Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00900 and HMPREF1078_RS00905 overlap by 4 nucleotides HMPREF1078_RS00905 and HMPREF1078_RS00910 are separated by 169 nucleotides
HMPREF1078_RS00900: HMPREF1078_RS00900 - efflux RND transporter permease subunit, at 217,495 to 220,611
_RS00900
HMPREF1078_RS00905: HMPREF1078_RS00905 - TolC family protein, at 220,608 to 221,789
_RS00905
HMPREF1078_RS00910: HMPREF1078_RS00910 - GH92 family glycosyl hydrolase, at 221,959 to 224,268
_RS00910
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 219.617 kb on + strand, within HMPREF1078_RS00900 at 219.617 kb on + strand, within HMPREF1078_RS00900 at 219.618 kb on - strand, within HMPREF1078_RS00900 at 219.712 kb on + strand, within HMPREF1078_RS00900 at 219.742 kb on + strand, within HMPREF1078_RS00900 at 219.742 kb on + strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.743 kb on - strand, within HMPREF1078_RS00900 at 219.901 kb on + strand, within HMPREF1078_RS00900 at 219.963 kb on + strand, within HMPREF1078_RS00900 at 219.981 kb on + strand, within HMPREF1078_RS00900 at 219.982 kb on - strand, within HMPREF1078_RS00900 at 220.023 kb on - strand, within HMPREF1078_RS00900 at 220.023 kb on - strand, within HMPREF1078_RS00900 at 220.034 kb on + strand, within HMPREF1078_RS00900 at 220.035 kb on - strand, within HMPREF1078_RS00900 at 220.063 kb on + strand, within HMPREF1078_RS00900 at 220.064 kb on - strand, within HMPREF1078_RS00900 at 220.125 kb on + strand, within HMPREF1078_RS00900 at 220.165 kb on + strand, within HMPREF1078_RS00900 at 220.202 kb on + strand, within HMPREF1078_RS00900 at 220.373 kb on + strand at 220.373 kb on + strand at 220.374 kb on - strand at 220.374 kb on - strand at 220.422 kb on + strand at 220.500 kb on - strand at 220.527 kb on - strand at 220.583 kb on + strand at 220.586 kb on + strand at 220.621 kb on + strand at 220.630 kb on + strand at 220.794 kb on - strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.797 kb on + strand, within HMPREF1078_RS00905 at 220.809 kb on + strand, within HMPREF1078_RS00905 at 220.810 kb on - strand, within HMPREF1078_RS00905 at 220.879 kb on + strand, within HMPREF1078_RS00905 at 220.879 kb on + strand, within HMPREF1078_RS00905 at 220.882 kb on - strand, within HMPREF1078_RS00905 at 220.883 kb on + strand, within HMPREF1078_RS00905 at 220.883 kb on + strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.884 kb on - strand, within HMPREF1078_RS00905 at 220.923 kb on + strand, within HMPREF1078_RS00905 at 221.061 kb on + strand, within HMPREF1078_RS00905 at 221.062 kb on - strand, within HMPREF1078_RS00905 at 221.146 kb on + strand, within HMPREF1078_RS00905 at 221.213 kb on + strand, within HMPREF1078_RS00905 at 221.236 kb on - strand, within HMPREF1078_RS00905 at 221.729 kb on + strand at 221.730 kb on - strand