Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00790 and HMPREF1078_RS00795 are separated by 214 nucleotides HMPREF1078_RS00795 and HMPREF1078_RS00800 are separated by 762 nucleotides
HMPREF1078_RS00790: HMPREF1078_RS00790 - outer membrane protein transport protein, at 187,421 to 189,094
_RS00790
HMPREF1078_RS00795: HMPREF1078_RS00795 - sigma-70 family RNA polymerase sigma factor, at 189,309 to 189,902
_RS00795
HMPREF1078_RS00800: HMPREF1078_RS00800 - ribulose-phosphate 3-epimerase, at 190,665 to 191,315
_RS00800
Position (kb) 189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 188.329 kb on - strand, within HMPREF1078_RS00790 at 188.371 kb on + strand, within HMPREF1078_RS00790 at 188.372 kb on - strand, within HMPREF1078_RS00790 at 188.372 kb on - strand, within HMPREF1078_RS00790 at 188.387 kb on + strand, within HMPREF1078_RS00790 at 188.387 kb on + strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.388 kb on - strand, within HMPREF1078_RS00790 at 188.390 kb on - strand, within HMPREF1078_RS00790 at 188.390 kb on - strand, within HMPREF1078_RS00790 at 188.402 kb on + strand, within HMPREF1078_RS00790 at 188.402 kb on + strand, within HMPREF1078_RS00790 at 188.403 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.406 kb on - strand, within HMPREF1078_RS00790 at 188.426 kb on + strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.610 kb on - strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.611 kb on + strand, within HMPREF1078_RS00790 at 188.612 kb on - strand, within HMPREF1078_RS00790 at 188.612 kb on - strand, within HMPREF1078_RS00790 at 188.625 kb on + strand, within HMPREF1078_RS00790 at 188.626 kb on - strand, within HMPREF1078_RS00790 at 188.626 kb on - strand, within HMPREF1078_RS00790 at 188.678 kb on + strand, within HMPREF1078_RS00790 at 188.679 kb on - strand, within HMPREF1078_RS00790 at 188.737 kb on + strand, within HMPREF1078_RS00790 at 188.738 kb on - strand, within HMPREF1078_RS00790 at 188.738 kb on - strand, within HMPREF1078_RS00790 at 188.754 kb on + strand, within HMPREF1078_RS00790 at 188.755 kb on - strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.804 kb on + strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.805 kb on - strand, within HMPREF1078_RS00790 at 188.845 kb on - strand, within HMPREF1078_RS00790 at 188.851 kb on + strand, within HMPREF1078_RS00790 at 188.852 kb on - strand, within HMPREF1078_RS00790 at 188.870 kb on + strand, within HMPREF1078_RS00790 at 188.870 kb on + strand, within HMPREF1078_RS00790 at 188.871 kb on - strand, within HMPREF1078_RS00790 at 188.871 kb on - strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.872 kb on + strand, within HMPREF1078_RS00790 at 188.873 kb on - strand, within HMPREF1078_RS00790 at 188.873 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.885 kb on - strand, within HMPREF1078_RS00790 at 188.894 kb on + strand, within HMPREF1078_RS00790 at 188.894 kb on + strand, within HMPREF1078_RS00790 at 188.895 kb on - strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.896 