Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05340

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS05335 and HMPREF1078_RS05340 overlap by 4 nucleotidesHMPREF1078_RS05340 and HMPREF1078_RS05345 overlap by 1 nucleotides HMPREF1078_RS05335: HMPREF1078_RS05335 - DNA-processing protein DprA, at 340,581 to 341,696 _RS05335 HMPREF1078_RS05340: HMPREF1078_RS05340 - acyl-CoA thioesterase, at 341,693 to 342,100 _RS05340 HMPREF1078_RS05345: HMPREF1078_RS05345 - peptidase U32 family protein, at 342,100 to 343,371 _RS05345 Position (kb) 341 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 340.701 kb on - strand, within HMPREF1078_RS05335at 340.701 kb on - strand, within HMPREF1078_RS05335at 340.725 kb on - strand, within HMPREF1078_RS05335at 340.799 kb on + strand, within HMPREF1078_RS05335at 340.931 kb on + strand, within HMPREF1078_RS05335at 340.931 kb on + strand, within HMPREF1078_RS05335at 340.932 kb on - strand, within HMPREF1078_RS05335at 340.933 kb on + strand, within HMPREF1078_RS05335at 340.934 kb on - strand, within HMPREF1078_RS05335at 340.948 kb on + strand, within HMPREF1078_RS05335at 341.012 kb on + strand, within HMPREF1078_RS05335at 341.012 kb on + strand, within HMPREF1078_RS05335at 341.076 kb on - strand, within HMPREF1078_RS05335at 341.130 kb on - strand, within HMPREF1078_RS05335at 341.153 kb on + strand, within HMPREF1078_RS05335at 341.153 kb on + strand, within HMPREF1078_RS05335at 341.154 kb on - strand, within HMPREF1078_RS05335at 341.154 kb on - strand, within HMPREF1078_RS05335at 341.154 kb on - strand, within HMPREF1078_RS05335at 341.154 kb on - strand, within HMPREF1078_RS05335at 341.225 kb on + strand, within HMPREF1078_RS05335at 341.289 kb on + strand, within HMPREF1078_RS05335at 341.291 kb on + strand, within HMPREF1078_RS05335at 341.318 kb on - strand, within HMPREF1078_RS05335at 341.345 kb on + strand, within HMPREF1078_RS05335at 341.346 kb on - strand, within HMPREF1078_RS05335at 341.376 kb on - strand, within HMPREF1078_RS05335at 341.385 kb on - strand, within HMPREF1078_RS05335at 341.452 kb on + strand, within HMPREF1078_RS05335at 341.452 kb on + strand, within HMPREF1078_RS05335at 341.453 kb on - strand, within HMPREF1078_RS05335at 341.540 kb on + strand, within HMPREF1078_RS05335at 341.540 kb on + strand, within HMPREF1078_RS05335at 341.540 kb on + strand, within HMPREF1078_RS05335at 341.541 kb on - strand, within HMPREF1078_RS05335at 341.639 kb on + strandat 341.640 kb on - strandat 341.656 kb on - strandat 341.661 kb on - strandat 341.661 kb on - strandat 341.663 kb on + strandat 341.664 kb on - strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.698 kb on + strandat 341.699 kb on - strandat 341.699 kb on - strandat 341.699 kb on - strandat 341.699 kb on - strandat 341.699 kb on - strandat 341.699 kb on - strandat 341.706 kb on - strandat 341.812 kb on + strand, within HMPREF1078_RS05340at 341.813 kb on - strand, within HMPREF1078_RS05340at 341.814 kb on + strand, within HMPREF1078_RS05340at 341.814 kb on + strand, within HMPREF1078_RS05340at 341.814 kb on + strand, within HMPREF1078_RS05340at 341.814 kb on + strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.815 kb on - strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.816 kb on + strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.817 kb on - strand, within