at 221.773 kb on - strand at 221.787 kb on + strand at 221.810 kb on - strand at 221.844 kb on + strand at 221.845 kb on - strand at 221.845 kb on - strand at 221.845 kb on - strand at 221.905 kb on + strand at 221.906 kb on - strand at 221.923 kb on - strand at 221.923 kb on - strand at 221.939 kb on + strand at 221.940 kb on - strand at 221.948 kb on + strand at 221.949 kb on - strand at 221.949 kb on - strand at 221.950 kb on + strand at 221.950 kb on + strand at 221.950 kb on + strand at 221.973 kb on + strand at 221.975 kb on + strand at 221.976 kb on - strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.991 kb on + strand at 221.992 kb on - strand at 221.992 kb on - strand at 221.997 kb on + strand at 221.997 kb on + strand at 221.998 kb on - strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.098 kb on + strand at 222.099 kb on - strand at 222.116 kb on - strand at 222.125 kb on + strand at 222.125 kb on + strand at 222.125 kb on + strand at 222.126 kb on - strand at 222.126 kb on - strand at 222.126 kb on - strand at 222.191 kb on - strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.192 kb on + strand, within HMPREF1078_RS00910 at 222.193 kb on - strand, within HMPREF1078_RS00910 at 222.193 kb on - strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.196 kb on + strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.197 kb on - strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.212 kb on + strand, within HMPREF1078_RS00910 at 222.213 kb on - strand, within HMPREF1078_RS00910 at 222.213 kb on - strand, within HMPREF1078_RS00910 at 222.336 kb on + strand, within HMPREF1078_RS00910 at 222.336 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.358 kb on + strand, within HMPREF1078_RS00910 at 222.359 kb on - strand, within HMPREF1078_RS00910 at 222.359 kb on - strand, within HMPREF1078_RS00910 at 222.361 kb on + strand, within HMPREF1078_RS00910 at 222.361 kb on + strand, within HMPREF1078_RS00910 at 222.362 kb on - strand, within HMPREF1078_RS00910 at 222.362 kb on - strand, within HMPREF1078_RS00910 at 222.364 kb on + strand, within HMPREF1078_RS00910 at 222.374 kb on - strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.463 kb on + strand, within HMPREF1078_RS00910 at 222.464 kb on - strand, within HMPREF1078_RS00910 at 222.464 kb on - strand, within HMPREF1078_RS00910 at 222.470 kb on + strand, within HMPREF1078_RS00910 at 222.470 kb on + strand, within HMPREF1078_RS00910 at 222.496 kb on + strand, within HMPREF1078_RS00910 at 222.497 kb on - strand, within HMPREF1078_RS00910 at 222.535 kb on + strand, within HMPREF1078_RS00910 at 222.535 kb on + strand, within HMPREF1078_RS00910 at 222.537 kb on + strand, within HMPREF1078_RS00910 at 222.537 kb on + strand, within HMPREF1078_RS00910 at 222.560 kb on + strand, within HMPREF1078_RS00910 at 222.580 