kb on + strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.897 kb on - strand, within HMPREF1078_RS00790 at 188.899 kb on + strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.900 kb on - strand, within HMPREF1078_RS00790 at 188.930 kb on - strand at 188.930 kb on - strand at 188.935 kb on - strand at 188.957 kb on + strand at 188.995 kb on + strand at 188.996 kb on - strand at 188.999 kb on + strand at 188.999 kb on + strand at 189.024 kb on + strand at 189.025 kb on - strand at 189.073 kb on + strand at 189.073 kb on + strand at 189.073 kb on + strand at 189.074 kb on - strand at 189.074 kb on - strand at 189.074 kb on - strand at 189.078 kb on + strand at 189.085 kb on + strand at 189.085 kb on + strand at 189.085 kb on + strand at 189.112 kb on + strand at 189.129 kb on + strand at 189.129 kb on + strand at 189.134 kb on - strand at 189.160 kb on - strand at 189.187 kb on - strand at 189.190 kb on + strand at 189.224 kb on + strand at 189.231 kb on + strand at 189.234 kb on + strand at 189.234 kb on + strand at 189.250 kb on + strand at 189.254 kb on + strand at 189.264 kb on + strand at 189.264 kb on + strand at 189.264 kb on + strand at 189.266 kb on + strand at 189.266 kb on + strand at 189.271 kb on + strand at 189.278 kb on + strand at 189.307 kb on + strand at 189.354 kb on + strand at 189.368 kb on + strand at 189.368 kb on + strand at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.385 kb on + strand, within HMPREF1078_RS00795 at 189.407 kb on + strand, within HMPREF1078_RS00795 at 189.407 kb on + strand, within HMPREF1078_RS00795 at 189.412 kb on + strand, within HMPREF1078_RS00795 at 189.412 kb on + strand, within HMPREF1078_RS00795 at 189.420 kb on + strand, within HMPREF1078_RS00795 at 189.426 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.431 kb on + strand, within HMPREF1078_RS00795 at 189.433 kb on + strand, within HMPREF1078_RS00795 at 189.461 kb on + strand, within HMPREF1078_RS00795 at 189.461 kb on + strand, within HMPREF1078_RS00795 at 189.491 kb on + strand, within HMPREF1078_RS00795 at 189.634 kb on + strand, within HMPREF1078_RS00795 at 189.634 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.641 kb on + strand, within HMPREF1078_RS00795 at 189.644 kb on + strand, within HMPREF1078_RS00795 at 189.674 kb on + strand, within HMPREF1078_RS00795 at 189.682 kb on + strand, within HMPREF1078_RS00795 at 189.762 kb on + strand, within HMPREF1078_RS00795 at 189.765 kb on + strand, within HMPREF1078_RS00795 at 189.765 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.800 kb on + strand, within HMPREF1078_RS00795 at 189.808 kb on + strand, within HMPREF1078_RS00795 at 189.818 kb on + strand, within HMPREF1078_RS00795 at 189.819 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.833 kb on + strand, within HMPREF1078_RS00795 at 189.904 kb on - strand at 190.128 kb on - strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.306 kb on + strand at 190.316 kb on + strand at 190.317 kb on - strand at 190.337 kb on - strand at 190.337 kb on - strand at 190.337 