Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01110 and HMPREF1078_RS01115 are separated by 131 nucleotides HMPREF1078_RS01115 and HMPREF1078_RS01120 are separated by 127 nucleotides HMPREF1078_RS01120 and HMPREF1078_RS01125 are separated by 102 nucleotides
HMPREF1078_RS01110: HMPREF1078_RS01110 - DNA topoisomerase 3, at 278,524 to 280,602
_RS01110
HMPREF1078_RS01115: HMPREF1078_RS01115 - DUF4833 domain-containing protein, at 280,734 to 281,282
_RS01115
HMPREF1078_RS01120: HMPREF1078_RS01120 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 281,410 to 282,183
_RS01120
HMPREF1078_RS01125: HMPREF1078_RS01125 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 282,286 to 283,356
_RS01125
Position (kb) 281
282
283 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 280.448 kb on + strand at 280.495 kb on + strand at 280.518 kb on + strand at 280.519 kb on - strand at 280.570 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.595 kb on - strand at 280.595 kb on - strand at 280.626 kb on + strand at 280.627 kb on - strand at 280.670 kb on - strand at 280.725 kb on - strand at 280.769 kb on + strand at 280.780 kb on - strand at 280.810 kb on - strand, within HMPREF1078_RS01115 at 280.837 kb on + strand, within HMPREF1078_RS01115 at 280.837 kb on + strand, within HMPREF1078_RS01115 at 280.849 kb on - strand, within HMPREF1078_RS01115 at 280.904 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.956 kb on - strand, within HMPREF1078_RS01115 at 280.961 kb on - strand, within HMPREF1078_RS01115 at 281.083 kb on - strand, within HMPREF1078_RS01115 at 281.136 kb on - strand, within HMPREF1078_RS01115 at 281.136 kb on - strand, within HMPREF1078_RS01115 at 281.171 kb on - strand, within HMPREF1078_RS01115 at 281.189 kb on + strand, within HMPREF1078_RS01115 at 281.206 kb on + strand, within HMPREF1078_RS01115 at 281.206 kb on + strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.241 kb on + strand at 281.241 kb on + strand at 281.242 kb on - strand at 281.250 kb on + strand at 281.251 kb on - strand at 281.261 kb on + strand at 281.262 kb on - strand at 281.279 kb on - strand at 281.295 kb on + strand at 281.295 kb on + strand at 281.300 kb on + strand at 281.301 kb on - strand at 281.311 kb on + strand at 281.316 kb on - strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.382 kb on - strand at 281.398 kb on + strand at 281.398 kb on + strand at 281.408 kb on + strand at 281.441 kb on + strand at 281.561 kb on + strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.595 kb on - strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.719 kb on - strand, within HMPREF1078_RS01120 at 281.721 kb on - strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.731 kb on - strand, within HMPREF1078_RS01120 at 281.734 kb on + strand, within HMPREF1078_RS01120 at 281.735 kb on - strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.751 kb on - strand, within HMPREF1078_RS01120 at 281.755 kb on - strand, within HMPREF1078_RS01120 at 281.767 kb on + strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.863 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.937 kb on + strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.942 kb on + strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.954 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.988 kb on - strand, within HMPREF1078_RS01120 at 281.992 kb on + strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.103 kb on + strand, within HMPREF1078_RS01120 at 282.109 kb on + strand at 282.109 kb on + strand at 282.126 kb on + strand at 282.130 kb on + strand at 282.131 kb on - strand at 282.169 