Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05835 and HMPREF1078_RS05840 are separated by 54 nucleotides HMPREF1078_RS05840 and HMPREF1078_RS05845 are separated by 56 nucleotides
HMPREF1078_RS05835: HMPREF1078_RS05835 - M20 family metallo-hydrolase, at 493,802 to 494,857
_RS05835
HMPREF1078_RS05840: HMPREF1078_RS05840 - lipopolysaccharide biosynthesis protein, at 494,912 to 496,201
_RS05840
HMPREF1078_RS05845: HMPREF1078_RS05845 - peptidoglycan DD-metalloendopeptidase family protein, at 496,258 to 497,589
_RS05845
Position (kb) 494
495
496
497 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 493.915 kb on + strand, within HMPREF1078_RS05835 at 494.139 kb on + strand, within HMPREF1078_RS05835 at 494.596 kb on - strand, within HMPREF1078_RS05835 at 494.729 kb on + strand, within HMPREF1078_RS05835 at 494.782 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.819 kb on + strand at 494.820 kb on - strand at 494.822 kb on - strand at 494.856 kb on + strand at 494.889 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.911 kb on + strand at 494.912 kb on - strand at 494.982 kb on + strand at 495.040 kb on - strand at 495.042 kb on + strand, within HMPREF1078_RS05840 at 495.043 kb on - strand, within HMPREF1078_RS05840 at 495.083 kb on - strand, within HMPREF1078_RS05840 at 495.138 kb on - strand, within HMPREF1078_RS05840 at 495.224 kb on + strand, within HMPREF1078_RS05840 at 495.225 kb on - strand, within HMPREF1078_RS05840 at 495.331 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.346 kb on - strand, within HMPREF1078_RS05840 at 495.348 kb on + strand, within HMPREF1078_RS05840 at 495.356 kb on + strand, within HMPREF1078_RS05840 at 495.372 kb on + strand, within HMPREF1078_RS05840 at 495.373 kb on - strand, within HMPREF1078_RS05840 at 495.405 kb on - strand, within HMPREF1078_RS05840 at 495.500 kb on + strand, within HMPREF1078_RS05840 at 495.554 kb on + strand, within HMPREF1078_RS05840 at 495.667 kb on + strand, within HMPREF1078_RS05840 at 495.695 kb on + strand, within HMPREF1078_RS05840 at 495.894 kb on + strand, within HMPREF1078_RS05840 at 495.915 kb on + strand, within HMPREF1078_RS05840 at 495.915 kb on + strand, within HMPREF1078_RS05840 at 495.954 kb on - strand, within HMPREF1078_RS05840 at 496.023 kb on - strand, within HMPREF1078_RS05840 at 496.211 kb on + strand at 496.212 kb on - strand at 496.212 kb on - strand at 496.401 kb on - strand, within HMPREF1078_RS05845 at 496.420 kb on - strand, within HMPREF1078_RS05845 at 496.420 kb on - strand, within HMPREF1078_RS05845 at 496.420 kb on - strand, within HMPREF1078_RS05845 at 496.422 kb on - strand, within HMPREF1078_RS05845 at 496.423 kb on + strand, within HMPREF1078_RS05845 at 496.423 kb on + strand, within HMPREF1078_RS05845 at 496.424 kb on - strand, within HMPREF1078_RS05845 at 496.424 kb on - strand, within HMPREF1078_RS05845 at 496.424 kb on - strand, within HMPREF1078_RS05845 at 496.547 kb on - strand, within HMPREF1078_RS05845 at 496.563 kb on + strand, within HMPREF1078_RS05845 at 496.572 kb on - strand, within HMPREF1078_RS05845 at 496.618 kb on - strand, within HMPREF1078_RS05845 at 496.618 kb on - strand, within HMPREF1078_RS05845 at 497.045 kb on - strand, within HMPREF1078_RS05845 at 497.110 kb on - strand, within HMPREF1078_RS05845
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 493,915 + HMPREF1078_RS05835 0.11 +0.2 494,139 + HMPREF1078_RS05835 0.32 -0.9 494,596 - HMPREF1078_RS05835 0.75 -2.4 494,729 + HMPREF1078_RS05835 0.88 -1.0 494,782 + -1.3 494,819 + -1.4 494,819 + -0.5 494,819 + -2.6 494,820 - -2.8 494,822 - +0.2 494,856 + +0.4 494,889 + -1.5 494,911 + -0.6 494,911 + -2.5 494,911 + -0.2 494,912 - +0.6 494,982 + -3.1 495,040 - +0.6 495,042 + HMPREF1078_RS05840 0.10 -2.0 495,043 - HMPREF1078_RS05840 0.10 -2.2 495,083 - HMPREF1078_RS05840 0.13 -1.9 495,138 - HMPREF1078_RS05840 0.18 +0.6 495,224 + HMPREF1078_RS05840 0.24 -2.8 495,225 - HMPREF1078_RS05840 0.24 -2.1 495,331 - HMPREF1078_RS05840 0.32 -3.3 495,346 - HMPREF1078_RS05840 0.34 +0.6 495,346 - HMPREF1078_RS05840 0.34 +0.2 495,348 + HMPREF1078_RS05840 0.34 -3.2 495,356 + HMPREF1078_RS05840 0.34 -1.3 495,372 + HMPREF1078_RS05840 0.36 -2.0 495,373 - HMPREF1078_RS05840 0.36 -4.1 495,405 - HMPREF1078_RS05840 0.38 -1.9 495,500 + HMPREF1078_RS05840 0.46 -2.0 495,554 + HMPREF1078_RS05840 0.50 -1.9 495,667 + HMPREF1078_RS05840 0.59 -0.2 495,695 + HMPREF1078_RS05840 0.61 -2.8 495,894 + HMPREF1078_RS05840 0.76 +0.2 495,915 + HMPREF1078_RS05840 0.78 -2.6 495,915 + HMPREF1078_RS05840 0.78 -3.3 495,954 - HMPREF1078_RS05840 0.81 -2.5 496,023 - HMPREF1078_RS05840 0.86 -4.6 496,211 + -1.5 496,212 - -0.1 496,212 - +2.2 496,401 - HMPREF1078_RS05845 0.11 -2.7 496,420 - HMPREF1078_RS05845 0.12 +0.2 496,420 - HMPREF1078_RS05845 0.12 -0.8 496,420 - HMPREF1078_RS05845 0.12 -2.7 496,422 - HMPREF1078_RS05845 0.12 +0.6 496,423 + HMPREF1078_RS05845 0.12 -0.3 496,423 + HMPREF1078_RS05845 0.12 +0.6 496,424 - HMPREF1078_RS05845 0.12 +1.9 496,424 - HMPREF1078_RS05845 0.12 -1.7 496,424 - HMPREF1078_RS05845 0.12 +0.9 496,547 - HMPREF1078_RS05845 0.22 +0.6 496,563 + HMPREF1078_RS05845 0.23 -0.3 496,572 - HMPREF1078_RS05845 0.24 -2.3 496,618 - HMPREF1078_RS05845 0.27 -0.6 496,618 - HMPREF1078_RS05845 0.27 +0.6 497,045 - HMPREF1078_RS05845 0.59 -0.1 497,110 - HMPREF1078_RS05845 0.64 +0.1
Or see this region's nucleotide sequence