Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15450 and HMPREF1078_RS15455 are separated by 10 nucleotides HMPREF1078_RS15455 and HMPREF1078_RS15460 are separated by 100 nucleotides HMPREF1078_RS15460 and HMPREF1078_RS18950 are separated by 404 nucleotides HMPREF1078_RS18950 and HMPREF1078_RS15465 are separated by 63 nucleotides
HMPREF1078_RS15450: HMPREF1078_RS15450 - Fe-S cluster domain-containing protein, at 186,106 to 187,116
_RS15450
HMPREF1078_RS15455: HMPREF1078_RS15455 - SoxR reducing system RseC family protein, at 187,127 to 187,543
_RS15455
HMPREF1078_RS15460: HMPREF1078_RS15460 - DUF3078 domain-containing protein, at 187,644 to 189,224
_RS15460
HMPREF1078_RS18950: HMPREF1078_RS18950 - ABC transporter ATP-binding protein, at 189,629 to 189,802
_RS18950
HMPREF1078_RS15465: HMPREF1078_RS15465 - hypoxanthine phosphoribosyltransferase, at 189,866 to 190,405
_RS15465
Position (kb) 187
188
189
190 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 187.148 kb on - strand at 187.588 kb on - strand at 187.599 kb on - strand at 187.619 kb on + strand at 187.630 kb on + strand at 187.630 kb on + strand at 187.655 kb on - strand at 187.655 kb on - strand at 187.693 kb on + strand at 187.694 kb on - strand at 187.733 kb on - strand at 187.733 kb on - strand at 187.811 kb on + strand, within HMPREF1078_RS15460 at 187.834 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.017 kb on + strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.018 kb on - strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.021 kb on + strand, within HMPREF1078_RS15460 at 188.022 kb on - strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.023 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.027 kb on + strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.028 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.030 kb on - strand, within HMPREF1078_RS15460 at 188.085 kb on - strand, within HMPREF1078_RS15460 at 188.104 kb on + strand, within HMPREF1078_RS15460 at 188.179 kb on + strand, within HMPREF1078_RS15460 at 188.179 kb on + strand, within HMPREF1078_RS15460 at 188.180 kb on - strand, within HMPREF1078_RS15460 at 188.190 kb on + strand, within HMPREF1078_RS15460 at 188.191 kb on - strand, within HMPREF1078_RS15460 at 188.224 kb on + strand, within HMPREF1078_RS15460 at 188.271 kb on + strand, within HMPREF1078_RS15460 at 188.283 kb on + strand, within HMPREF1078_RS15460 at 188.299 kb on - strand, within HMPREF1078_RS15460 at 188.299 kb on - strand, within HMPREF1078_RS15460 at 188.299 kb on - strand, within HMPREF1078_RS15460 at 188.299 kb on - strand, within HMPREF1078_RS15460 at 188.301 kb on - strand, within HMPREF1078_RS15460 at 188.325 kb on - strand, within HMPREF1078_RS15460 at 188.365 kb on - strand, within HMPREF1078_RS15460 at 188.387 kb on - strand, within HMPREF1078_RS15460 at 188.396 kb on - strand, within HMPREF1078_RS15460 at 188.412 kb on - strand, within HMPREF1078_RS15460 at 188.456 kb on - strand, within HMPREF1078_RS15460 at 188.566 kb on - strand, within HMPREF1078_RS15460 at 188.587 kb on + strand, within HMPREF1078_RS15460 at 188.670 kb on + strand, within HMPREF1078_RS15460 at 188.671 kb on - strand, within HMPREF1078_RS15460 at 188.680 kb on + strand, within