kb on + strand at 282.176 kb on - strand at 282.190 kb on + strand at 282.190 kb on + strand at 282.191 kb on - strand at 282.204 kb on - strand at 282.204 kb on - strand at 282.206 kb on + strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.218 kb on - strand at 282.220 kb on + strand at 282.220 kb on - strand at 282.221 kb on - strand at 282.240 kb on + strand at 282.262 kb on + strand at 282.263 kb on - strand at 282.265 kb on + strand at 282.266 kb on - strand at 282.266 kb on - strand at 282.281 kb on + strand at 282.282 kb on - strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.285 kb on - strand at 282.285 kb on - strand at 282.287 kb on + strand at 282.288 kb on - strand at 282.392 kb on + strand at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.490 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.614 kb on - strand, within HMPREF1078_RS01125 at 282.811 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.899 kb on + strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 283.027 kb on - strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day5 remove 280,448 + -3.8 280,495 + -2.7 280,518 + -2.0 280,519 - -1.9 280,570 + -3.4 280,590 + -1.4 280,590 + -0.6 280,590 + +0.4 280,590 + -2.4 280,591 - +2.0 280,591 - -2.5 280,591 - -1.7 280,591 - +0.0 280,591 - -2.3 280,591 - -1.6 280,591 - +0.6 280,591 - -1.0 280,595 - +0.0 280,595 - -0.6 280,626 + -0.6 280,627 - -2.7 280,670 - -1.3 280,725 - +0.3 280,769 + -1.2 280,780 - -0.5 280,810 - HMPREF1078_RS01115 0.14 -2.1 280,837 + HMPREF1078_RS01115 0.19 +1.0 280,837 + HMPREF1078_RS01115 0.19 +0.7 280,849 - HMPREF1078_RS01115 0.21 +1.6 280,904 + HMPREF1078_RS01115 0.31 -0.4 280,955 + HMPREF1078_RS01115 0.40 -2.6 280,955 + HMPREF1078_RS01115 0.40 -2.2 280,955 + HMPREF1078_RS01115 0.40 -0.4 280,956 - HMPREF1078_RS01115 0.40 +1.6 280,961 - HMPREF1078_RS01115 0.41 +0.0 281,083 - HMPREF1078_RS01115 0.64 -1.6 281,136 - HMPREF1078_RS01115 0.73 -2.5 281,136 - HMPREF1078_RS01115 0.73 +2.0 281,171 - HMPREF1078_RS01115 0.80 +0.0 281,189 + HMPREF1078_RS01115 0.83 -2.3 281,206 + HMPREF1078_RS01115 0.86 -0.7 281,206 + HMPREF1078_RS01115 0.86 -0.2 281,207 - HMPREF1078_RS01115 0.86 -0.4 281,207 - HMPREF1078_RS01115 0.86 +0.9 281,207 - HMPREF1078_RS01115 0.86 -1.9 281,241 + +0.0 281,241 + -2.0 281,242 - +0.7 281,250 + +0.9 281,251 - -4.2 281,261 + -2.7 281,262 - +1.0 281,279 - +0.1 281,295 + +0.4 281,295 + -1.9 281,300 + -2.4 281,301 - -0.6 281,311 + -2.2 281,316 - -0.1 281,381 + +1.5 281,381 + -0.5 281,381 + +0.3 281,382 - +0.3 281,398 + +2.0 281,398 + -1.2 281,408 + +0.1 281,441 + -1.4 281,561 + HMPREF1078_RS01120 0.20 -0.9 281,562 - HMPREF1078_RS01120 0.20 -1.2 281,562 - HMPREF1078_RS01120 0.20 -1.4 281,562 - HMPREF1078_RS01120 0.20 -1.0 281,590 + HMPREF1078_RS01120 0.23 -2.2 281,590 + HMPREF1078_RS01120 0.23 -1.1 281,595 - HMPREF1078_RS01120 0.24 -0.6 281,653 + HMPREF1078_RS01120 0.31 +0.4 281,653 + HMPREF1078_RS01120 0.31 -1.0 281,654 - HMPREF1078_RS01120 0.32 -3.5 281,654 - HMPREF1078_RS01120 0.32 -3.4 281,719 - HMPREF1078_RS01120 0.40 -3.7 281,721 - HMPREF1078_RS01120 0.40 -2.0 281,730 + HMPREF1078_RS01120 0.41 +1.4 281,730 + HMPREF1078_RS01120 0.41 -1.9 281,730 + HMPREF1078_RS01120 0.41 -1.2 281,731 - HMPREF1078_RS01120 0.41 -0.7 281,734 + HMPREF1078_RS01120 0.42 +0.1 281,735 - HMPREF1078_RS01120 0.42 -0.7 281,750 + HMPREF1078_RS01120 0.44 +1.6 281,750 + HMPREF1078_RS01120 0.44 -2.9 281,751 - HMPREF1078_RS01120 0.44 +0.9 281,755 - HMPREF1078_RS01120 0.45 -3.5 281,767 + HMPREF1078_RS01120 0.46 -3.1 281,797 - HMPREF1078_RS01120 0.50 -1.6 281,797 - HMPREF1078_RS01120 0.50 -2.5 281,805 + HMPREF1078_RS01120 