kb on - strand at 190.348 kb on - strand at 190.401 kb on + strand at 190.402 kb on - strand at 190.402 kb on - strand at 190.414 kb on + strand at 190.428 kb on + strand at 190.431 kb on + strand at 190.483 kb on + strand at 190.483 kb on + strand at 190.483 kb on + strand at 190.602 kb on + strand at 190.626 kb on + strand at 190.664 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=Mono; mouse19; day7 remove 188,329 - HMPREF1078_RS00790 0.54 -0.1 188,371 + HMPREF1078_RS00790 0.57 -0.5 188,372 - HMPREF1078_RS00790 0.57 -0.5 188,372 - HMPREF1078_RS00790 0.57 +0.5 188,387 + HMPREF1078_RS00790 0.58 -2.3 188,387 + HMPREF1078_RS00790 0.58 -3.0 188,388 - HMPREF1078_RS00790 0.58 -1.8 188,388 - HMPREF1078_RS00790 0.58 -0.5 188,388 - HMPREF1078_RS00790 0.58 -0.5 188,390 - HMPREF1078_RS00790 0.58 +0.8 188,390 - HMPREF1078_RS00790 0.58 +2.4 188,402 + HMPREF1078_RS00790 0.59 -1.5 188,402 + HMPREF1078_RS00790 0.59 -1.0 188,403 - HMPREF1078_RS00790 0.59 -1.0 188,406 - HMPREF1078_RS00790 0.59 -1.2 188,406 - HMPREF1078_RS00790 0.59 -2.4 188,406 - HMPREF1078_RS00790 0.59 -1.5 188,426 + HMPREF1078_RS00790 0.60 -2.5 188,610 - HMPREF1078_RS00790 0.71 +0.0 188,610 - HMPREF1078_RS00790 0.71 -0.6 188,610 - HMPREF1078_RS00790 0.71 +2.4 188,611 + HMPREF1078_RS00790 0.71 +0.8 188,611 + HMPREF1078_RS00790 0.71 -1.2 188,611 + HMPREF1078_RS00790 0.71 -2.3 188,611 + HMPREF1078_RS00790 0.71 +0.8 188,612 - HMPREF1078_RS00790 0.71 -0.6 188,612 - HMPREF1078_RS00790 0.71 -0.7 188,625 + HMPREF1078_RS00790 0.72 -0.5 188,626 - HMPREF1078_RS00790 0.72 -1.3 188,626 - HMPREF1078_RS00790 0.72 -1.6 188,678 + HMPREF1078_RS00790 0.75 -0.1 188,679 - HMPREF1078_RS00790 0.75 +0.0 188,737 + HMPREF1078_RS00790 0.79 -1.2 188,738 - HMPREF1078_RS00790 0.79 -1.5 188,738 - HMPREF1078_RS00790 0.79 -1.4 188,754 + HMPREF1078_RS00790 0.80 +0.8 188,755 - HMPREF1078_RS00790 0.80 -0.5 188,804 + HMPREF1078_RS00790 0.83 -2.1 188,804 + HMPREF1078_RS00790 0.83 -0.5 188,804 + HMPREF1078_RS00790 0.83 -2.8 188,805 - HMPREF1078_RS00790 0.83 +0.0 188,805 - HMPREF1078_RS00790 0.83 -2.0 188,805 - HMPREF1078_RS00790 0.83 -1.0 188,845 - HMPREF1078_RS00790 0.85 -1.7 188,851 + HMPREF1078_RS00790 0.85 -0.8 188,852 - HMPREF1078_RS00790 0.85 -0.9 188,870 + HMPREF1078_RS00790 0.87 -0.2 188,870 + HMPREF1078_RS00790 0.87 -0.0 188,871 - HMPREF1078_RS00790 0.87 -0.8 188,871 - HMPREF1078_RS00790 0.87 -2.7 188,872 + HMPREF1078_RS00790 0.87 -1.6 188,872 + HMPREF1078_RS00790 0.87 -1.8 188,872 + HMPREF1078_RS00790 0.87 -2.6 188,872 + HMPREF1078_RS00790 0.87 -3.5 188,873 - HMPREF1078_RS00790 0.87 -0.9 188,873 - HMPREF1078_RS00790 0.87 +0.9 188,885 - HMPREF1078_RS00790 0.87 -0.2 188,885 - HMPREF1078_RS00790 0.87 -1.1 188,885 - HMPREF1078_RS00790 0.87 -1.5 188,894 + HMPREF1078_RS00790 0.88 -2.8 188,894 + HMPREF1078_RS00790 0.88 -2.2 188,895 - HMPREF1078_RS00790 0.88 +1.0 188,896 + HMPREF1078_RS00790 0.88 -1.8 188,896 + HMPREF1078_RS00790 0.88 -2.5 188,896 + HMPREF1078_RS00790 0.88 -0.8 188,896 + HMPREF1078_RS00790 0.88 -1.2 188,896 + HMPREF1078_RS00790 0.88 -1.5 188,896 + HMPREF1078_RS00790 