HMPREF1078_RS15460 at 188.680 kb on + strand, within HMPREF1078_RS15460 at 188.680 kb on + strand, within HMPREF1078_RS15460 at 188.681 kb on - strand, within HMPREF1078_RS15460 at 188.681 kb on - strand, within HMPREF1078_RS15460 at 188.681 kb on - strand, within HMPREF1078_RS15460 at 188.684 kb on + strand, within HMPREF1078_RS15460 at 188.685 kb on - strand, within HMPREF1078_RS15460 at 188.687 kb on - strand, within HMPREF1078_RS15460 at 188.716 kb on - strand, within HMPREF1078_RS15460 at 188.794 kb on + strand, within HMPREF1078_RS15460 at 188.794 kb on + strand, within HMPREF1078_RS15460 at 188.816 kb on + strand, within HMPREF1078_RS15460 at 188.816 kb on + strand, within HMPREF1078_RS15460 at 188.865 kb on - strand, within HMPREF1078_RS15460 at 188.865 kb on - strand, within HMPREF1078_RS15460 at 188.868 kb on - strand, within HMPREF1078_RS15460 at 188.868 kb on - strand, within HMPREF1078_RS15460 at 188.929 kb on + strand, within HMPREF1078_RS15460 at 188.930 kb on - strand, within HMPREF1078_RS15460 at 188.930 kb on - strand, within HMPREF1078_RS15460 at 188.930 kb on - strand, within HMPREF1078_RS15460 at 188.930 kb on - strand, within HMPREF1078_RS15460 at 188.930 kb on - strand, within HMPREF1078_RS15460 at 189.011 kb on - strand, within HMPREF1078_RS15460 at 189.017 kb on + strand, within HMPREF1078_RS15460 at 189.017 kb on + strand, within HMPREF1078_RS15460 at 189.081 kb on + strand at 189.081 kb on + strand at 189.082 kb on - strand at 189.140 kb on + strand at 189.141 kb on - strand at 189.144 kb on + strand at 189.144 kb on + strand at 189.145 kb on - strand at 189.174 kb on - strand at 189.174 kb on - strand at 189.184 kb on - strand at 189.189 kb on + strand at 189.190 kb on - strand at 189.190 kb on - strand at 189.190 kb on - strand at 189.190 kb on - strand at 189.190 kb on - strand at 189.195 kb on - strand at 189.204 kb on + strand at 189.219 kb on + strand at 189.239 kb on - strand at 189.253 kb on + strand at 189.285 kb on + strand at 189.318 kb on + strand at 189.319 kb on - strand at 189.346 kb on - strand at 189.360 kb on + strand at 189.361 kb on - strand at 189.381 kb on + strand at 189.382 kb on - strand at 189.391 kb on + strand at 189.436 kb on - strand at 189.446 kb on - strand at 189.459 kb on + strand at 189.459 kb on + strand at 189.459 kb on + strand at 189.459 kb on + strand at 189.460 kb on - strand at 189.460 kb on - strand at 189.460 kb on - strand at 189.460 kb on - strand at 189.460 kb on - strand at 189.460 kb on - strand at 189.461 kb on + strand at 189.462 kb on - strand at 189.462 kb on - strand at 189.462 kb on - strand at 189.474 kb on + strand at 189.479 kb on - strand at 189.530 kb on + strand at 189.531 kb on - strand at 189.531 kb on - strand at 189.536 kb on - strand at 189.573 kb on + strand at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.768 kb on + strand, within HMPREF1078_RS18950 at 189.871 kb on + strand at 189.871 kb on + strand at 189.871 kb on + strand at 189.907 kb on + strand at 189.969 kb on + strand, within HMPREF1078_RS15465 at 189.969 kb on + strand, within HMPREF1078_RS15465 at 190.015 kb on + strand, within HMPREF1078_RS15465 at 190.021 kb on + strand, within HMPREF1078_RS15465 at 190.076 kb on + strand, within HMPREF1078_RS15465 