Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00030

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00020 and HMPREF1078_RS00025 overlap by 4 nucleotidesHMPREF1078_RS00025 and HMPREF1078_RS00030 overlap by 8 nucleotidesHMPREF1078_RS00030 and HMPREF1078_RS00035 are separated by 23 nucleotidesHMPREF1078_RS00035 and HMPREF1078_RS00040 are separated by 91 nucleotides HMPREF1078_RS00020: HMPREF1078_RS00020 - nitroreductase family protein, at 6,202 to 6,762 _RS00020 HMPREF1078_RS00025: HMPREF1078_RS00025 - Rossmann-like and DUF2520 domain-containing protein, at 6,759 to 7,526 _RS00025 HMPREF1078_RS00030: HMPREF1078_RS00030 - HAD-IIIA family hydrolase, at 7,519 to 8,040 _RS00030 HMPREF1078_RS00035: HMPREF1078_RS00035 - Maf-like protein, at 8,064 to 8,654 _RS00035 HMPREF1078_RS00040: HMPREF1078_RS00040 - glycoside hydrolase family 31 protein, at 8,746 to 11,130 _RS00040 Position (kb) 7 8 9Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.592 kb on + strand, within HMPREF1078_RS00020at 6.615 kb on - strand, within HMPREF1078_RS00020at 6.615 kb on - strand, within HMPREF1078_RS00020at 6.619 kb on + strand, within HMPREF1078_RS00020at 6.657 kb on + strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.658 kb on - strand, within HMPREF1078_RS00020at 6.672 kb on + strand, within HMPREF1078_RS00020at 6.672 kb on + strand, within HMPREF1078_RS00020at 6.673 kb on - strand, within HMPREF1078_RS00020at 6.673 kb on - strand, within HMPREF1078_RS00020at 6.711 kb on - strandat 6.711 kb on - strandat 6.846 kb on + strand, within HMPREF1078_RS00025at 6.846 kb on + strand, within HMPREF1078_RS00025at 6.846 kb on + strand, within HMPREF1078_RS00025at 6.847 kb on - strand, within HMPREF1078_RS00025at 6.854 kb on + strand, within HMPREF1078_RS00025at 6.942 kb on + strand, within HMPREF1078_RS00025at 6.942 kb on + strand, within HMPREF1078_RS00025at 6.943 kb on - strand, within HMPREF1078_RS00025at 7.019 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.068 kb on + strand, within HMPREF1078_RS00025at 7.071 kb on - strand, within HMPREF1078_RS00025at 7.114 kb on + strand, within HMPREF1078_RS00025at 7.148 kb on + strand, within HMPREF1078_RS00025at 7.148 kb on + strand, within HMPREF1078_RS00025at 7.151 kb on + strand, within HMPREF1078_RS00025at 7.152 kb on - strand, within HMPREF1078_RS00025at 7.205 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.280 kb on + strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.281 kb on - strand, within HMPREF1078_RS00025at 7.347 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.370 kb on - strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.373 kb on + strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.374 kb on - strand, within HMPREF1078_RS00025at 7.433 kb on + strand, within HMPREF1078_RS00025at 7.437 kb on - strand, within HMPREF1078_RS00025at 7.448 kb on + strand, within HMPREF1078_RS00025at 7.502 kb on - strandat 7.502 kb on - strandat 7.502 kb on - strandat 