Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05555 and HMPREF1078_RS05560 overlap by 62 nucleotides HMPREF1078_RS05560 and HMPREF1078_RS05565 are separated by 3 nucleotides
HMPREF1078_RS05555: HMPREF1078_RS05555 - Ig-like domain-containing protein, at 403,751 to 405,667
_RS05555
HMPREF1078_RS05560: HMPREF1078_RS05560 - DUF3108 domain-containing protein, at 405,606 to 406,493
_RS05560
HMPREF1078_RS05565: HMPREF1078_RS05565 - ATP-binding protein, at 406,497 to 407,549
_RS05565
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 405.565 kb on + strand at 405.634 kb on + strand at 405.775 kb on - strand, within HMPREF1078_RS05560 at 405.781 kb on + strand, within HMPREF1078_RS05560 at 405.781 kb on + strand, within HMPREF1078_RS05560 at 405.782 kb on - strand, within HMPREF1078_RS05560 at 405.783 kb on + strand, within HMPREF1078_RS05560 at 405.867 kb on + strand, within HMPREF1078_RS05560 at 405.917 kb on + strand, within HMPREF1078_RS05560 at 405.918 kb on - strand, within HMPREF1078_RS05560 at 405.930 kb on - strand, within HMPREF1078_RS05560 at 406.000 kb on - strand, within HMPREF1078_RS05560 at 406.000 kb on - strand, within HMPREF1078_RS05560 at 406.003 kb on - strand, within HMPREF1078_RS05560 at 406.003 kb on - strand, within HMPREF1078_RS05560 at 406.009 kb on + strand, within HMPREF1078_RS05560 at 406.045 kb on + strand, within HMPREF1078_RS05560 at 406.046 kb on - strand, within HMPREF1078_RS05560 at 406.068 kb on - strand, within HMPREF1078_RS05560 at 406.146 kb on + strand, within HMPREF1078_RS05560 at 406.146 kb on + strand, within HMPREF1078_RS05560 at 406.147 kb on - strand, within HMPREF1078_RS05560 at 406.284 kb on + strand, within HMPREF1078_RS05560 at 406.285 kb on - strand, within HMPREF1078_RS05560 at 406.321 kb on + strand, within HMPREF1078_RS05560 at 406.393 kb on + strand, within HMPREF1078_RS05560 at 406.506 kb on + strand at 406.652 kb on + strand, within HMPREF1078_RS05565 at 406.659 kb on + strand, within HMPREF1078_RS05565 at 406.659 kb on + strand, within HMPREF1078_RS05565 at 406.925 kb on - strand, within HMPREF1078_RS05565 at 407.025 kb on - strand, within HMPREF1078_RS05565 at 407.197 kb on + strand, within HMPREF1078_RS05565 at 407.259 kb on + strand, within HMPREF1078_RS05565 at 407.321 kb on - strand, within HMPREF1078_RS05565 at 407.392 kb on + strand, within HMPREF1078_RS05565 at 407.393 kb on - strand, within HMPREF1078_RS05565 at 407.445 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 405,565 + -0.8 405,634 + -1.3 405,775 - HMPREF1078_RS05560 0.19 -2.1 405,781 + HMPREF1078_RS05560 0.20 -2.0 405,781 + HMPREF1078_RS05560 0.20 -1.7 405,782 - HMPREF1078_RS05560 0.20 -0.5 405,783 + HMPREF1078_RS05560 0.20 -0.8 405,867 + HMPREF1078_RS05560 0.29 -2.3 405,917 + HMPREF1078_RS05560 0.35 +0.6 405,918 - HMPREF1078_RS05560 0.35 -2.9 405,930 - HMPREF1078_RS05560 0.36 -0.6 406,000 - HMPREF1078_RS05560 0.44 -0.6 406,000 - HMPREF1078_RS05560 0.44 -0.4 406,003 - HMPREF1078_RS05560 0.45 -2.6 406,003 - HMPREF1078_RS05560 0.45 -2.2 406,009 + HMPREF1078_RS05560 0.45 -2.8 406,045 + HMPREF1078_RS05560 0.49 -1.4 406,046 - HMPREF1078_RS05560 0.50 -2.3 406,068 - HMPREF1078_RS05560 0.52 -2.9 406,146 + HMPREF1078_RS05560 0.61 -2.6 406,146 + HMPREF1078_RS05560 0.61 +0.6 406,147 - HMPREF1078_RS05560 0.61 -1.3 406,284 + HMPREF1078_RS05560 0.76 -1.4 406,285 - HMPREF1078_RS05560 0.76 -0.6 406,321 + HMPREF1078_RS05560 0.81 -2.3 406,393 + HMPREF1078_RS05560 0.89 -3.0 406,506 + +0.1 406,652 + HMPREF1078_RS05565 0.15 -1.0 406,659 + HMPREF1078_RS05565 0.15 -0.4 406,659 + HMPREF1078_RS05565 0.15 -0.1 406,925 - HMPREF1078_RS05565 0.41 -0.5 407,025 - HMPREF1078_RS05565 0.50 -1.1 407,197 + HMPREF1078_RS05565 0.66 -1.3 407,259 + HMPREF1078_RS05565 0.72 -0.9 407,321 - HMPREF1078_RS05565 0.78 -2.3 407,392 + HMPREF1078_RS05565 0.85 -0.4 407,393 - HMPREF1078_RS05565 0.85 -0.3 407,445 + -0.6
Or see this region's nucleotide sequence