strand, within HMPREF1078_RS07680 at 74.907 kb on + strand, within HMPREF1078_RS07680 at 74.908 kb on - strand, within HMPREF1078_RS07680 at 74.917 kb on + strand, within HMPREF1078_RS07680 at 74.917 kb on + strand, within HMPREF1078_RS07680 at 74.918 kb on - strand, within HMPREF1078_RS07680 at 74.921 kb on + strand, within HMPREF1078_RS07680 at 74.969 kb on - strand, within HMPREF1078_RS07680 at 74.977 kb on + strand, within HMPREF1078_RS07680 at 74.977 kb on + strand, within HMPREF1078_RS07680 at 75.028 kb on + strand, within HMPREF1078_RS07680 at 75.028 kb on + strand, within HMPREF1078_RS07680 at 75.114 kb on - strand, within HMPREF1078_RS07680
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 71,890 - HMPREF1078_RS07665 0.69 -0.3 72,043 - HMPREF1078_RS07665 0.75 -1.0 72,137 - HMPREF1078_RS07665 0.79 -0.6 72,137 - HMPREF1078_RS07665 0.79 +0.0 72,137 - HMPREF1078_RS07665 0.79 -0.8 72,137 - HMPREF1078_RS07665 0.79 +0.5 72,305 - HMPREF1078_RS07665 0.87 -0.2 72,305 - HMPREF1078_RS07665 0.87 -0.0 72,435 + -1.6 72,436 - +2.9 72,531 - +3.3 72,581 - -1.5 72,606 + -0.8 72,606 + -0.9 72,621 + -0.0 72,671 + +1.0 72,680 - -1.4 72,680 - +0.5 72,737 - +1.5 72,761 + -1.0 72,761 + +0.2 72,798 - +2.5 72,833 + -0.0 72,836 - -0.9 72,850 - -0.9 73,012 - HMPREF1078_RS07670 0.19 +1.5 73,012 - HMPREF1078_RS07670 0.19 -0.3 73,029 + HMPREF1078_RS07670 0.20 -0.8 73,093 + HMPREF1078_RS07670 0.25 -0.0 73,093 + HMPREF1078_RS07670 0.25 -1.5 73,094 - HMPREF1078_RS07670 0.25 -0.5 73,095 + HMPREF1078_RS07670 0.25 -0.0 73,119 - HMPREF1078_RS07670 0.26 +1.0 73,152 + HMPREF1078_RS07670 0.29 +1.5 73,152 + HMPREF1078_RS07670 0.29 -0.9 73,152 + HMPREF1078_RS07670 0.29 -2.8 73,153 - HMPREF1078_RS07670 0.29 -0.5 73,155 + HMPREF1078_RS07670 0.29 -0.3 73,155 + HMPREF1078_RS07670 0.29 -0.5 73,156 - HMPREF1078_RS07670 0.29 -1.2 73,156 - HMPREF1078_RS07670 0.29 +0.2 73,156 - HMPREF1078_RS07670 0.29 -1.7 73,159 - HMPREF1078_RS07670 0.29 -2.5 73,191 - HMPREF1078_RS07670 0.32 -0.8 73,191 - HMPREF1078_RS07670 0.32 -0.6 73,222 + HMPREF1078_RS07670 0.34 +1.0 73,390 - HMPREF1078_RS07670 0.46 +1.2 73,392 - HMPREF1078_RS07670 0.46 -0.0 73,395 + HMPREF1078_RS07670 0.46 +0.5 73,395 + HMPREF1078_RS07670 0.46 -1.9 73,396 - HMPREF1078_RS07670 0.46 -0.5 73,469 - HMPREF1078_RS07670 0.52 -0.3 73,471 - HMPREF1078_RS07670 0.52 -1.5 73,481 - HMPREF1078_RS07670 0.52 -0.8 73,484 + HMPREF1078_RS07670 0.53 -1.2 73,485 - HMPREF1078_RS07670 0.53 +1.5 73,628 + HMPREF1078_RS07670 0.63 -0.5 73,629 - HMPREF1078_RS07670 0.63 -1.5 73,644 + HMPREF1078_RS07670 0.64 -0.3 73,644 + HMPREF1078_RS07670 0.64 -0.3 73,644 + HMPREF1078_RS07670 0.64 -2.9 73,725 + HMPREF1078_RS07670 0.70 -1.6 73,742 + HMPREF1078_RS07670 0.71 -0.8 73,747 + HMPREF1078_RS07670 0.71 -0.5 73,771 + HMPREF1078_RS07670 0.73 +0.2 73,772 - HMPREF1078_RS07670 0.73 -1.2 73,772 - HMPREF1078_RS07670 0.73 -0.8 73,808 - HMPREF1078_RS07670 0.76 +0.2 73,823 - HMPREF1078_RS07670 0.77 -1.0 73,891 + HMPREF1078_RS07670 0.82 -1.2 73,891 + HMPREF1078_RS07670 0.82 +1.0 73,892 - HMPREF1078_RS07670 0.82 -1.7 73,964 + HMPREF1078_RS07670 0.87 -0.8 73,965 - HMPREF1078_RS07670 0.87 -0.5 73,968 + HMPREF1078_RS07670 0.87 +1.4 73,968 + HMPREF1078_RS07670 0.87 -0.9 73,968 + HMPREF1078_RS07670 0.87 -0.6 73,993 + HMPREF1078_RS07670 0.89 -2.5 73,994 - HMPREF1078_RS07670 0.89 +2.5 74,026 + +1.5 74,059 + +1.0 74,059 + -0.9 74,060 - -0.8 74,060 - -0.5 74,060 - -1.3 74,060 - -0.9 74,060 - -2.0 74,061 + -0.8 74,061 + +0.2 74,062 - -1.3 74,062 - -1.4 74,062 - +0.2 74,062 - -0.5 74,062 - -1.2 74,062 - -1.5 74,062 - -1.4 74,062 - -0.5 74,062 - -0.8 74,062 - +1.5 74,068 - -0.0 74,100 + +1.5 74,165 - HMPREF1078_RS07675 0.16 -1.0 74,165 - HMPREF1078_RS07675 0.16 +1.3 74,165 - HMPREF1078_RS07675 0.16 +0.2 74,165 - HMPREF1078_RS07675 0.16 -0.5 74,180 + HMPREF1078_RS07675 0.20 +2.5 74,180 + HMPREF1078_RS07675 0.20 +0.2 74,181 - HMPREF1078_RS07675 0.20 -1.0 74,185 + HMPREF1078_RS07675 0.21 +1.4 74,185 + HMPREF1078_RS07675 0.21 -1.7 74,185 + HMPREF1078_RS07675 0.21 -0.0 74,185 + HMPREF1078_RS07675 0.21 +1.0 74,186 - HMPREF1078_RS07675 0.22 -0.0 74,186 - HMPREF1078_RS07675 0.22 +1.0 74,194 + HMPREF1078_RS07675 0.24 +1.5 74,197 - HMPREF1078_RS07675 0.24 +0.5 74,197 - HMPREF1078_RS07675 0.24 +1.5 74,394 - HMPREF1078_RS07675 0.73 +1.5 74,401 + HMPREF1078_RS07675 0.75 +0.5 74,404 - HMPREF1078_RS07675 0.76 +1.5 74,404 - HMPREF1078_RS07675 0.76 -0.5 74,482 - -1.1 74,482 - -0.3 74,532 - +0.5 74,532 - +0.5 74,548 - -0.0 74,550 - +1.0 74,587 - -0.8 74,606 + +1.0 74,633 - +2.5 74,640 + +0.7 74,640 + +0.2 74,641 - +2.3 74,641 - -0.6 74,641 - +1.1 74,644 + -0.7 74,644 + +4.1 74,645 - -0.3 74,645 - +2.5 74,645 - +2.3 74,711 + +1.3 74,711 + -2.2 74,907 + HMPREF1078_RS07680 0.20 +1.0 74,907 + HMPREF1078_RS07680 0.20 +1.0 74,908 - HMPREF1078_RS07680 0.20 +0.7 74,917 + HMPREF1078_RS07680 0.20 -1.3 74,917 + HMPREF1078_RS07680 0.20 -1.0 74,918 - HMPREF1078_RS07680 0.20 +0.2 74,921 + HMPREF1078_RS07680 0.21 -0.3 74,969 - HMPREF1078_RS07680 0.24 +2.9 74,977 + HMPREF1078_RS07680 0.25 -0.8 74,977 + HMPREF1078_RS07680 0.25 -2.8 75,028 + HMPREF1078_RS07680 0.28 +3.5 75,028 + HMPREF1078_RS07680 0.28 -0.3 75,114 - HMPREF1078_RS07680 0.34 +0.2
Or see this region's nucleotide sequence