Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04490 and HMPREF1078_RS04495 are separated by 283 nucleotides HMPREF1078_RS04495 and HMPREF1078_RS04500 are separated by 33 nucleotides
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
HMPREF1078_RS04495: HMPREF1078_RS04495 - cytochrome d ubiquinol oxidase subunit II, at 131,740 to 132,894
_RS04495
HMPREF1078_RS04500: HMPREF1078_RS04500 - cytochrome ubiquinol oxidase subunit I, at 132,928 to 134,478
_RS04500
Position (kb) 131
132
133 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490 at 131.282 kb on + strand, within HMPREF1078_RS04490 at 131.355 kb on - strand, within HMPREF1078_RS04490 at 131.356 kb on + strand, within HMPREF1078_RS04490 at 131.433 kb on + strand at 131.433 kb on + strand at 131.434 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.440 kb on - strand at 131.481 kb on + strand at 131.482 kb on - strand at 131.490 kb on + strand at 131.558 kb on - strand at 131.558 kb on - strand at 131.565 kb on - strand at 131.567 kb on - strand at 131.583 kb on + strand at 131.592 kb on + strand at 131.606 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.632 kb on - strand at 131.638 kb on + strand at 131.660 kb on + strand at 131.675 kb on + strand at 131.744 kb on + strand at 131.821 kb on - strand at 131.855 kb on + strand at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.856 kb on - strand, within HMPREF1078_RS04495 at 131.932 kb on - strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.939 kb on + strand, within HMPREF1078_RS04495 at 131.940 kb on - strand, within HMPREF1078_RS04495 at 131.946 kb on + strand, within HMPREF1078_RS04495 at 132.030 kb on + strand, within HMPREF1078_RS04495 at 132.060 kb on - strand, within HMPREF1078_RS04495 at 132.124 kb on - strand, within HMPREF1078_RS04495 at 132.128 kb on + strand, within HMPREF1078_RS04495 at 132.133 kb on - strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.144 kb on + strand, within HMPREF1078_RS04495 at 132.145 kb on - strand, within HMPREF1078_RS04495 at 132.146 kb on + strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.147 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495 at 132.353 kb on - strand, within HMPREF1078_RS04495 at 132.477 kb on + strand, within HMPREF1078_RS04495 at 132.478 kb on - strand, within HMPREF1078_RS04495 at 132.540 kb on - strand, within HMPREF1078_RS04495 at 132.578 kb on + strand, within HMPREF1078_RS04495 at 132.578 kb on + strand, within HMPREF1078_RS04495 at 132.661 kb on + strand, within HMPREF1078_RS04495 at 132.717 kb on + strand, within HMPREF1078_RS04495 at 132.717 kb on + strand, within HMPREF1078_RS04495 at 132.718 kb on - strand, within HMPREF1078_RS04495 at 132.808 kb on + strand at 132.877 kb on + strand at 132.878 kb on - strand at 132.878 kb on - strand at 132.878 kb on - strand at 132.878 kb on - strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.879 kb on + strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.880 kb on - strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.881 kb on + strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.882 kb on - strand at 132.886 kb on - strand at 132.889 kb on - strand at 132.894 kb on + strand at 132.915 kb on + strand at 132.916 kb on - strand at 133.142 kb on + strand, within HMPREF1078_RS04500 at 133.142 kb on + strand, within HMPREF1078_RS04500 at 133.323 kb on + strand, within HMPREF1078_RS04500 at 133.500 kb on + strand, within HMPREF1078_RS04500 at 133.501 kb on - strand, within HMPREF1078_RS04500 at 133.502 kb on + strand, within HMPREF1078_RS04500 at 133.538 kb on + strand, within HMPREF1078_RS04500 at 133.538 kb on + strand, within HMPREF1078_RS04500 at 133.538 kb on + strand, within HMPREF1078_RS04500 at 133.539 kb on - strand, within HMPREF1078_RS04500 at 133.539 kb on - strand, within HMPREF1078_RS04500 at 133.610 kb on - strand, within HMPREF1078_RS04500 at 133.614 kb on + strand, within HMPREF1078_RS04500 at 133.615 kb on - strand, within HMPREF1078_RS04500 at 133.615 kb on - strand, within HMPREF1078_RS04500 at 133.685 kb on + strand, within