Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04405 and HMPREF1078_RS04410 are separated by 15 nucleotides HMPREF1078_RS04410 and HMPREF1078_RS04415 are separated by 87 nucleotides HMPREF1078_RS04415 and HMPREF1078_RS04420 are separated by 94 nucleotides
HMPREF1078_RS04405: HMPREF1078_RS04405 - M23 family metallopeptidase, at 112,201 to 113,184
_RS04405
HMPREF1078_RS04410: HMPREF1078_RS04410 - MerR family transcriptional regulator, at 113,200 to 113,556
_RS04410
HMPREF1078_RS04415: HMPREF1078_RS04415 - DUF3127 domain-containing protein, at 113,644 to 114,039
_RS04415
HMPREF1078_RS04420: HMPREF1078_RS04420 - RelA/SpoT family protein, at 114,134 to 116,428
_RS04420
Position (kb) 113
114
115 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 112.651 kb on + strand, within HMPREF1078_RS04405 at 112.719 kb on + strand, within HMPREF1078_RS04405 at 112.761 kb on + strand, within HMPREF1078_RS04405 at 112.761 kb on + strand, within HMPREF1078_RS04405 at 112.803 kb on + strand, within HMPREF1078_RS04405 at 112.858 kb on + strand, within HMPREF1078_RS04405 at 112.906 kb on + strand, within HMPREF1078_RS04405 at 112.954 kb on + strand, within HMPREF1078_RS04405 at 112.997 kb on + strand, within HMPREF1078_RS04405 at 113.086 kb on + strand at 113.104 kb on + strand at 113.107 kb on + strand at 113.110 kb on + strand at 113.110 kb on + strand at 113.142 kb on + strand at 113.142 kb on + strand at 113.142 kb on + strand at 113.561 kb on + strand at 113.562 kb on - strand at 113.562 kb on - strand at 113.596 kb on + strand at 113.630 kb on + strand at 113.728 kb on + strand, within HMPREF1078_RS04415 at 113.728 kb on + strand, within HMPREF1078_RS04415 at 113.728 kb on + strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.729 kb on - strand, within HMPREF1078_RS04415 at 113.765 kb on + strand, within HMPREF1078_RS04415 at 113.765 kb on + strand, within HMPREF1078_RS04415 at 113.765 kb on + strand, within HMPREF1078_RS04415 at 113.765 kb on + strand, within HMPREF1078_RS04415 at 113.810 kb on + strand, within HMPREF1078_RS04415 at 113.829 kb on + strand, within HMPREF1078_RS04415 at 113.829 kb on + strand, within HMPREF1078_RS04415 at 113.829 kb on + strand, within HMPREF1078_RS04415 at 113.830 kb on - strand, within HMPREF1078_RS04415 at 113.830 kb on - strand, within HMPREF1078_RS04415 at 113.830 kb on - strand, within HMPREF1078_RS04415 at 113.834 kb on + strand, within HMPREF1078_RS04415 at 113.846 kb on + strand, within HMPREF1078_RS04415 at 113.861 kb on - strand, within HMPREF1078_RS04415 at 113.883 kb on + strand, within HMPREF1078_RS04415 at 113.884 kb on - strand, within HMPREF1078_RS04415 at 113.960 kb on + strand, within HMPREF1078_RS04415 at 114.038 kb on - strand at 114.097 kb on + strand at 114.099 kb on + strand at 114.106 kb on + strand at 114.135 kb on + strand at 114.573 kb on + strand, within HMPREF1078_RS04420 at 114.573 kb on + strand, within HMPREF1078_RS04420 at 114.573 kb on + strand, within HMPREF1078_RS04420 at 114.574 kb on - strand, within HMPREF1078_RS04420 at 114.591 kb on + strand, within HMPREF1078_RS04420 at 114.591 kb on + strand, within HMPREF1078_RS04420 at 114.591 kb on + strand, within HMPREF1078_RS04420
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 112,651 + HMPREF1078_RS04405 0.46 -0.4 112,719 + HMPREF1078_RS04405 0.53 -0.3 112,761 + HMPREF1078_RS04405 0.57 -0.1 112,761 + HMPREF1078_RS04405 0.57 -2.3 112,803 + HMPREF1078_RS04405 0.61 -0.9 112,858 + HMPREF1078_RS04405 0.67 -0.4 112,906 + HMPREF1078_RS04405 0.72 -1.8 112,954 + HMPREF1078_RS04405 0.77 -0.9 112,997 + HMPREF1078_RS04405 0.81 -1.2 113,086 + -1.7 113,104 + -2.3 113,107 + -0.6 113,110 + -0.1 113,110 + +0.9 113,142 + -1.5 113,142 + -1.4 113,142 + +2.2 113,561 + -1.4 113,562 - -0.6 113,562 - +3.1 113,596 + -0.6 113,630 + -1.0 113,728 + HMPREF1078_RS04415 0.21 -1.1 113,728 + HMPREF1078_RS04415 0.21 -2.0 113,728 + HMPREF1078_RS04415 0.21 -1.1 113,729 - HMPREF1078_RS04415 0.21 -0.6 113,729 - HMPREF1078_RS04415 0.21 -0.7 113,729 - HMPREF1078_RS04415 0.21 +2.2 113,729 - HMPREF1078_RS04415 0.21 -2.5 113,729 - HMPREF1078_RS04415 0.21 -1.7 113,729 - HMPREF1078_RS04415 0.21 -0.6 113,765 + HMPREF1078_RS04415 0.31 -0.6 113,765 + HMPREF1078_RS04415 0.31 -1.7 113,765 + HMPREF1078_RS04415 0.31 -2.8 113,765 + HMPREF1078_RS04415 0.31 -0.5 113,810 + HMPREF1078_RS04415 0.42 -1.3 113,829 + HMPREF1078_RS04415 0.47 -0.7 113,829 + HMPREF1078_RS04415 0.47 -2.5 113,829 + HMPREF1078_RS04415 0.47 -2.3 113,830 - HMPREF1078_RS04415 0.47 -0.1 113,830 - HMPREF1078_RS04415 0.47 -2.2 113,830 - HMPREF1078_RS04415 0.47 -2.0 113,834 + HMPREF1078_RS04415 0.48 +0.6 113,846 + HMPREF1078_RS04415 0.51 -2.6 113,861 - HMPREF1078_RS04415 0.55 -2.5 113,883 + HMPREF1078_RS04415 0.60 -0.0 113,884 - HMPREF1078_RS04415 0.61 -2.6 113,960 + HMPREF1078_RS04415 0.80 -1.8 114,038 - -1.5 114,097 + +0.2 114,099 + +0.8 114,106 + -0.0 114,135 + +0.9 114,573 + HMPREF1078_RS04420 0.19 -1.3 114,573 + HMPREF1078_RS04420 0.19 +0.6 114,573 + HMPREF1078_RS04420 0.19 +0.6 114,574 - HMPREF1078_RS04420 0.19 -1.9 114,591 + HMPREF1078_RS04420 0.20 -1.1 114,591 + HMPREF1078_RS04420 0.20 +1.2 114,591 + HMPREF1078_RS04420 0.20 +0.6
Or see this region's nucleotide sequence