7.505 kb on + strandat 7.506 kb on - strandat 7.524 kb on + strandat 7.525 kb on - strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.527 kb on + strandat 7.528 kb on - strandat 7.528 kb on - strandat 7.545 kb on + strandat 7.546 kb on - strandat 7.551 kb on - strandat 7.595 kb on + strand, within HMPREF1078_RS00030at 7.623 kb on + strand, within HMPREF1078_RS00030at 7.623 kb on + strand, within HMPREF1078_RS00030at 7.624 kb on - strand, within HMPREF1078_RS00030at 7.651 kb on + strand, within HMPREF1078_RS00030at 7.681 kb on + strand, within HMPREF1078_RS00030at 7.689 kb on - strand, within HMPREF1078_RS00030at 7.709 kb on - strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.755 kb on + strand, within HMPREF1078_RS00030at 7.756 kb on - strand, within HMPREF1078_RS00030at 7.756 kb on - strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.757 kb on + strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.758 kb on - strand, within HMPREF1078_RS00030at 7.759 kb on + strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.760 kb on - strand, within HMPREF1078_RS00030at 7.761 kb on + strand, within HMPREF1078_RS00030at 7.761 kb on + strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.762 kb on - strand, within HMPREF1078_RS00030at 7.765 kb on + strand, within HMPREF1078_RS00030at 7.833 kb on + strand, within HMPREF1078_RS00030at 7.837 kb on + strand, within HMPREF1078_RS00030at 7.838 kb on - strand, within HMPREF1078_RS00030at 7.852 kb on - strand, within HMPREF1078_RS00030at 7.936 kb on + strand, within HMPREF1078_RS00030at 7.936 kb on + strand, within HMPREF1078_RS00030at 7.937 kb on - strand, within HMPREF1078_RS00030at 8.038 kb on + strandat 8.039 kb on - strandat 8.039 kb on - strandat 8.045 kb on - strandat 8.074 kb on + strandat 8.075 kb on - strandat 8.167 kb on + strand, within HMPREF1078_RS00035at 8.186 kb on - strand, within HMPREF1078_RS00035at 8.232 kb on + strand, within HMPREF1078_RS00035at 8.233 kb on - strand, within HMPREF1078_RS00035at 8.233 kb on - strand, within HMPREF1078_RS00035at 8.234 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.259 kb on + strand, within HMPREF1078_RS00035at 8.260 kb on - strand, within HMPREF1078_RS00035at 8.260 kb on - strand, within HMPREF1078_RS00035at 8.392 kb on + strand, within HMPREF1078_RS00035at 8.392 kb on + strand, within HMPREF1078_RS00035at 8.421 kb on - strand, within HMPREF1078_RS00035at 8.502 kb on + strand, within HMPREF1078_RS00035at 8.502 kb on + strand, within HMPREF1078_RS00035at 8.514 kb on + strand, within HMPREF1078_RS00035at 8.515 kb on - strand, within HMPREF1078_RS00035at 8.537 kb on + strand, within HMPREF1078_RS00035at 8.541 kb on + strand, within HMPREF1078_RS00035at 8.542 kb on - strand, within HMPREF1078_RS00035at 8.542 kb on - strand, within HMPREF1078_RS00035at 8.542 kb on - strand, within HMPREF1078_RS00035at 8.548 kb on + strand, within HMPREF1078_RS00035at 8.598 kb on + strandat 8.632 kb on - strandat 