kb on + strand, within HMPREF1078_RS00910 at 222.613 kb on + strand, within HMPREF1078_RS00910 at 222.613 kb on + strand, within HMPREF1078_RS00910 at 222.697 kb on - strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.719 kb on + strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910 at 222.720 kb on - strand, within HMPREF1078_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 219,617 + HMPREF1078_RS00900 0.68 -1.0 219,617 + HMPREF1078_RS00900 0.68 -2.7 219,618 - HMPREF1078_RS00900 0.68 -0.9 219,712 + HMPREF1078_RS00900 0.71 -2.0 219,742 + HMPREF1078_RS00900 0.72 -2.6 219,742 + HMPREF1078_RS00900 0.72 +1.4 219,743 - HMPREF1078_RS00900 0.72 +0.8 219,743 - HMPREF1078_RS00900 0.72 -1.1 219,743 - HMPREF1078_RS00900 0.72 -2.2 219,901 + HMPREF1078_RS00900 0.77 -0.5 219,963 + HMPREF1078_RS00900 0.79 -0.6 219,981 + HMPREF1078_RS00900 0.80 +0.0 219,982 - HMPREF1078_RS00900 0.80 +2.4 220,023 - HMPREF1078_RS00900 0.81 -0.7 220,023 - HMPREF1078_RS00900 0.81 -1.1 220,034 + HMPREF1078_RS00900 0.81 -0.5 220,035 - HMPREF1078_RS00900 0.81 +0.0 220,063 + HMPREF1078_RS00900 0.82 +1.4 220,064 - HMPREF1078_RS00900 0.82 -0.6 220,125 + HMPREF1078_RS00900 0.84 -1.1 220,165 + HMPREF1078_RS00900 0.86 -1.7 220,202 + HMPREF1078_RS00900 0.87 -2.0 220,373 + -1.8 220,373 + -0.6 220,374 - -1.0 220,374 - -1.9 220,422 + -1.0 220,500 - +0.0 220,527 - +0.4 220,583 + -1.1 220,586 + -0.5 220,621 + -2.6 220,630 + -0.8 220,794 - HMPREF1078_RS00905 0.16 +1.4 220,797 + HMPREF1078_RS00905 0.16 -0.6 220,797 + HMPREF1078_RS00905 0.16 +1.4 220,797 + HMPREF1078_RS00905 0.16 -0.5 220,797 + HMPREF1078_RS00905 0.16 -1.9 220,809 + HMPREF1078_RS00905 0.17 -1.9 220,810 - HMPREF1078_RS00905 0.17 -0.2 220,879 + HMPREF1078_RS00905 0.23 -0.2 220,879 + HMPREF1078_RS00905 0.23 +0.4 220,882 - HMPREF1078_RS00905 0.23 -1.8 220,883 + HMPREF1078_RS00905 0.23 -2.3 220,883 + HMPREF1078_RS00905 0.23 -2.2 220,884 - HMPREF1078_RS00905 0.23 -1.8 220,884 - HMPREF1078_RS00905 0.23 +2.4 220,884 - HMPREF1078_RS00905 0.23 -1.2 220,884 - HMPREF1078_RS00905 0.23 -0.6 220,923 + HMPREF1078_RS00905 0.27 -0.6 221,061 + HMPREF1078_RS00905 0.38 -1.8 221,062 - HMPREF1078_RS00905 0.38 +1.0 221,146 + HMPREF1078_RS00905 0.46 +2.4 221,213 + HMPREF1078_RS00905 0.51 -0.6 221,236 - HMPREF1078_RS00905 0.53 -0.5 221,729 + -0.5 221,730 - +1.4 221,773 - -1.8 221,787 + +0.8 221,810 - +0.8 221,844 + +1.5 221,845 - +0.6 221,845 - -0.5 221,845 - -0.5 221,905 + +1.4 221,906 - -0.5 221,923 - -0.2 221,923 - +1.1 221,939 + -1.2 221,940 - -0.8 221,948 + +0.1 221,949 - -0.2 221,949 - -1.8 221,950 + +0.9 221,950 + -0.5 221,950 + -0.5 221,973 + -3.7 221,975 + +0.1 221,976 - +1.2 221,991 + -2.0 221,991 + -1.1 221,991 + +0.0 221,991 + +0.0 221,991 + -0.1 221,991 + -0.5 221,992 - -0.5 221,992 - -1.6 221,997 + -1.8 221,997 + -2.6 221,998 - +1.5 222,098 + -1.0 222,098 + +0.8 222,098 + +1.8 222,098 + -0.8 222,099 - +1.1 222,116 - +1.4 222,125 + +0.2 222,125 + -0.2 222,125 + +0.4 222,126 - -0.2 222,126 - -3.0 222,126 - -3.0 222,191 - HMPREF1078_RS00910 0.10 +0.4 222,192 + HMPREF1078_RS00910 0.10 +1.1 222,192 + HMPREF1078_RS00910 0.10 -0.5 222,192 + HMPREF1078_RS00910 0.10 -1.2 222,192 + HMPREF1078_RS00910 0.10 +1.1 222,192 + HMPREF1078_RS00910 0.10 -0.7 222,192 + HMPREF1078_RS00910 0.10 -1.5 222,192 + HMPREF1078_RS00910 0.10 +0.2 222,192 + HMPREF1078_RS00910 0.10 +0.4 222,192 + HMPREF1078_RS00910 0.10 -1.8 222,192 + HMPREF1078_RS00910 0.10 +1.4 222,193 - HMPREF1078_RS00910 0.10 +2.9 222,193 - HMPREF1078_RS00910 0.10 -2.1 222,196 + HMPREF1078_RS00910 0.10 -0.8 222,196 + HMPREF1078_RS00910 0.10 -0.2 222,196 + HMPREF1078_RS00910 0.10 -1.1 222,197 - HMPREF1078_RS00910 0.10 -1.5 222,197 - HMPREF1078_RS00910 0.10 -1.6 222,197 - HMPREF1078_RS00910 0.10 -1.2 222,197 - HMPREF1078_RS00910 0.10 +0.3 222,197 - HMPREF1078_RS00910 0.10 -0.2 222,212 + HMPREF1078_RS00910 0.11 -0.2 222,212 + HMPREF1078_RS00910 0.11 -0.2 222,212 + HMPREF1078_RS00910 0.11 -0.6 222,213 - HMPREF1078_RS00910 0.11 -0.3 222,213 - HMPREF1078_RS00910 0.11 +0.5 222,336 + HMPREF1078_RS00910 0.16 -1.1 222,336 + HMPREF1078_RS00910 0.16 +1.4 222,358 + HMPREF1078_RS00910 0.17 -1.1 222,358 + HMPREF1078_RS00910 0.17 +0.6 222,358 + HMPREF1078_RS00910 0.17 +0.0 222,359 - HMPREF1078_RS00910 0.17 +1.5 222,359 - HMPREF1078_RS00910 0.17 -1.9 222,361 + HMPREF1078_RS00910 0.17 +0.2 222,361 + HMPREF1078_RS00910 0.17 +0.4 222,362 - HMPREF1078_RS00910 0.17 +0.9 222,362 - HMPREF1078_RS00910 0.17 -0.8 222,364 + HMPREF1078_RS00910 0.18 -0.2 222,374 - HMPREF1078_RS00910 0.18 -2.0 222,463 + HMPREF1078_RS00910 0.22 -1.1 222,463 + HMPREF1078_RS00910 0.22 -0.6 222,463 + HMPREF1078_RS00910 0.22 +1.4 222,463 + HMPREF1078_RS00910 0.22 +0.5 222,463 + HMPREF1078_RS00910 0.22 +2.4 222,463 + HMPREF1078_RS00910 0.22 +1.1 222,464 - HMPREF1078_RS00910 0.22 +0.0 222,464 - HMPREF1078_RS00910 0.22 +0.4 222,470 + HMPREF1078_RS00910 0.22 +1.8 222,470 + HMPREF1078_RS00910 0.22 +0.8 222,496 + HMPREF1078_RS00910 0.23 -0.5 222,497 - HMPREF1078_RS00910 0.23 -1.2 222,535 + HMPREF1078_RS00910 0.25 +0.9 222,535 + HMPREF1078_RS00910 0.25 +0.6 222,537 + HMPREF1078_RS00910 0.25 -0.3 222,537 + HMPREF1078_RS00910 0.25 +1.0 222,560 + HMPREF1078_RS00910 0.26 -0.8 222,580 + HMPREF1078_RS00910 0.27 -1.0 222,613 + HMPREF1078_RS00910 0.28 +1.2 222,613 + HMPREF1078_RS00910 0.28 -0.6 222,697 - HMPREF1078_RS00910 0.32 +0.2 222,719 + HMPREF1078_RS00910 0.33 -0.2 222,719 + HMPREF1078_RS00910 0.33 +1.4 222,719 + HMPREF1078_RS00910 0.33 +3.9 222,719 + HMPREF1078_RS00910 0.33 +1.0 222,719 + HMPREF1078_RS00910 0.33 +0.2 222,720 - HMPREF1078_RS00910 0.33 +1.9 222,720 - HMPREF1078_RS00910 0.33 -0.2 222,720 - HMPREF1078_RS00910 0.33 -0.6
Or see this region's nucleotide sequence