at 190.085 kb on + strand, within HMPREF1078_RS15465 at 190.085 kb on + strand, within HMPREF1078_RS15465 at 190.085 kb on + strand, within HMPREF1078_RS15465 at 190.099 kb on + strand, within HMPREF1078_RS15465 at 190.099 kb on + strand, within HMPREF1078_RS15465 at 190.167 kb on + strand, within HMPREF1078_RS15465 at 190.174 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.179 kb on + strand, within HMPREF1078_RS15465 at 190.183 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465 at 190.202 kb on + strand, within HMPREF1078_RS15465
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=Mono; mouse17; day3 remove 187,148 - +0.5 187,588 - +0.7 187,599 - +1.3 187,619 + -0.2 187,630 + -0.7 187,630 + -1.1 187,655 - +2.3 187,655 - -1.7 187,693 + +0.9 187,694 - -0.7 187,733 - +0.9 187,733 - +0.9 187,811 + HMPREF1078_RS15460 0.11 -1.4 187,834 + HMPREF1078_RS15460 0.12 -0.1 188,017 + HMPREF1078_RS15460 0.24 -0.7 188,017 + HMPREF1078_RS15460 0.24 -2.1 188,017 + HMPREF1078_RS15460 0.24 -1.4 188,017 + HMPREF1078_RS15460 0.24 -2.2 188,017 + HMPREF1078_RS15460 0.24 -0.1 188,017 + HMPREF1078_RS15460 0.24 -1.4 188,017 + HMPREF1078_RS15460 0.24 -0.1 188,018 - HMPREF1078_RS15460 0.24 -2.0 188,018 - HMPREF1078_RS15460 0.24 -1.1 188,018 - HMPREF1078_RS15460 0.24 -2.5 188,018 - HMPREF1078_RS15460 0.24 -1.7 188,018 - HMPREF1078_RS15460 0.24 -1.1 188,018 - HMPREF1078_RS15460 0.24 -2.4 188,018 - HMPREF1078_RS15460 0.24 -1.7 188,021 + HMPREF1078_RS15460 0.24 -2.9 188,021 + HMPREF1078_RS15460 0.24 -3.2 188,021 + HMPREF1078_RS15460 0.24 -0.1 188,022 - HMPREF1078_RS15460 0.24 -1.9 188,023 + HMPREF1078_RS15460 0.24 +0.9 188,023 + HMPREF1078_RS15460 0.24 -1.1 188,023 + HMPREF1078_RS15460 0.24 -1.1 188,023 + HMPREF1078_RS15460 0.24 -2.1 188,027 + HMPREF1078_RS15460 0.24 -1.7 188,027 + HMPREF1078_RS15460 0.24 -1.9 188,028 - HMPREF1078_RS15460 0.24 -0.1 188,028 - HMPREF1078_RS15460 0.24 -1.7 188,028 - HMPREF1078_RS15460 0.24 -3.8 188,028 - HMPREF1078_RS15460 0.24 -1.9 188,030 - HMPREF1078_RS15460 0.24 -2.5 188,030 - HMPREF1078_RS15460 0.24 -2.1 188,085 - HMPREF1078_RS15460 0.28 -1.7 188,104 + HMPREF1078_RS15460 0.29 +0.3 188,179 + HMPREF1078_RS15460 0.34 -1.1 188,179 + HMPREF1078_RS15460 0.34 -0.7 188,180 - HMPREF1078_RS15460 0.34 -1.4 188,190 + HMPREF1078_RS15460 0.35 -0.1 188,191 - HMPREF1078_RS15460 0.35 +0.9 188,224 + HMPREF1078_RS15460 0.37 -0.1 188,271 + HMPREF1078_RS15460 0.40 -0.7 188,283 + HMPREF1078_RS15460 0.40 -1.4 188,299 - HMPREF1078_RS15460 0.41 -0.1 188,299 - HMPREF1078_RS15460 0.41 -2.2 188,299 - HMPREF1078_RS15460 0.41 -0.5 188,299 - HMPREF1078_RS15460 0.41 +0.9 188,301 - HMPREF1078_RS15460 0.42 -0.1 188,325 - HMPREF1078_RS15460 0.43 +2.3 188,365 - HMPREF1078_RS15460 0.46 -0.1 188,387 - HMPREF1078_RS15460 0.47 +0.9 188,396 - HMPREF1078_RS15460 0.48 -0.1 188,412 - HMPREF1078_RS15460 0.49 -1.1 188,456 - HMPREF1078_RS15460 0.51 -0.7 188,566 - HMPREF1078_RS15460 0.58 -1.1 188,587 + HMPREF1078_RS15460 0.60 -0.7 188,670 + HMPREF1078_RS15460 0.65 -1.5 188,671 - HMPREF1078_RS15460 0.65 -0.1 188,680 + HMPREF1078_RS15460 0.66 -1.1 188,680 + HMPREF1078_RS15460 0.66 +0.9 188,680 + HMPREF1078_RS15460 0.66 -1.7 188,681 - HMPREF1078_RS15460 0.66 -1.4 188,681 - HMPREF1078_RS15460 0.66 +0.1 188,681 - HMPREF1078_RS15460 