HMPREF1078_RS05340at 341.818 kb on + strand, within HMPREF1078_RS05340at 341.872 kb on + strand, within HMPREF1078_RS05340at 341.872 kb on + strand, within HMPREF1078_RS05340at 341.873 kb on + strand, within HMPREF1078_RS05340at 341.873 kb on - strand, within HMPREF1078_RS05340at 341.873 kb on - strand, within HMPREF1078_RS05340at 341.873 kb on - strand, within HMPREF1078_RS05340at 341.873 kb on - strand, within HMPREF1078_RS05340at 341.873 kb on - strand, within HMPREF1078_RS05340at 341.874 kb on + strand, within HMPREF1078_RS05340at 341.902 kb on + strand, within HMPREF1078_RS05340at 341.902 kb on + strand, within HMPREF1078_RS05340at 341.903 kb on - strand, within HMPREF1078_RS05340at 341.903 kb on - strand, within HMPREF1078_RS05340at 341.904 kb on + strand, within HMPREF1078_RS05340at 341.904 kb on + strand, within HMPREF1078_RS05340at 341.905 kb on - strand, within HMPREF1078_RS05340at 341.998 kb on + strand, within HMPREF1078_RS05340at 341.998 kb on + strand, within HMPREF1078_RS05340at 341.999 kb on - strand, within HMPREF1078_RS05340at 341.999 kb on - strand, within HMPREF1078_RS05340at 342.007 kb on + strand, within HMPREF1078_RS05340at 342.007 kb on + strand, within HMPREF1078_RS05340at 342.007 kb on + strand, within HMPREF1078_RS05340at 342.007 kb on + strand, within HMPREF1078_RS05340at 342.007 kb on + strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.008 kb on - strand, within HMPREF1078_RS05340at 342.019 kb on - strand, within HMPREF1078_RS05340at 342.058 kb on - strand, within HMPREF1078_RS05340at 342.089 kb on - strandat 342.090 kb on + strandat 342.110 kb on - strandat 342.140 kb on + strandat 342.140 kb on + strandat 342.141 kb on - strandat 342.371 kb on + strand, within HMPREF1078_RS05345at 342.371 kb on + strand, within HMPREF1078_RS05345at 342.371 kb on + strand, within HMPREF1078_RS05345at 342.371 kb on + strand, within HMPREF1078_RS05345at 342.371 kb on + strand, within HMPREF1078_RS05345at 342.372 kb on - strand, within HMPREF1078_RS05345at 342.372 kb on - strand, within HMPREF1078_RS05345at 342.372 kb on - strand, within HMPREF1078_RS05345at 342.372 kb on - strand, within HMPREF1078_RS05345at 342.401 kb on + strand, within HMPREF1078_RS05345at 342.402 kb on - strand, within HMPREF1078_RS05345at 342.402 kb on - strand, within HMPREF1078_RS05345at 342.440 kb on + strand, within HMPREF1078_RS05345at 342.441 kb on - strand, within HMPREF1078_RS05345at 342.527 kb on + strand, within HMPREF1078_RS05345at 342.546 kb on + strand, within HMPREF1078_RS05345at 342.549 kb on - strand, within HMPREF1078_RS05345at 342.549 kb on - strand, within HMPREF1078_RS05345at 342.573 kb on - strand, within HMPREF1078_RS05345at 342.664 kb on - strand, within HMPREF1078_RS05345at 342.672 kb on + strand, within HMPREF1078_RS05345at 342.672 kb on + strand, within HMPREF1078_RS05345at 342.672 kb on + strand, within HMPREF1078_RS05345at 342.672 kb on + strand, within HMPREF1078_RS05345at 342.672 kb on + strand, within HMPREF1078_RS05345at 342.673 kb on - strand, within HMPREF1078_RS05345at 342.673 kb on - strand, within HMPREF1078_RS05345at 342.673 kb on - strand, within HMPREF1078_RS05345at 342.675 kb on + strand, within HMPREF1078_RS05345at 342.676 kb on - strand, within HMPREF1078_RS05345at 342.676 kb on - strand, within HMPREF1078_RS05345at 342.676 kb on - strand, within HMPREF1078_RS05345at 