8.678 kb on + strandat 8.678 kb on + strandat 8.688 kb on + strandat 8.689 kb on - strandat 8.706 kb on + strandat 8.707 kb on - strandat 8.731 kb on + strandat 8.731 kb on + strandat 8.738 kb on + strandat 8.742 kb on + strandat 8.758 kb on + strandat 8.762 kb on - strandat 8.762 kb on - strandat 8.771 kb on + strandat 8.772 kb on - strandat 8.772 kb on - strandat 8.896 kb on - strandat 8.946 kb on + strandat 8.946 kb on + strandat 8.947 kb on - strandat 8.989 kb on - strand, within HMPREF1078_RS00040at 9.036 kb on + strand, within HMPREF1078_RS00040

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse18; day4
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6,592 + HMPREF1078_RS00020 0.70 -1.3
6,615 - HMPREF1078_RS00020 0.74 -1.8
6,615 - HMPREF1078_RS00020 0.74 -1.4
6,619 + HMPREF1078_RS00020 0.74 +0.4
6,657 + HMPREF1078_RS00020 0.81 +0.2
6,658 - HMPREF1078_RS00020 0.81 -0.4
6,658 - HMPREF1078_RS00020 0.81 -0.8
6,658 - HMPREF1078_RS00020 0.81 -1.0
6,658 - HMPREF1078_RS00020 0.81 -2.8
6,672 + HMPREF1078_RS00020 0.84 +1.5
6,672 + HMPREF1078_RS00020 0.84 +1.8
6,673 - HMPREF1078_RS00020 0.84 +1.4
6,673 - HMPREF1078_RS00020 0.84 -3.4
6,711 - -0.8
6,711 - -3.0
6,846 + HMPREF1078_RS00025 0.11 +1.9
6,846 + HMPREF1078_RS00025 0.11 -0.5
6,846 + HMPREF1078_RS00025 0.11 -0.9
6,847 - HMPREF1078_RS00025 0.11 -2.2
6,854 + HMPREF1078_RS00025 0.12 -1.0
6,942 + HMPREF1078_RS00025 0.24 +0.1
6,942 + HMPREF1078_RS00025 0.24 -1.4
6,943 - HMPREF1078_RS00025 0.24 -1.0
7,019 + HMPREF1078_RS00025 0.34 -1.1
7,068 + HMPREF1078_RS00025 0.40 -2.9
7,068 + HMPREF1078_RS00025 0.40 +0.2
7,068 + HMPREF1078_RS00025 0.40 -1.9
7,071 - HMPREF1078_RS00025 0.41 +0.2
7,114 + HMPREF1078_RS00025 0.46 -0.4
7,148 + HMPREF1078_RS00025 0.51 -2.6
7,148 + HMPREF1078_RS00025 0.51 -0.8
7,151 + HMPREF1078_RS00025 0.51 -2.4
7,152 - HMPREF1078_RS00025 0.51 -2.6
7,205 + HMPREF1078_RS00025 0.58 -3.3
7,280 + HMPREF1078_RS00025 0.68 -1.0
7,280 + HMPREF1078_RS00025 0.68 -1.4
7,280 + HMPREF1078_RS00025 0.68 -2.4
7,281 - HMPREF1078_RS00025 0.68 -1.8
7,281 - HMPREF1078_RS00025 0.68 -0.4
7,281 - HMPREF1078_RS00025 0.68 +1.2
7,281 - HMPREF1078_RS00025 0.68 -1.1
7,347 - HMPREF1078_RS00025 0.77 -0.8
7,370 - HMPREF1078_RS00025 0.80 +1.2
7,370 - HMPREF1078_RS00025 0.80 -1.8
7,370 - HMPREF1078_RS00025 0.80 -2.8
7,373 + HMPREF1078_RS00025 0.80 -1.7
7,373 + HMPREF1078_RS00025 0.80 -1.7
7,373 + HMPREF1078_RS00025 0.80 +0.2
7,374 - HMPREF1078_RS00025 0.80 -1.6
7,374 - HMPREF1078_RS00025 0.80 -1.7
7,374 - HMPREF1078_RS00025 0.80 -0.4
7,374 - HMPREF1078_RS00025 0.80 -3.0
7,374 - HMPREF1078_RS00025 0.80 -1.1
7,374 - HMPREF1078_RS00025 0.80 +0.2
7,374 - HMPREF1078_RS00025 0.80 -2.3
7,433 + HMPREF1078_RS00025 0.88 -0.0
7,437 - HMPREF1078_RS00025 0.88 -1.5
7,448 + HMPREF1078_RS00025 0.90 -2.3
7,502 - +1.2
7,502 - -0.4
7,502 - -2.4
7,505 + -0.2
7,506 - -1.6
7,524 + -1.6
7,525 - -1.3
7,527 + -0.4
7,527 + -0.8
7,527 + -1.1
7,527 + -0.4
7,528 - -2.1
7,528 - -1.3
7,545 + +1.2
7,546 - -0.8