HMPREF1078_RS04500 at 133.685 kb on + strand, within HMPREF1078_RS04500 at 133.685 kb on + strand, within HMPREF1078_RS04500 at 133.760 kb on - strand, within HMPREF1078_RS04500 at 133.764 kb on + strand, within HMPREF1078_RS04500 at 133.765 kb on - strand, within HMPREF1078_RS04500 at 133.847 kb on + strand, within HMPREF1078_RS04500 at 133.848 kb on - strand, within HMPREF1078_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 130,810 + HMPREF1078_RS04490 0.29 -2.2 130,811 - HMPREF1078_RS04490 0.29 -0.7 130,811 - HMPREF1078_RS04490 0.29 +0.6 130,904 - HMPREF1078_RS04490 0.40 +1.2 130,904 - HMPREF1078_RS04490 0.40 +0.4 130,922 + HMPREF1078_RS04490 0.42 -0.8 130,922 + HMPREF1078_RS04490 0.42 +0.6 130,923 - HMPREF1078_RS04490 0.42 -0.1 130,977 - HMPREF1078_RS04490 0.48 -1.5 131,009 - HMPREF1078_RS04490 0.51 +1.6 131,282 + HMPREF1078_RS04490 0.81 -0.6 131,355 - HMPREF1078_RS04490 0.89 -0.9 131,356 + HMPREF1078_RS04490 0.89 -1.3 131,433 + -1.1 131,433 + +0.2 131,434 - -0.4 131,440 - -0.8 131,440 - +2.2 131,440 - -0.3 131,481 + -0.8 131,482 - -1.0 131,490 + -1.4 131,558 - -1.5 131,558 - -0.9 131,565 - -0.7 131,567 - +0.2 131,583 + -0.4 131,592 + -1.1 131,606 - -1.7 131,632 - -0.6 131,632 - -0.5 131,632 - -0.5 131,638 + -0.5 131,660 + -1.8 131,675 + +1.2 131,744 + -0.1 131,821 - -1.5 131,855 + +0.9 131,856 - HMPREF1078_RS04495 0.10 -0.4 131,856 - HMPREF1078_RS04495 0.10 -1.7 131,856 - HMPREF1078_RS04495 0.10 -1.5 131,856 - HMPREF1078_RS04495 0.10 -1.5 131,932 - HMPREF1078_RS04495 0.17 +0.2 131,939 + HMPREF1078_RS04495 0.17 -3.8 131,939 + HMPREF1078_RS04495 0.17 -2.9 131,940 - HMPREF1078_RS04495 0.17 -3.0 131,946 + HMPREF1078_RS04495 0.18 -0.8 132,030 + HMPREF1078_RS04495 0.25 +1.2 132,060 - HMPREF1078_RS04495 0.28 +0.2 132,124 - HMPREF1078_RS04495 0.33 -2.1 132,128 + HMPREF1078_RS04495 0.34 -0.6 132,133 - HMPREF1078_RS04495 0.34 +1.2 132,144 + HMPREF1078_RS04495 0.35 -0.1 132,144 + HMPREF1078_RS04495 0.35 -3.2 132,145 - HMPREF1078_RS04495 0.35 -1.4 132,146 + HMPREF1078_RS04495 0.35 -1.1 132,147 - HMPREF1078_RS04495 0.35 -0.6 132,147 - HMPREF1078_RS04495 0.35 +0.6 132,147 - HMPREF1078_RS04495 0.35 -1.0 132,353 - HMPREF1078_RS04495 0.53 -1.5 132,353 - HMPREF1078_RS04495 0.53 -1.0 132,477 + HMPREF1078_RS04495 0.64 +1.6 132,478 - HMPREF1078_RS04495 0.64 -1.3 132,540 - HMPREF1078_RS04495 0.69 -1.4 132,578 + HMPREF1078_RS04495 0.73 +0.3 132,578 + HMPREF1078_RS04495 0.73 -3.7 132,661 + HMPREF1078_RS04495 0.80 -0.6 132,717 + HMPREF1078_RS04495 0.85 -2.5 132,717 + HMPREF1078_RS04495 0.85 -0.8 132,718 - HMPREF1078_RS04495 0.85 -1.9 132,808 + -2.1 132,877 + -1.1 132,878 - -3.3 132,878 - +1.6 132,878 - -2.0 132,878 - -0.8 132,879 + -1.8 132,879 + -1.0 132,879 + -1.4 132,879 + -2.8 132,879 + -2.2 132,879 + -1.5 132,879 + -2.3 132,880 - -0.4 132,880 - -1.0 132,880 - -1.0 132,880 - -0.2 132,880 - +0.2 132,880 - -2.1 132,880 - -1.6 132,880 - -1.6 132,880 - -1.4 132,880 - -1.0 132,881 + -0.6 132,881 + -1.8 132,881 + -1.6 132,882 - -1.6 132,882 - -1.4 132,882 - -1.8 132,882 - +0.2 132,882 - -2.2 132,882 - -1.3 132,882 - -1.4 132,882 - -1.8 132,882 - -1.4 132,886 - -1.3 132,889 - -1.1 132,894 + -2.6 132,915 + -0.8 132,916 - -0.6 133,142 + HMPREF1078_RS04500 0.14 -1.1 133,142 + HMPREF1078_RS04500 0.14 +2.2 133,323 + HMPREF1078_RS04500 0.25 -2.7 133,500 + HMPREF1078_RS04500 0.37 -1.3 133,501 - HMPREF1078_RS04500 0.37 +1.6 133,502 + HMPREF1078_RS04500 0.37 -0.8 133,538 + HMPREF1078_RS04500 0.39 -0.0 133,538 + HMPREF1078_RS04500 0.39 -2.2 133,538 + HMPREF1078_RS04500 0.39 -2.3 133,539 - HMPREF1078_RS04500 0.39 +0.2 133,539 - HMPREF1078_RS04500 0.39 -1.5 133,610 - HMPREF1078_RS04500 0.44 -0.1 133,614 + HMPREF1078_RS04500 0.44 -0.6 133,615 - HMPREF1078_RS04500 0.44 -0.4 133,615 - HMPREF1078_RS04500 0.44 -2.9 133,685 + HMPREF1078_RS04500 0.49 +0.2 133,685 + HMPREF1078_RS04500 0.49 -1.0 133,685 + HMPREF1078_RS04500 0.49 -2.3 133,760 - HMPREF1078_RS04500 0.54 -1.4 133,764 + HMPREF1078_RS04500 0.54 +2.2 133,765 - HMPREF1078_RS04500 0.54 -2.4 133,847 + HMPREF1078_RS04500 0.59 +1.2 133,848 - HMPREF1078_RS04500 0.59 -0.1
Or see this region's nucleotide sequence