342.676 kb on - strand, within HMPREF1078_RS05345at 342.798 kb on - strand, within HMPREF1078_RS05345at 342.819 kb on + strand, within HMPREF1078_RS05345at 343.044 kb on - strand, within HMPREF1078_RS05345at 343.050 kb on + strand, within HMPREF1078_RS05345at 343.050 kb on + strand, within HMPREF1078_RS05345at 343.050 kb on + strand, within HMPREF1078_RS05345at 343.051 kb on - strand, within HMPREF1078_RS05345at 343.051 kb on - strand, within HMPREF1078_RS05345at 343.051 kb on - strand, within HMPREF1078_RS05345

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
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340,701 - HMPREF1078_RS05335 0.11 -1.3
340,701 - HMPREF1078_RS05335 0.11 -0.1
340,725 - HMPREF1078_RS05335 0.13 +1.6
340,799 + HMPREF1078_RS05335 0.20 -0.0
340,931 + HMPREF1078_RS05335 0.31 +0.6
340,931 + HMPREF1078_RS05335 0.31 -2.2
340,932 - HMPREF1078_RS05335 0.31 +0.4
340,933 + HMPREF1078_RS05335 0.32 +0.1
340,934 - HMPREF1078_RS05335 0.32 -1.9
340,948 + HMPREF1078_RS05335 0.33 +1.4
341,012 + HMPREF1078_RS05335 0.39 +0.1
341,012 + HMPREF1078_RS05335 0.39 -0.4
341,076 - HMPREF1078_RS05335 0.44 -1.0
341,130 - HMPREF1078_RS05335 0.49 +1.6
341,153 + HMPREF1078_RS05335 0.51 -2.3
341,153 + HMPREF1078_RS05335 0.51 +0.2
341,154 - HMPREF1078_RS05335 0.51 -0.3
341,154 - HMPREF1078_RS05335 0.51 -2.3
341,154 - HMPREF1078_RS05335 0.51 -1.3
341,154 - HMPREF1078_RS05335 0.51 -2.8
341,225 + HMPREF1078_RS05335 0.58 -2.2
341,289 + HMPREF1078_RS05335 0.63 +0.6
341,291 + HMPREF1078_RS05335 0.64 -2.0
341,318 - HMPREF1078_RS05335 0.66 -0.1
341,345 + HMPREF1078_RS05335 0.68 -0.4
341,346 - HMPREF1078_RS05335 0.69 -1.5
341,376 - HMPREF1078_RS05335 0.71 +2.2
341,385 - HMPREF1078_RS05335 0.72 -1.0
341,452 + HMPREF1078_RS05335 0.78 +0.0
341,452 + HMPREF1078_RS05335 0.78 -1.8
341,453 - HMPREF1078_RS05335 0.78 -0.7
341,540 + HMPREF1078_RS05335 0.86 -0.8
341,540 + HMPREF1078_RS05335 0.86 -0.3
341,540 + HMPREF1078_RS05335 0.86 -0.6
341,541 - HMPREF1078_RS05335 0.86 +1.1
341,639 + +0.1
341,640 - +0.6
341,656 - -0.8
341,661 - -0.7
341,661 - -0.4
341,663 + -0.2
341,664 - +0.9
341,698 + +2.2
341,698 + +1.0
341,698 + -0.1
341,698 + -2.3
341,698 + +0.2
341,698 + -0.9
341,698 + +1.8
341,699 - +0.9
341,699 - -1.3
341,699 - -2.3
341,699 - +1.2
341,699 - +0.1
341,699 - -0.6
341,706 - +0.6
341,812 + HMPREF1078_RS05340 0.29 +0.5
341,813 - HMPREF1078_RS05340 0.29 +1.0
341,814 + HMPREF1078_RS05340 0.30 +0.2
341,814 + HMPREF1078_RS05340 0.30 +0.8
341,814 + HMPREF1078_RS05340 0.30 +1.6
341,814 + HMPREF1078_RS05340 0.30 -0.1
341,815 - HMPREF1078_RS05340 0.30 -0.6
341,815 - HMPREF1078_RS05340 0.30 +1.9
341,815 - HMPREF1078_RS05340 0.30 +0.3
341,815 - HMPREF1078_RS05340 0.30 +0.2
341,815 - HMPREF1078_RS05340 0.30 +3.9
341,815 - HMPREF1078_RS05340 0.30 +0.5
341,815 - HMPREF1078_RS05340 0.30 -0.4
341,815 - HMPREF1078_RS05340 0.30 +0.8
341,816 + HMPREF1078_RS05340 0.30 +1.7
341,816 + HMPREF1078_RS05340 0.30 +2.2
341,816 + HMPREF1078_RS05340 0.30 -0.8
341,816 + HMPREF1078_RS05340 0.30 +3.0
341,816 + HMPREF1078_RS05340 0.30 +2.2
341,816 + HMPREF1078_RS05340 0.30 +3.1
341,816 + HMPREF1078_RS05340 0.30 +1.4
341,817 - HMPREF1078_RS05340 0.30 +2.5
341,817 - HMPREF1078_RS05340 0.30 +1.0
341,817 - HMPREF1078_RS05340 0.30 -1.1
341,817 - HMPREF1078_RS05340 0.30 +0.4
341,817 - HMPREF1078_RS05340 0.30 +0.2
341,817 - HMPREF1078_RS05340 0.30 +0.5