7,551 - -2.5
7,595 + HMPREF1078_RS00030 0.15 -1.4
7,623 + HMPREF1078_RS00030 0.20 -2.0
7,623 + HMPREF1078_RS00030 0.20 -0.6
7,624 - HMPREF1078_RS00030 0.20 -1.6
7,651 + HMPREF1078_RS00030 0.25 -2.7
7,681 + HMPREF1078_RS00030 0.31 -0.4
7,689 - HMPREF1078_RS00030 0.33 -1.5
7,709 - HMPREF1078_RS00030 0.36 -0.1
7,755 + HMPREF1078_RS00030 0.45 -0.7
7,755 + HMPREF1078_RS00030 0.45 -0.4
7,755 + HMPREF1078_RS00030 0.45 +0.9
7,755 + HMPREF1078_RS00030 0.45 -0.4
7,756 - HMPREF1078_RS00030 0.45 -1.1
7,756 - HMPREF1078_RS00030 0.45 -3.0
7,757 + HMPREF1078_RS00030 0.46 +1.2
7,757 + HMPREF1078_RS00030 0.46 -1.7
7,757 + HMPREF1078_RS00030 0.46 -0.8
7,757 + HMPREF1078_RS00030 0.46 -1.9
7,757 + HMPREF1078_RS00030 0.46 -1.1
7,758 - HMPREF1078_RS00030 0.46 -0.8
7,758 - HMPREF1078_RS00030 0.46 -1.4
7,758 - HMPREF1078_RS00030 0.46 -2.0
7,758 - HMPREF1078_RS00030 0.46 -2.3
7,759 + HMPREF1078_RS00030 0.46 +0.2
7,760 - HMPREF1078_RS00030 0.46 +0.2
7,760 - HMPREF1078_RS00030 0.46 -1.6
7,760 - HMPREF1078_RS00030 0.46 +0.2
7,760 - HMPREF1078_RS00030 0.46 +0.6
7,760 - HMPREF1078_RS00030 0.46 +0.2
7,761 + HMPREF1078_RS00030 0.46 -1.8
7,761 + HMPREF1078_RS00030 0.46 -1.1
7,762 - HMPREF1078_RS00030 0.47 -2.3
7,762 - HMPREF1078_RS00030 0.47 +0.2
7,762 - HMPREF1078_RS00030 0.47 -1.0
7,762 - HMPREF1078_RS00030 0.47 -0.9
7,765 + HMPREF1078_RS00030 0.47 -0.7
7,833 + HMPREF1078_RS00030 0.60 -2.6
7,837 + HMPREF1078_RS00030 0.61 -0.5
7,838 - HMPREF1078_RS00030 0.61 -2.8
7,852 - HMPREF1078_RS00030 0.64 -2.3
7,936 + HMPREF1078_RS00030 0.80 -1.6
7,936 + HMPREF1078_RS00030 0.80 -2.1
7,937 - HMPREF1078_RS00030 0.80 -2.4
8,038 + +0.4
8,039 - -0.6
8,039 - -0.2
8,045 - -0.3
8,074 + -2.3
8,075 - -1.7
8,167 + HMPREF1078_RS00035 0.17 -0.4
8,186 - HMPREF1078_RS00035 0.21 +1.5
8,232 + HMPREF1078_RS00035 0.28 +1.2
8,233 - HMPREF1078_RS00035 0.29 -0.3
8,233 - HMPREF1078_RS00035 0.29 +0.5
8,234 + HMPREF1078_RS00035 0.29 -0.3
8,259 + HMPREF1078_RS00035 0.33 +0.6
8,259 + HMPREF1078_RS00035 0.33 -1.9
8,259 + HMPREF1078_RS00035 0.33 +0.7
8,260 - HMPREF1078_RS00035 0.33 -1.0
8,260 - HMPREF1078_RS00035 0.33 -1.1
8,392 + HMPREF1078_RS00035 0.55 -0.9
8,392 + HMPREF1078_RS00035 0.55 -0.9
8,421 - HMPREF1078_RS00035 0.60 -0.5
8,502 + HMPREF1078_RS00035 0.74 +2.0
8,502 + HMPREF1078_RS00035 0.74 +0.3
8,514 + HMPREF1078_RS00035 0.76 -1.1
8,515 - HMPREF1078_RS00035 0.76 -1.2
8,537 + HMPREF1078_RS00035 0.80 -0.3
8,541 + HMPREF1078_RS00035 0.81 +0.6
8,542 - HMPREF1078_RS00035 0.81 -0.3
8,542 - HMPREF1078_RS00035 0.81 +0.4
8,542 - HMPREF1078_RS00035 0.81 +0.7
8,548 + HMPREF1078_RS00035 0.82 +0.8
8,598 + -0.8
8,632 - -1.1
8,678 + +1.2
8,678 + -0.1
8,688 + -2.3
8,689 - +2.2
8,706 + +0.7
8,707 - -0.6
8,731 + -0.0
8,731 + -2.0
8,738 + -1.0
8,742 + -0.6
8,758 + -0.8
8,762 - +1.2
8,762 - +0.6
8,771 + -1.8
8,772 - +0.5
8,772 - -0.3
8,896 - +0.0
8,946 + -0.6
8,946 + -0.7
8,947 - -0.3
8,989 - HMPREF1078_RS00040 0.10 -1.8
9,036 + HMPREF1078_RS00040 0.12 -1.3

Or see this region's nucleotide sequence