0.88 -0.8 188,896 + HMPREF1078_RS00790 0.88 -2.5 188,896 + HMPREF1078_RS00790 0.88 +1.0 188,896 + HMPREF1078_RS00790 0.88 -0.5 188,897 - HMPREF1078_RS00790 0.88 +0.0 188,897 - HMPREF1078_RS00790 0.88 -1.5 188,897 - HMPREF1078_RS00790 0.88 -1.5 188,897 - HMPREF1078_RS00790 0.88 +1.4 188,897 - HMPREF1078_RS00790 0.88 -2.6 188,899 + HMPREF1078_RS00790 0.88 +1.2 188,900 - HMPREF1078_RS00790 0.88 -0.1 188,900 - HMPREF1078_RS00790 0.88 -1.0 188,900 - HMPREF1078_RS00790 0.88 -2.0 188,900 - HMPREF1078_RS00790 0.88 -1.9 188,930 - -1.0 188,930 - -2.0 188,935 - -2.0 188,957 + -2.8 188,995 + -0.6 188,996 - -2.6 188,999 + +0.4 188,999 + -2.0 189,024 + +0.8 189,025 - -1.2 189,073 + -0.8 189,073 + -1.3 189,073 + -0.9 189,074 - -0.2 189,074 - +2.4 189,074 - +0.2 189,078 + -1.1 189,085 + -1.3 189,085 + -1.5 189,085 + -1.0 189,112 + +0.9 189,129 + -2.5 189,129 + +0.8 189,134 - -0.3 189,160 - +0.4 189,187 - -1.5 189,190 + +0.0 189,224 + -0.3 189,231 + -0.2 189,234 + +0.1 189,234 + +0.0 189,250 + -0.2 189,254 + -0.5 189,264 + -1.5 189,264 + -2.3 189,264 + -2.6 189,266 + +0.8 189,266 + -0.8 189,271 + +1.5 189,278 + +2.5 189,307 + -1.7 189,354 + -2.9 189,368 + -4.0 189,368 + -1.9 189,385 + HMPREF1078_RS00795 0.13 -3.5 189,385 + HMPREF1078_RS00795 0.13 -1.7 189,385 + HMPREF1078_RS00795 0.13 -3.7 189,407 + HMPREF1078_RS00795 0.16 -3.3 189,407 + HMPREF1078_RS00795 0.16 -3.2 189,412 + HMPREF1078_RS00795 0.17 -0.7 189,412 + HMPREF1078_RS00795 0.17 -3.4 189,420 + HMPREF1078_RS00795 0.19 -2.0 189,426 + HMPREF1078_RS00795 0.20 -2.6 189,431 + HMPREF1078_RS00795 0.21 -3.9 189,431 + HMPREF1078_RS00795 0.21 -3.6 189,431 + HMPREF1078_RS00795 0.21 -2.0 189,433 + HMPREF1078_RS00795 0.21 -1.6 189,461 + HMPREF1078_RS00795 0.26 -2.6 189,461 + HMPREF1078_RS00795 0.26 -1.5 189,491 + HMPREF1078_RS00795 0.31 -2.9 189,634 + HMPREF1078_RS00795 0.55 -3.2 189,634 + HMPREF1078_RS00795 0.55 -3.0 189,641 + HMPREF1078_RS00795 0.56 -2.3 189,641 + HMPREF1078_RS00795 0.56 -3.9 189,641 + HMPREF1078_RS00795 0.56 -3.5 189,644 + HMPREF1078_RS00795 0.56 -1.5 189,674 + HMPREF1078_RS00795 0.61 -3.5 189,682 + HMPREF1078_RS00795 0.63 -1.3 189,762 + HMPREF1078_RS00795 0.76 -0.8 189,765 + HMPREF1078_RS00795 0.77 -2.6 189,765 + HMPREF1078_RS00795 0.77 -2.8 189,800 + HMPREF1078_RS00795 0.83 -3.5 189,800 + HMPREF1078_RS00795 0.83 -1.1 189,800 + HMPREF1078_RS00795 0.83 -4.1 189,808 + HMPREF1078_RS00795 0.84 -2.5 189,818 + HMPREF1078_RS00795 0.86 -0.9 189,819 + HMPREF1078_RS00795 0.86 -2.7 189,833 + HMPREF1078_RS00795 0.88 -3.7 189,833 + HMPREF1078_RS00795 0.88 -2.5 189,833 + HMPREF1078_RS00795 0.88 -1.2 189,833 + HMPREF1078_RS00795 0.88 -1.5 189,904 - -0.8 190,128 - -1.1 190,306 + -0.4 190,306 + +1.5 190,306 + +0.4 190,306 + +0.0 190,306 + +2.4 190,306 + -2.5 190,316 + -1.7 190,317 - -1.0 190,337 - -0.8 190,337 - +0.5 190,337 - -1.3 190,348 - -0.6 190,401 + -0.1 190,402 - +0.4 190,402 - -0.8 190,414 + +0.8 190,428 + -0.1 190,431 + -0.2 190,483 + +0.0 190,483 + +1.0 190,483 + +1.5 190,602 + -1.2 190,626 + -0.2 190,664 + -0.2
Or see this region's nucleotide sequence