341,817 - HMPREF1078_RS05340 0.30 +2.0
341,817 - HMPREF1078_RS05340 0.30 +2.5
341,817 - HMPREF1078_RS05340 0.30 +0.5
341,817 - HMPREF1078_RS05340 0.30 -0.6
341,817 - HMPREF1078_RS05340 0.30 +2.9
341,817 - HMPREF1078_RS05340 0.30 +1.3
341,818 + HMPREF1078_RS05340 0.31 +2.6
341,872 + HMPREF1078_RS05340 0.44 +0.1
341,872 + HMPREF1078_RS05340 0.44 +0.1
341,873 + HMPREF1078_RS05340 0.44 +1.4
341,873 - HMPREF1078_RS05340 0.44 +2.4
341,873 - HMPREF1078_RS05340 0.44 +0.8
341,873 - HMPREF1078_RS05340 0.44 +2.4
341,873 - HMPREF1078_RS05340 0.44 -0.7
341,873 - HMPREF1078_RS05340 0.44 -0.6
341,874 + HMPREF1078_RS05340 0.44 -2.0
341,902 + HMPREF1078_RS05340 0.51 +1.1
341,902 + HMPREF1078_RS05340 0.51 +0.2
341,903 - HMPREF1078_RS05340 0.51 +2.5
341,903 - HMPREF1078_RS05340 0.51 +1.7
341,904 + HMPREF1078_RS05340 0.52 -0.4
341,904 + HMPREF1078_RS05340 0.52 +1.3
341,905 - HMPREF1078_RS05340 0.52 -0.8
341,998 + HMPREF1078_RS05340 0.75 +1.3
341,998 + HMPREF1078_RS05340 0.75 +1.0
341,999 - HMPREF1078_RS05340 0.75 +2.7
341,999 - HMPREF1078_RS05340 0.75 -0.8
342,007 + HMPREF1078_RS05340 0.77 +1.6
342,007 + HMPREF1078_RS05340 0.77 +0.2
342,007 + HMPREF1078_RS05340 0.77 +0.1
342,007 + HMPREF1078_RS05340 0.77 +1.7
342,007 + HMPREF1078_RS05340 0.77 +2.0
342,008 - HMPREF1078_RS05340 0.77 +1.2
342,008 - HMPREF1078_RS05340 0.77 +0.7
342,008 - HMPREF1078_RS05340 0.77 +0.8
342,008 - HMPREF1078_RS05340 0.77 +2.2
342,008 - HMPREF1078_RS05340 0.77 +0.1
342,008 - HMPREF1078_RS05340 0.77 -0.8
342,019 - HMPREF1078_RS05340 0.80 -0.1
342,058 - HMPREF1078_RS05340 0.89 +1.2
342,089 - +2.2
342,090 + +1.2
342,110 - -1.0
342,140 + +1.2
342,140 + +1.8
342,141 - -0.7
342,371 + HMPREF1078_RS05345 0.21 +3.2
342,371 + HMPREF1078_RS05345 0.21 +1.2
342,371 + HMPREF1078_RS05345 0.21 +2.2
342,371 + HMPREF1078_RS05345 0.21 -0.2
342,371 + HMPREF1078_RS05345 0.21 -0.1
342,372 - HMPREF1078_RS05345 0.21 +0.7
342,372 - HMPREF1078_RS05345 0.21 -1.7
342,372 - HMPREF1078_RS05345 0.21 -0.1
342,372 - HMPREF1078_RS05345 0.21 +0.5
342,401 + HMPREF1078_RS05345 0.24 +1.2
342,402 - HMPREF1078_RS05345 0.24 +1.5
342,402 - HMPREF1078_RS05345 0.24 +0.6
342,440 + HMPREF1078_RS05345 0.27 +0.2
342,441 - HMPREF1078_RS05345 0.27 +0.2
342,527 + HMPREF1078_RS05345 0.34 -0.6
342,546 + HMPREF1078_RS05345 0.35 +2.5
342,549 - HMPREF1078_RS05345 0.35 -0.6
342,549 - HMPREF1078_RS05345 0.35 -0.7
342,573 - HMPREF1078_RS05345 0.37 -1.4
342,664 - HMPREF1078_RS05345 0.44 -0.9
342,672 + HMPREF1078_RS05345 0.45 +1.2
342,672 + HMPREF1078_RS05345 0.45 +1.2
342,672 + HMPREF1078_RS05345 0.45 +0.8
342,672 + HMPREF1078_RS05345 0.45 -0.1
342,672 + HMPREF1078_RS05345 0.45 -0.1
342,673 - HMPREF1078_RS05345 0.45 -3.1
342,673 - HMPREF1078_RS05345 0.45 -1.8
342,673 - HMPREF1078_RS05345 0.45 -0.2
342,675 + HMPREF1078_RS05345 0.45 -0.1
342,676 - HMPREF1078_RS05345 0.45 +1.3
342,676 - HMPREF1078_RS05345 0.45 +0.4
342,676 - HMPREF1078_RS05345 0.45 +0.2
342,676 - HMPREF1078_RS05345 0.45 -0.6
342,798 - HMPREF1078_RS05345 0.55 -1.0
342,819 + HMPREF1078_RS05345 0.57 +0.2
343,044 - HMPREF1078_RS05345 0.74 +0.6
343,050 + HMPREF1078_RS05345 0.75 +0.6
343,050 + HMPREF1078_RS05345 0.75 +3.2
343,050 + HMPREF1078_RS05345 0.75 +1.4
343,051 - HMPREF1078_RS05345 0.75 +0.5
343,051 - HMPREF1078_RS05345 0.75 -0.8
343,051 - HMPREF1078_RS05345 0.75 -1.1

Or see this region's nucleotide sequence