0.51 -1.2 281,805 + HMPREF1078_RS01120 0.51 -1.0 281,863 - HMPREF1078_RS01120 0.59 -2.0 281,871 - HMPREF1078_RS01120 0.60 -3.8 281,871 - HMPREF1078_RS01120 0.60 -1.0 281,937 + HMPREF1078_RS01120 0.68 -1.2 281,938 - HMPREF1078_RS01120 0.68 -0.9 281,938 - HMPREF1078_RS01120 0.68 -2.8 281,942 + HMPREF1078_RS01120 0.69 -2.5 281,943 - HMPREF1078_RS01120 0.69 -0.9 281,943 - HMPREF1078_RS01120 0.69 -1.2 281,954 + HMPREF1078_RS01120 0.70 +0.6 281,985 + HMPREF1078_RS01120 0.74 -2.5 281,985 + HMPREF1078_RS01120 0.74 -1.1 281,988 - HMPREF1078_RS01120 0.75 -2.2 281,992 + HMPREF1078_RS01120 0.75 -2.1 281,993 - HMPREF1078_RS01120 0.75 -2.3 281,993 - HMPREF1078_RS01120 0.75 -1.6 281,993 - HMPREF1078_RS01120 0.75 -2.8 282,069 - HMPREF1078_RS01120 0.85 -1.4 282,069 - HMPREF1078_RS01120 0.85 -2.5 282,069 - HMPREF1078_RS01120 0.85 -3.2 282,069 - HMPREF1078_RS01120 0.85 +0.6 282,069 - HMPREF1078_RS01120 0.85 -1.6 282,103 + HMPREF1078_RS01120 0.90 -1.6 282,109 + -2.9 282,109 + -2.4 282,126 + -2.6 282,130 + -3.5 282,131 - -1.0 282,169 + +0.0 282,176 - -1.7 282,190 + -1.0 282,190 + -2.2 282,191 - +1.0 282,204 - -1.1 282,204 - -0.4 282,206 + -0.6 282,207 - +1.4 282,207 - -0.5 282,207 - -1.2 282,218 - -1.2 282,220 + -1.0 282,220 - -2.7 282,221 - -1.2 282,240 + -2.2 282,262 + -0.2 282,263 - -4.1 282,265 + +0.0 282,266 - +0.6 282,266 - -3.1 282,281 + -1.6 282,282 - -1.0 282,284 + -2.2 282,284 + -2.7 282,284 + -0.4 282,285 - +0.1 282,285 - -1.0 282,287 + +0.9 282,288 - +0.8 282,392 + -2.8 282,444 + HMPREF1078_RS01125 0.15 -0.3 282,444 + HMPREF1078_RS01125 0.15 -2.0 282,445 - HMPREF1078_RS01125 0.15 -2.1 282,445 - HMPREF1078_RS01125 0.15 -1.6 282,445 - HMPREF1078_RS01125 0.15 -1.4 282,445 - HMPREF1078_RS01125 0.15 -1.0 282,445 - HMPREF1078_RS01125 0.15 -2.3 282,484 - HMPREF1078_RS01125 0.18 -1.3 282,484 - HMPREF1078_RS01125 0.18 -1.2 282,484 - HMPREF1078_RS01125 0.18 -2.7 282,489 + HMPREF1078_RS01125 0.19 -0.0 282,489 + HMPREF1078_RS01125 0.19 +0.6 282,490 - HMPREF1078_RS01125 0.19 -2.1 282,606 - HMPREF1078_RS01125 0.30 +1.0 282,606 - HMPREF1078_RS01125 0.30 +0.4 282,606 - HMPREF1078_RS01125 0.30 -1.3 282,606 - HMPREF1078_RS01125 0.30 -2.7 282,606 - HMPREF1078_RS01125 0.30 -0.0 282,614 - HMPREF1078_RS01125 0.31 +0.6 282,811 - HMPREF1078_RS01125 0.49 -0.7 282,834 - HMPREF1078_RS01125 0.51 -2.7 282,834 - HMPREF1078_RS01125 0.51 +1.6 282,843 + HMPREF1078_RS01125 0.52 -1.6 282,843 + HMPREF1078_RS01125 0.52 -2.0 282,844 - HMPREF1078_RS01125 0.52 -0.0 282,844 - HMPREF1078_RS01125 0.52 -2.1 282,849 - HMPREF1078_RS01125 0.53 -1.8 282,849 - HMPREF1078_RS01125 0.53 -3.1 282,849 - HMPREF1078_RS01125 0.53 -1.4 282,899 + HMPREF1078_RS01125 0.57 -1.0 282,900 - HMPREF1078_RS01125 0.57 -2.7 282,900 - HMPREF1078_RS01125 0.57 -1.2 282,973 + HMPREF1078_RS01125 0.64 -2.4 282,973 + HMPREF1078_RS01125 0.64 -0.7 282,974 - HMPREF1078_RS01125 0.64 -2.5 282,974 - HMPREF1078_RS01125 0.64 -2.8 283,027 - HMPREF1078_RS01125 0.69 -0.0 283,109 + HMPREF1078_RS01125 0.77 +1.6 283,109 + HMPREF1078_RS01125 0.77 +0.6 283,109 + HMPREF1078_RS01125 0.77 -1.6 283,110 - HMPREF1078_RS01125 0.77 -1.7 283,110 - HMPREF1078_RS01125 0.77 -3.1 283,110 - HMPREF1078_RS01125 0.77 -1.0 283,110 - HMPREF1078_RS01125 0.77 -1.0 283,110 - HMPREF1078_RS01125 0.77 -1.3 283,110 - HMPREF1078_RS01125 0.77 -1.0 283,110 - HMPREF1078_RS01125 0.77 -1.6 283,110 - HMPREF1078_RS01125 0.77 -1.9 283,110 - HMPREF1078_RS01125 0.77 -2.1 283,113 + HMPREF1078_RS01125 0.77 +1.1 283,113 + HMPREF1078_RS01125 0.77 -1.0 283,113 + HMPREF1078_RS01125 0.77 -1.1 283,114 - HMPREF1078_RS01125 0.77 +0.3 283,114 - HMPREF1078_RS01125 0.77 -1.2
Or see this region's nucleotide sequence