Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03230 and HMPREF1078_RS03235 overlap by 17 nucleotides HMPREF1078_RS03235 and HMPREF1078_RS03240 are separated by 29 nucleotides
HMPREF1078_RS03230: HMPREF1078_RS03230 - zincin-like metallopeptidase domain-containing protein, at 766,207 to 767,532
_RS03230
HMPREF1078_RS03235: HMPREF1078_RS03235 - hypothetical protein, at 767,516 to 767,746
_RS03235
HMPREF1078_RS03240: HMPREF1078_RS03240 - DNA mismatch repair protein MutS, at 767,776 to 769,095
_RS03240
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.609 kb on + strand, within HMPREF1078_RS03230 at 766.631 kb on + strand, within HMPREF1078_RS03230 at 766.632 kb on - strand, within HMPREF1078_RS03230 at 766.817 kb on + strand, within HMPREF1078_RS03230 at 766.818 kb on - strand, within HMPREF1078_RS03230 at 766.835 kb on + strand, within HMPREF1078_RS03230 at 766.893 kb on + strand, within HMPREF1078_RS03230 at 766.893 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 766.997 kb on + strand, within HMPREF1078_RS03230 at 767.001 kb on + strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.002 kb on - strand, within HMPREF1078_RS03230 at 767.099 kb on + strand, within HMPREF1078_RS03230 at 767.100 kb on - strand, within HMPREF1078_RS03230 at 767.100 kb on - strand, within HMPREF1078_RS03230 at 767.215 kb on - strand, within HMPREF1078_RS03230 at 767.222 kb on + strand, within HMPREF1078_RS03230 at 767.222 kb on + strand, within HMPREF1078_RS03230 at 767.223 kb on - strand, within HMPREF1078_RS03230 at 767.223 kb on - strand, within HMPREF1078_RS03230 at 767.271 kb on + strand, within HMPREF1078_RS03230 at 767.455 kb on - strand at 767.532 kb on + strand at 767.533 kb on - strand at 767.533 kb on - strand at 767.590 kb on - strand, within HMPREF1078_RS03235 at 767.590 kb on - strand, within HMPREF1078_RS03235 at 767.691 kb on - strand, within HMPREF1078_RS03235 at 767.746 kb on + strand at 767.746 kb on + strand at 767.748 kb on + strand at 767.749 kb on - strand at 767.755 kb on + strand at 767.756 kb on - strand at 767.760 kb on + strand at 767.760 kb on + strand at 767.773 kb on - strand at 767.773 kb on - strand at 767.818 kb on - strand at 767.818 kb on - strand at 767.853 kb on - strand at 767.853 kb on - strand at 768.191 kb on + strand, within HMPREF1078_RS03240 at 768.230 kb on + strand, within HMPREF1078_RS03240 at 768.231 kb on - strand, within HMPREF1078_RS03240 at 768.469 kb on - strand, within HMPREF1078_RS03240 at 768.729 kb on + strand, within HMPREF1078_RS03240
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 766,609 + HMPREF1078_RS03230 0.30 +2.3 766,631 + HMPREF1078_RS03230 0.32 -0.7 766,632 - HMPREF1078_RS03230 0.32 +1.3 766,817 + HMPREF1078_RS03230 0.46 -1.7 766,818 - HMPREF1078_RS03230 0.46 +2.3 766,835 + HMPREF1078_RS03230 0.47 -0.7 766,893 + HMPREF1078_RS03230 0.52 -0.9 766,893 + HMPREF1078_RS03230 0.52 +0.7 766,997 + HMPREF1078_RS03230 0.60 +0.3 766,997 + HMPREF1078_RS03230 0.60 -0.6 766,997 + HMPREF1078_RS03230 0.60 +1.3 766,997 + HMPREF1078_RS03230 0.60 -0.9 767,001 + HMPREF1078_RS03230 0.60 -0.2 767,002 - HMPREF1078_RS03230 0.60 -1.0 767,002 - HMPREF1078_RS03230 0.60 +0.9 767,002 - HMPREF1078_RS03230 0.60 -1.6 767,099 + HMPREF1078_RS03230 0.67 +1.3 767,100 - HMPREF1078_RS03230 0.67 +1.3 767,100 - HMPREF1078_RS03230 0.67 +0.7 767,215 - HMPREF1078_RS03230 0.76 +0.3 767,222 + HMPREF1078_RS03230 0.77 -0.0 767,222 + HMPREF1078_RS03230 0.77 +1.1 767,223 - HMPREF1078_RS03230 0.77 -0.5 767,223 - HMPREF1078_RS03230 0.77 -1.6 767,271 + HMPREF1078_RS03230 0.80 -1.0 767,455 - -0.7 767,532 + -2.1 767,533 - -1.8 767,533 - -1.9 767,590 - HMPREF1078_RS03235 0.32 +0.1 767,590 - HMPREF1078_RS03235 0.32 -1.0 767,691 - HMPREF1078_RS03235 0.76 -1.3 767,746 + -0.7 767,746 + -0.3 767,748 + -0.7 767,749 - -2.0 767,755 + -1.3 767,756 - -1.7 767,760 + -0.5 767,760 + -3.2 767,773 - +0.3 767,773 - +1.6 767,818 - -1.7 767,818 - +0.3 767,853 - +0.4 767,853 - +0.4 768,191 + HMPREF1078_RS03240 0.31 +0.2 768,230 + HMPREF1078_RS03240 0.34 -1.3 768,231 - HMPREF1078_RS03240 0.34 -0.9 768,469 - HMPREF1078_RS03240 0.53 +0.6 768,729 + HMPREF1078_RS03240 0.72 -0.3
Or see this region's nucleotide sequence