0.66 -0.7 188,684 + HMPREF1078_RS15460 0.66 -0.7 188,685 - HMPREF1078_RS15460 0.66 -1.4 188,687 - HMPREF1078_RS15460 0.66 -1.7 188,716 - HMPREF1078_RS15460 0.68 -0.7 188,794 + HMPREF1078_RS15460 0.73 +0.9 188,794 + HMPREF1078_RS15460 0.73 -0.1 188,816 + HMPREF1078_RS15460 0.74 -2.1 188,816 + HMPREF1078_RS15460 0.74 -1.4 188,865 - HMPREF1078_RS15460 0.77 +0.9 188,865 - HMPREF1078_RS15460 0.77 -0.1 188,868 - HMPREF1078_RS15460 0.77 +0.9 188,868 - HMPREF1078_RS15460 0.77 -2.2 188,929 + HMPREF1078_RS15460 0.81 -2.4 188,930 - HMPREF1078_RS15460 0.81 -1.1 188,930 - HMPREF1078_RS15460 0.81 -1.4 188,930 - HMPREF1078_RS15460 0.81 -0.7 188,930 - HMPREF1078_RS15460 0.81 -2.1 188,930 - HMPREF1078_RS15460 0.81 -2.4 189,011 - HMPREF1078_RS15460 0.86 -0.1 189,017 + HMPREF1078_RS15460 0.87 -1.1 189,017 + HMPREF1078_RS15460 0.87 -2.2 189,081 + -1.1 189,081 + -0.7 189,082 - -0.7 189,140 + -0.7 189,141 - -1.7 189,144 + -1.1 189,144 + +0.9 189,145 - -0.7 189,174 - -0.1 189,174 - -1.7 189,184 - -1.4 189,189 + -0.1 189,190 - -0.7 189,190 - +0.9 189,190 - -3.2 189,190 - -0.7 189,190 - -1.9 189,195 - -2.2 189,204 + -2.1 189,219 + -0.1 189,239 - +0.9 189,253 + -2.9 189,285 + +0.3 189,318 + -2.1 189,319 - -1.6 189,346 - -0.1 189,360 + -0.2 189,361 - +0.5 189,381 + -1.4 189,382 - -1.7 189,391 + -0.6 189,436 - -0.5 189,446 - +1.8 189,459 + +0.4 189,459 + +0.8 189,459 + -0.5 189,459 + -1.4 189,460 - -0.2 189,460 - -0.5 189,460 - -2.1 189,460 - +0.3 189,460 - -2.5 189,460 - +2.7 189,461 + -1.4 189,462 - +0.3 189,462 - -0.1 189,462 - -1.4 189,474 + +1.3 189,479 - -0.8 189,530 + -0.7 189,531 - -0.5 189,531 - +1.5 189,536 - +0.3 189,573 + -0.7 189,768 + HMPREF1078_RS18950 0.80 +0.3 189,768 + HMPREF1078_RS18950 0.80 -3.4 189,768 + HMPREF1078_RS18950 0.80 -0.2 189,768 + HMPREF1078_RS18950 0.80 +0.8 189,768 + HMPREF1078_RS18950 0.80 -1.9 189,768 + HMPREF1078_RS18950 0.80 -1.1 189,871 + +1.9 189,871 + -2.0 189,871 + +0.2 189,907 + -0.9 189,969 + HMPREF1078_RS15465 0.19 -1.7 189,969 + HMPREF1078_RS15465 0.19 +0.1 190,015 + HMPREF1078_RS15465 0.28 -0.4 190,021 + HMPREF1078_RS15465 0.29 -0.6 190,076 + HMPREF1078_RS15465 0.39 -0.7 190,085 + HMPREF1078_RS15465 0.41 +2.5 190,085 + HMPREF1078_RS15465 0.41 +0.4 190,085 + HMPREF1078_RS15465 0.41 -1.9 190,099 + HMPREF1078_RS15465 0.43 -0.7 190,099 + HMPREF1078_RS15465 0.43 +0.4 190,167 + HMPREF1078_RS15465 0.56 -0.1 190,174 + HMPREF1078_RS15465 0.57 +0.3 190,179 + HMPREF1078_RS15465 0.58 -1.8 190,179 + HMPREF1078_RS15465 0.58 +0.9 190,179 + HMPREF1078_RS15465 0.58 +0.7 190,179 + HMPREF1078_RS15465 0.58 -1.7 190,179 + HMPREF1078_RS15465 0.58 +0.1 190,179 + HMPREF1078_RS15465 0.58 +0.5 190,179 + HMPREF1078_RS15465 0.58 +0.3 190,179 + HMPREF1078_RS15465 0.58 -0.1 190,179 + HMPREF1078_RS15465 0.58 +1.3 190,179 + HMPREF1078_RS15465 0.58 -0.2 190,179 + HMPREF1078_RS15465 0.58 -1.4 190,179 + HMPREF1078_RS15465 0.58 -1.3 190,179 + HMPREF1078_RS15465 0.58 -1.8 190,183 + HMPREF1078_RS15465 0.59 +0.6 190,202 + HMPREF1078_RS15465 0.62 -1.2 190,202 + HMPREF1078_RS15465 0.62 +0.1 190,202 + HMPREF1078_RS15465 0.62 -0.1 190,202 + HMPREF1078_RS15465 0.62 -0.3 190,202 + HMPREF1078_RS15465 0.62 -0.0 190,202 + HMPREF1078_RS15465 0.62 -0.3 190,202 + HMPREF1078_RS15465 0.62 +0.1
Or see this region's nucleotide sequence